TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441110.2.1
(643 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511712.1|CO511712 s13dSG01C0100006_103324 Glandular tr... 190 2e-049
>gb|CO511712.1|CO511712 s13dSG01C0100006_103324 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 190 bits (409), Expect = 2e-049
Identities = 78/94 (82%), Positives = 83/94 (88%)
Frame = -1 / +2
Query: 577 ERFAESKKEXXXXXXXXXXANVPFLILGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 398
ERFAESKKE ANVPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKVNL
Sbjct: 137 ERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNL 316
Query: 397 GDSNVRPLEVFMCSVVRKMGYGDGFKWVSQYIK* 296
DSNVRP+EVFMCS+V+KMGYGDGFKWVSQYIK*
Sbjct: 317 SDSNVRPMEVFMCSIVKKMGYGDGFKWVSQYIK* 418
Score = 125 bits (267), Expect = 6e-030
Identities = 59/133 (44%), Positives = 79/133 (59%)
Frame = -3 / +1
Query: 638 LEGLLRKG*CCSIPGRCV**GAIC*IKKGAGRSPVR*FLGKCSISHPWQQD*YPVCCL*R 459
LE LL G C + G C+* G IC*+KKG G SP * +GKC PW+Q+*Y +CCL R
Sbjct: 76 LERLLCPGRCSGLLG*CL*QGKIC*VKKGVGCSPF**IIGKCPFPCPWKQN*YSICCLRR 255
Query: 458 GAAVSPRP*QLHNREGQGQPWRLQCPAT*GFHVQCCSQDGLRRWFQVGLPIHQVGPLPGR 279
A+ QLH+ +G G+ RL+CP G HVQ C ++GL WFQ+G +HQ+ R
Sbjct: 256 RIALPFGLEQLHHWQG*GKFVRLKCPTHGGIHVQYCEENGLW*WFQMGFSVHQIEFFSKR 435
Query: 278 LLSPAIFLPCYLF 240
L + L +L+
Sbjct: 436 WLGISYLLCLFLY 474
Score = 122 bits (260), Expect = 6e-029
Identities = 53/77 (68%), Positives = 57/77 (74%)
Frame = +3 / -2
Query: 297 YLMYWETHLKPSP*PILRTTLHMKTSSGRTLESPRLTLPFPVVKLLRPR*YRXXXXEAAY 476
YLMY ETHLKPSP*PI T LHM TS GRT ES + TLP PVVKLL+P+ R EAAY
Sbjct: 417 YLMY*ETHLKPSP*PIFFTILHMNTSMGRTFESDKFTLPLPVVKLLKPKW*RNSSSEAAY 238
Query: 477 GISILLPRMRNGTFAKE 527
GISIL PR R GTFA +
Sbjct: 237 GISILFPRTRKGTFAND 187
Score = 110 bits (235), Expect = 2e-025
Identities = 59/117 (50%), Positives = 68/117 (58%)
Frame = -2 / +3
Query: 639 SGRITTQRLML*YTW*MRMIRSDLLNQKRSWTLSCQMIPWQMFHFSSLATRLISRMLPLK 460
SG+IT R M TW M M R DLL+QKRSW LS M WQM SL T+LI MLP K
Sbjct: 75 SGKITMPR*MQWSTWLMLMTRKDLLSQKRSWMLSFLMNHWQMSLSLSLETKLIFHMLPQK 254
Query: 459 RSCGIT*ALATSQPGRARSTLATPMSGHLRFSCAVLFARWATAMVSSGSPNTSSRAL 289
+C A ATS R R T MS R+SCAVL +W MVS+G +TS+R L
Sbjct: 255 TNCVTIWA*ATSPLARVR*ICQTQMSDPWRYSCAVL*RKWVMVMVSNGFLSTSNRVL 425
Score = 108 bits (230), Expect = 8e-025
Identities = 54/117 (46%), Positives = 58/117 (49%)
Frame = +1 / -3
Query: 289 KGPT*CIGRPT*NHRRSPSCEQHCT*KPQVAGHWSRQG*PCPSRL*SC*GLGDTAAPLQR 468
K *C +P *NH +P Q+CT* P GH S P P + *SC A L R
Sbjct: 425 KNSI*CTEKPI*NHHHNPFSSQYCT*IPPWVGHLSLTNLPYPCQW*SCSSPNGNAIRLLR 246
Query: 469 QHTGYQSCCQG*EMEHLPRNHLTGERPAPFLIQQIAPYHTHLPGILQHQPLRSNPSR 639
QH YQ C QG HLP H GE P PFL QQI P H H P H P SN SR
Sbjct: 245 QHMEYQFCFQGQGKGHLPMIHQKGEHPTPFLTQQIFPCHKHQPSRPLHLPGHSNLSR 75
Score = 98.7 bits (209), Expect = 6e-022
Identities = 51/118 (43%), Positives = 70/118 (59%)
Frame = +2 / -1
Query: 290 RALLDVLGDPLETIAVAHLANNTAHENLKWPDIGVAKVDLALPGCEVAKA*VIPQLLFRG 469
R L DVL +P ETI + H +NTAHE L DI V ++ L L EVA+A ++ Q +F G
Sbjct: 424 RTLFDVLRNPFETITITHFLHNTAHEYLHGSDI*V*QIYLTLASGEVAQAQMVTQFVF*G 245
Query: 470 SIRDINLVAKDEKWNICQGII*QESVQXXXXXXXXXXXXRIYQVYYSINLCVVILPDA 643
SI +IN V+KD++ +ICQ I +ES+Q I QV + I L +VI PD+
Sbjct: 244 SIWNINFVSKDKERDICQ*FIRKESIQLLF*LSKSFLVISINQVDHCIYLGIVIFPDS 71
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,383,439
Number of Sequences: 7669
Number of extensions: 76781
Number of successful extensions: 1042
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 158426370
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)