TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419355.2.1
(1174 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF332134.1| Medicago sativa FtsH protease (FtsH) mRNA, c... 91 2e-022
>gb|AF332134.1| Medicago sativa FtsH protease (FtsH) mRNA, complete cds; chloroplast
gene for chloroplast product
Length = 2352
Score = 91.3 bits (193), Expect(2) = 2e-022
Identities = 41/76 (53%), Positives = 51/76 (67%)
Frame = +3 / +2
Query: 36 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAP 215
KG LL GPPGTGKT+LA+AVA E T FF+ +AS V + G V+ LFE A+ AP
Sbjct: 911 KGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAP 1090
Query: 216 STIFLDEIDAIISQRG 263
+F+DEIDA+ QRG
Sbjct: 1091 CIVFIDEIDAVGRQRG 1138
Score = 29.5 bits (58), Expect(2) = 2e-022
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3 / +2
Query: 342 NDLVFVLAATNLPWELDAAMLR 407
N V VLAATN P LD+A+LR
Sbjct: 1217 NSGVIVLAATNRPDVLDSALLR 1282
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 10,973,827
Number of Sequences: 7669
Number of extensions: 152250
Number of successful extensions: 1024
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 318823947
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)