TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2306445.2.1
         (1074 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO511765.1|CO511765  s13dSG01G1100088_103430 Glandular tr...   140   5e-045
emb|Y11607.1|MSMP2C  M.sativa mRNA for protein phosphatase 2C      82   1e-044

>gb|CO511765.1|CO511765 s13dSG01G1100088_103430 Glandular trichomes Medicago sativa cDNA,
            mRNA sequence
          Length = 545

 Score =  140 bits (301), Expect(2) = 5e-045
 Identities = 54/115 (46%), Positives = 83/115 (72%)
 Frame = -3 / +1

                                                                        
Query: 1066 VSGGGLSQNGRFSYGYASSPGKRASMEDFYETKIDCVDGQIVGLFGVFDGHGGAKVAEYV 887
            V+GG  S++ R S GY+S  GKR +MEDFY+ K   +DG+ V LFG+FDGHGG++ AE++
Sbjct: 55   VTGGC*SEDERLSCGYSSFRGKRVTMEDFYDIKTSTIDGRSVCLFGIFDGHGGSRAAEHL 234

                                                                   
Query: 886  KENLFNNLVSHPKFISDTKVAIDDAYKSTDSEFLESDSSQNQCGSTASTAVLVGD 722
            K++LF NL+ HPKF++DTK+AI + Y+ TD+EFL S+    +   + ++  ++ D
Sbjct: 235  KDHLFENLMKHPKFLTDTKLAISETYQQTDAEFLNSEKDNFRDDGSTASTAVLVD 399




 Score = 62.0 bits (129), Expect(3) = 2e-024
 Identities = 33/93 (35%), Positives = 49/93 (52%)
 Frame = +2 / -3

                                                                        
Query: 788  EFTVGAFISIIYSDFSITDELWMTNKIVEQVFFNILCYLSTTMTIKNSKKTNYLAINTIN 967
            + ++   I   YS F I  +LWM ++I++++   +L    TTMTIK SK  N  AIN   
Sbjct: 333  KLSIRLLICFTYSQFGIRQKLWMLHEILKKMILQMLSSTRTTMTIKYSK*AN*TAING*C 154

                                             
Query: 968  FCLIEVFHGCPFTRGACIAIAKSTILAEAAAAD 1066
              +IE+ HG      A I  AKS I   A+ ++
Sbjct: 153  LNIIEILHGHSLPPKA*IPTAKSFIFTLASTSN 55




 Score = 55.6 bits (115), Expect(2) = 5e-045
 Identities = 21/29 (72%), Positives = 27/29 (93%)
 Frame = -3 / +3

                                        
Query: 664 AIAVSKDHKPDQTDERQRIEDAGGFVMWA 578
           AIA+S DHKP+++DER+RIE+AGG VMWA
Sbjct: 459 AIALSVDHKPNRSDERKRIENAGGVVMWA 545




 Score = 42.8 bits (87), Expect(3) = 2e-024
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +3 / -1

                                          
Query: 666 FPSLHMIALESPTFATKRRSPTSTAVDAVDP 758
           FP+  +  LESPT AT RR  T TAV+AV+P
Sbjct: 458 FPAFDITVLESPTLAT*RRLSTKTAVEAVEP 366




 Score = 40.0 bits (81), Expect(3) = 2e-024
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +2 / -1

                                       
Query: 578 CPHHKTSSIFNTLPLISLIRLVIL*NSN 661
           CPH  T+SI N+LPLI+ IR +I   SN
Sbjct: 545 CPHDNTTSILNSLPLITSIRFMIYRESN 462



>emb|Y11607.1|MSMP2C M.sativa mRNA for protein phosphatase 2C
          Length = 1499

 Score = 81.7 bits (172), Expect(4) = 1e-044
 Identities = 34/63 (53%), Positives = 44/63 (69%)
 Frame = -3 / +3

                                                                        
Query: 577  GTWRVGGVLAVSRAFGDKLLKQYVVVDPEIREEVVDDTLEFLILASDGLWDVVSNEEAVA 398
            G WR+ G LAVSR  GD+ LKQ+V  +PE +   ++   + LILASDGLWD VSN+EAV 
Sbjct: 915  GVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVIRIEPEHDLLILASDGLWDKVSNQEAVD 1094

               
Query: 397  MTR 389
            + R
Sbjct: 1095 IAR 1103




 Score = 63.8 bits (133), Expect(4) = 1e-044
 Identities = 27/57 (47%), Positives = 36/57 (63%)
 Frame = -3 / +3

                                                                    
Query: 757 GSTASTAVLVGDRLFVANVGDSRAIICREGNAIAVSKDHKPDQTDERQRIEDAGGFV 587
           GS   TA +    L V+N GD RA+I R G A A++ DH+P + DE+ RIE  GG+V
Sbjct: 732 GSCCVTAFIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDEKDRIETLGGYV 902




 Score = 56.1 bits (116), Expect(4) = 1e-044
 Identities = 23/56 (41%), Positives = 31/56 (55%)
 Frame = -3 / +3

                                                                    
Query: 1027 YGYASSPGKRASMEDFYETKIDCVDGQIVGLFGVFDGHGGAKVAEYVKENLFNNLV 860
            Y      G+R  MED Y   ++      +  FGVFDGHGGAK AE+ + NL  N++
Sbjct: 465  YSVYCKRGRREYMEDRYTAGVNLRGENNLAFFGVFDGHGGAKAAEFARNNLEKNIL 632




 Score = 29.5 bits (58), Expect(4) = 1e-044
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3 / +3

                                          
Query: 838 DTKVAIDDAYKSTDSEFLESDSSQNQCGSTA 746
           D + A+   Y +TDSEF++ D     C  TA
Sbjct: 660 DVEEAVKRGYLNTDSEFMKKDLHGGSCCVTA 752



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 9,174,828
Number of Sequences: 7669
Number of extensions: 124555
Number of successful extensions: 1359
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 288503514
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)