TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430769.2.1
(617 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CQ760964.1| Sequence 9 from Patent WO2004002216 122 2e-032
gb|U20736.1|MSU20736 Medicago sativa S-adenosyl-L-methionin... 122 3e-032
emb|AX259371.1| Sequence 1 from Patent WO0173090 122 3e-032
emb|CQ760958.1| Sequence 3 from Patent WO2004002216 122 3e-032
>emb|CQ760964.1| Sequence 9 from Patent WO2004002216
Length = 1906
Score = 122 bits (262), Expect(2) = 2e-032
Identities = 47/99 (47%), Positives = 62/99 (62%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+ D N G++DF FVDADK NY+ YH++ YDNTLW G+V PPDAPL
Sbjct: 1417 IKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRK 1596
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + ELN L+ DPR+E+C L + DG+TICRR+
Sbjct: 1597 YVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 1713
Score = 29.9 bits (59), Expect(2) = 2e-032
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
++AGV K+ FREGP L LD+
Sbjct: 1348 KKAGVDHKIDFREGPALPVLDE 1413
>gb|U20736.1|MSU20736 Medicago sativa S-adenosyl-L-methionine:trans-caffeoyl-CoA
3-O-methyltransferase (CCOMT) mRNA, complete cds
Length = 966
Score = 122 bits (262), Expect(2) = 3e-032
Identities = 47/99 (47%), Positives = 62/99 (62%)
Frame = -3 / +3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+ D N G++DF FVDADK NY+ YH++ YDNTLW G+V PPDAPL
Sbjct: 477 IKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRK 656
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + ELN L+ DPR+E+C L + DG+TICRR+
Sbjct: 657 YVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 773
Score = 29.9 bits (59), Expect(2) = 3e-032
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2 / +3
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
++AGV K+ FREGP L LD+
Sbjct: 408 KKAGVDHKIDFREGPALPVLDE 473
>emb|AX259371.1| Sequence 1 from Patent WO0173090
Length = 744
Score = 122 bits (262), Expect(2) = 3e-032
Identities = 47/99 (47%), Positives = 62/99 (62%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+ D N G++DF FVDADK NY+ YH++ YDNTLW G+V PPDAPL
Sbjct: 442 IKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRK 621
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + ELN L+ DPR+E+C L + DG+TICRR+
Sbjct: 622 YVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 738
Score = 29.9 bits (59), Expect(2) = 3e-032
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
++AGV K+ FREGP L LD+
Sbjct: 373 KKAGVDHKIDFREGPALPVLDE 438
>emb|CQ760958.1| Sequence 3 from Patent WO2004002216
Length = 744
Score = 122 bits (262), Expect(2) = 3e-032
Identities = 47/99 (47%), Positives = 62/99 (62%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+ D N G++DF FVDADK NY+ YH++ YDNTLW G+V PPDAPL
Sbjct: 442 IKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRK 621
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + ELN L+ DPR+E+C L + DG+TICRR+
Sbjct: 622 YVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 738
Score = 29.9 bits (59), Expect(2) = 3e-032
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
++AGV K+ FREGP L LD+
Sbjct: 373 KKAGVDHKIDFREGPALPVLDE 438
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,942,535
Number of Sequences: 7669
Number of extensions: 48005
Number of successful extensions: 3759
Number of sequences better than 1.0e-020: 4
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 153198796
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)