TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276562.2.1
(1286 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|X74947.1|MSANN M.sativa mRNA for annexin 434 e-122
gb|CO511909.1|CO511909 s13dSG05D0900078_103718 Glandular tr... 251 2e-067
gb|CO516777.1|CO516777 s13dSG94C1200098_446882 Glandular tr... 244 1e-065
gb|CO517024.1|CO517024 s13dSG31B1000079_468594 Glandular tr... 235 8e-063
gb|CO514156.1|CO514156 s13dSG75H1000080_156974 Glandular tr... 234 2e-062
gb|CO511849.1|CO511849 s13dSG02F1200103_103598 Glandular tr... 231 2e-061
gb|CO512301.1|CO512301 s13dSG68D0200014_114116 Glandular tr... 228 1e-060
gb|CO513636.1|CO513636 s13dSG17A0100001_140054 Glandular tr... 217 3e-057
gb|CO515484.1|CO515484 s13dSG52B0200025_418027 Glandular tr... 213 5e-056
gb|CO517015.1|CO517015 s13dSG31A1000071_468576 Glandular tr... 207 2e-054
gb|CO511888.1|CO511888 s13dSG05B0800073_103676 Glandular tr... 114 8e-048
gb|CO516334.1|CO516334 s13dSG99C0300018_445996 Glandular tr... 175 1e-044
emb|Y11348.1|MSNANN M.sativa mRNA for annexin-like protein 98 1e-042
>emb|X74947.1|MSANN M.sativa mRNA for annexin
Length = 1182
Score = 434 bits (942), Expect = e-122
Identities = 185/305 (60%), Positives = 235/305 (77%)
Frame = -3 / +2
Query: 1131 SSVPAVAEDCEQLHKAFEGWGTNEKLIISILAHRNAAQRRAIRRGYAEAYGKELLRALGD 952
S VP+ +ED EQL AF+GWGTNE LIISILAHRNAAQR++IR Y + +G++LL+ L
Sbjct: 2 SHVPSPSEDSEQLRGAFQGWGTNEGLIISILAHRNAAQRKSIRETYTQTHGEDLLKDLDK 181
Query: 951 EIHGKFERAVILWTLDPAERDAVLANEEAKKSHPGGRALVEIACARTPAQLFAVKQAYHD 772
E+ FE+AV+LWTLDPAERDA LAN+ K +VEIA R+P +L KQAY
Sbjct: 182 ELSSDFEKAVLLWTLDPAERDAFLANQATKMLTSNNSIIVEIASTRSPLELLKAKQAYQV 361
Query: 771 RFKRSLEEDVAAHVTGDFRKLLVPLVSAYRYDGPEVNTSLAHSEAKILHEKIHKKAYSDE 592
RFK+SLEEDVA H +GD RKLLVPLV +RY+G EVN +LA SEAK+LHEKI KAY+ +
Sbjct: 362 RFKKSLEEDVAYHTSGDIRKLLVPLVGIHRYEGDEVNMTLAKSEAKLLHEKIADKAYNHD 541
Query: 591 EIIRILTTRSKAQLLATFNSYKDQFTHAINKDLKADPKDEFLSTLRAIIRCFTCPDRYFE 412
++IRI+TTRSKAQL AT N Y ++F + I+KDL+ D DE+L LRA I+ T P++YFE
Sbjct: 542 DLIRIVTTRSKAQLNATLNHYNNEFGNVIDKDLETDSDDEYLKLLRAAIKGLTYPEKYFE 721
Query: 411 KVIRLALGGMGTDEDDLTRVVTTRAEVDLKLIKEAYQKRNSVPLERAVAKDTTRDYEDIM 232
+++RLA+ MGTDE+ LTRVVTTRAEVDL+ I E YQ+RNSVPL+RA+ KDT+ DY+ I+
Sbjct: 722 ELLRLAINKMGTDENALTRVVTTRAEVDLQRIAEEYQRRNSVPLDRAIDKDTSGDYQKIL 901
Query: 231 LALLG 217
LAL+G
Sbjct: 902 LALMG 916
Score = 156 bits (335), Expect(2) = 1e-039
Identities = 76/202 (37%), Positives = 123/202 (60%)
Frame = +1 / -3
Query: 229 KHNILIISSCIFGHSTLQRHTVSLLISLLYQLQVDLGASSYDPGEVILISAHASKSQSND 408
K N LI+S +F + T+QR+TVS L+ L LQ++L +S + + I I +H SQ +
Sbjct: 904 KENFLIVSRSVFVNCTVQRNTVSSLVFLRNSLQINLSSSCHHSSKSIFIGSHLVYSQPKE 725
Query: 409 FLEVSVRAGEAPDDRPQC*KKLILGVSFQILVDCMSELILVAIECCK*LSFAPCGENSND 588
FL++ +R G+A + PQ + I+ +SFQILV + +LI++ I+ C *L F PC N +
Sbjct: 724 FLKIFLRVGQALNCCPQ*FQIFIIRISFQILVYYIPKLIVIVIQSCI*LRFTPCCYNPDQ 545
Query: 589 LLITVSLLMDLLMKYFGFRMSQRCVHLWAIIAVRTNKRH*KLSEVAGDMRGNVLLERSLK 768
+++ VSL+ +LLMK F FR Q VHL ++I V +KR+ KL++V M GN+ + +
Sbjct: 544 VIMIVSLIRNLLMKQFSFRFCQCHVHLISLITVYAHKRNQKLADVTRSMIGNIFFKGLFE 365
Query: 769 PVMVRLLDRKELRGRARARDLH 834
++ LL K+ + R+ + H
Sbjct: 364 TDLICLLCLKKFKWRSCGSNFH 299
Score = 26.3 bits (51), Expect(2) = 1e-039
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2 / -1
Query: 1043 MEMISFSLVPQPSKALWSCSQSSATAGTEE 1132
+++I S VP P KA +CS SS GT E
Sbjct: 90 IDIIKPSFVPHP*KAPRNCSLSSDGDGT*E 1
>gb|CO511909.1|CO511909 s13dSG05D0900078_103718 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 251 bits (542), Expect = 2e-067
Identities = 106/177 (59%), Positives = 131/177 (74%)
Frame = -3 / +1
Query: 1152 MATLTVPSSVPAVAEDCEQLHKAFEGWGTNEKLIISILAHRNAAQRRAIRRGYAEAYGKE 973
M+TL+VP +P V++D EQL KAF GWGTNE LIISIL HRN QR+ IR YA+ Y ++
Sbjct: 34 MSTLSVPHPLPPVSDDVEQLRKAFSGWGTNEDLIISILGHRNEVQRKVIREAYAKTYEED 213
Query: 972 LLRALGDEIHGKFERAVILWTLDPAERDAVLANEEAKKSHPGGRALVEIACARTPAQLFA 793
L++AL E+ FER V LWTL+ AERDA LANE K+ + LVE+AC R+ QLF
Sbjct: 214 LIKALNKELTSDFERLVHLWTLESAERDAFLANEATKRWTSSNQVLVELACTRSSDQLFF 393
Query: 792 VKQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSAYRYDGPEVNTSLAHSEAKILHE 622
K+AYH K+SLEEDVA H TGDFRKLL+PLVS+YRY+G EVN ++A +EAKIL E
Sbjct: 394 AKKAYHALHKKSLEEDVAYHTTGDFRKLLLPLVSSYRYEGDEVNLTIAKAEAKILRE 564
>gb|CO516777.1|CO516777 s13dSG94C1200098_446882 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 554
Score = 244 bits (528), Expect = 1e-065
Identities = 105/177 (59%), Positives = 130/177 (73%)
Frame = -3 / +3
Query: 1152 MATLTVPSSVPAVAEDCEQLHKAFEGWGTNEKLIISILAHRNAAQRRAIRRGYAEAYGKE 973
M+TL+VP +P V++D EQL KAF GWGTNE LIISIL HRN QR+ IR YA+ Y ++
Sbjct: 24 MSTLSVPHPLPPVSDDVEQLRKAFSGWGTNEDLIISILGHRNEVQRKVIREAYAKTYEED 203
Query: 972 LLRALGDEIHGKFERAVILWTLDPAERDAVLANEEAKKSHPGGRALVEIACARTPAQLFA 793
L++AL E+ FER V LWTL+ AERDA LANE K+ + LVE+AC R+ QLF
Sbjct: 204 LIKALNKELTCDFERLVHLWTLESAERDAFLANEATKRWTSSNQVLVELACTRSSDQLFF 383
Query: 792 VKQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSAYRYDGPEVNTSLAHSEAKILHE 622
K+AYH K+SLEEDVA H TGDFRKLL+ LVS+YRY+G EV ++A +EAKILHE
Sbjct: 384 AKKAYHALHKKSLEEDVAYHTTGDFRKLLLLLVSSYRYEGDEVILTIAKAEAKILHE 554
>gb|CO517024.1|CO517024 s13dSG31B1000079_468594 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 544
Score = 235 bits (508), Expect = 8e-063
Identities = 99/167 (59%), Positives = 122/167 (73%)
Frame = -3 / +3
Query: 1152 MATLTVPSSVPAVAEDCEQLHKAFEGWGTNEKLIISILAHRNAAQRRAIRRGYAEAYGKE 973
M+TL+VP +P V++D EQL KAF GWGTNE LIISIL HRN QR+ IR YA+ Y ++
Sbjct: 33 MSTLSVPHPLPPVSDDVEQLRKAFSGWGTNEDLIISILGHRNEVQRKVIREAYAKTYEED 212
Query: 972 LLRALGDEIHGKFERAVILWTLDPAERDAVLANEEAKKSHPGGRALVEIACARTPAQLFA 793
L++AL E+ FER V LWTL+ AERDA LANE K+ + LVE+AC R+ QLF
Sbjct: 213 LIKALNKELTSDFERLVHLWTLESAERDAFLANEATKRWTSSNQVLVELACTRSSDQLFF 392
Query: 792 VKQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSAYRYDGPEVNTSL 652
K+AYH K+SLEEDVA H TGDFRKLL+PLVS+YRY G EVN ++
Sbjct: 393 AKKAYHALHKKSLEEDVAYHTTGDFRKLLLPLVSSYRYXGDEVNLTI 533
>gb|CO514156.1|CO514156 s13dSG75H1000080_156974 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 526
Score = 234 bits (506), Expect = 2e-062
Identities = 99/164 (60%), Positives = 121/164 (73%)
Frame = -3 / +1
Query: 1152 MATLTVPSSVPAVAEDCEQLHKAFEGWGTNEKLIISILAHRNAAQRRAIRRGYAEAYGKE 973
M+TL+VP +P V++D EQL KAF GWGTNE LIISIL HRN QR+ IR YA+ Y ++
Sbjct: 28 MSTLSVPHPLPPVSDDVEQLRKAFSGWGTNEGLIISILGHRNEVQRKVIRGAYAKTYEED 207
Query: 972 LLRALGDEIHGKFERAVILWTLDPAERDAVLANEEAKKSHPGGRALVEIACARTPAQLFA 793
L++AL E+ FER V LWTL+ AERDA LANE K+ + LVE+AC R+ QLF
Sbjct: 208 LIKALNKELTSDFERLVHLWTLESAERDAFLANEATKRWTSSNQVLVELACTRSSDQLFF 387
Query: 792 VKQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSAYRYDGPEVN 661
K+AYH K+SLEEDVA H TGDFRKLL+PLVS+YRY+G EVN
Sbjct: 388 AKKAYHALHKKSLEEDVAYHTTGDFRKLLLPLVSSYRYEGDEVN 519
>gb|CO511849.1|CO511849 s13dSG02F1200103_103598 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 558
Score = 231 bits (498), Expect = 2e-061
Identities = 97/162 (59%), Positives = 119/162 (73%)
Frame = -3 / +3
Query: 1152 MATLTVPSSVPAVAEDCEQLHKAFEGWGTNEKLIISILAHRNAAQRRAIRRGYAEAYGKE 973
M+TL+VP +P V++D EQL KAF GWGTNE LIISIL HRN QR+ IR YA+ Y ++
Sbjct: 72 MSTLSVPHPLPPVSDDVEQLRKAFSGWGTNEGLIISILGHRNEVQRKVIREAYAKTYEED 251
Query: 972 LLRALGDEIHGKFERAVILWTLDPAERDAVLANEEAKKSHPGGRALVEIACARTPAQLFA 793
L++AL E+ FER V LWTL+ AERDA LANE K+ + LVE+AC R+ QLF
Sbjct: 252 LIKALNKELTSDFERLVHLWTLESAERDAFLANEATKRWTSSNQVLVELACTRSSDQLFF 431
Query: 792 VKQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSAYRYDGPE 667
K+AYH K+SLEEDVA H TGDFRKLL+PLVS+YRY+G E
Sbjct: 432 AKKAYHALHKKSLEEDVAYHTTGDFRKLLLPLVSSYRYEGDE 557
>gb|CO512301.1|CO512301 s13dSG68D0200014_114116 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 547
Score = 228 bits (492), Expect = 1e-060
Identities = 97/165 (58%), Positives = 120/165 (72%)
Frame = -3 / +3
Query: 1134 PSSVPAVAEDCEQLHKAFEGWGTNEKLIISILAHRNAAQRRAIRRGYAEAYGKELLRALG 955
PSS V++D EQL KAF GWGTNE LIISIL HRN QR+ IR YA+ Y ++L++AL
Sbjct: 51 PSSSSPVSDDVEQLRKAFSGWGTNEGLIISILGHRNEVQRKVIREAYAKTYEEDLIKALN 230
Query: 954 DEIHGKFERAVILWTLDPAERDAVLANEEAKKSHPGGRALVEIACARTPAQLFAVKQAYH 775
E+ FER V LWTL+ AERDA LANE K+ + LVE+AC R+ QLF K+AYH
Sbjct: 231 KELTSDFERLVHLWTLESAERDAFLANEATKRWTSSNQVLVELACTRSSDQLFFAKKAYH 410
Query: 774 DRFKRSLEEDVAAHVTGDFRKLLVPLVSAYRYDGPEVNTSLAHSE 640
K+SLEEDVA + TGDFRKLL+PLVS+YRY+G EVN ++A +E
Sbjct: 411 ALHKKSLEEDVAYYTTGDFRKLLLPLVSSYRYEGDEVNLTIAKAE 545
>gb|CO513636.1|CO513636 s13dSG17A0100001_140054 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 496
Score = 217 bits (468), Expect = 3e-057
Identities = 92/156 (58%), Positives = 113/156 (72%)
Frame = -3 / +1
Query: 1152 MATLTVPSSVPAVAEDCEQLHKAFEGWGTNEKLIISILAHRNAAQRRAIRRGYAEAYGKE 973
M+TL+VP +P V++D EQL KAF GWGTNE LIISIL HRN QR+ IR YA+ Y ++
Sbjct: 28 MSTLSVPHPLPPVSDDVEQLRKAFSGWGTNEGLIISILGHRNEVQRKVIREAYAKTYEED 207
Query: 972 LLRALGDEIHGKFERAVILWTLDPAERDAVLANEEAKKSHPGGRALVEIACARTPAQLFA 793
L++AL E+ FER V LW L+ AERDA LANE K+ + LVE+AC R+ QLF
Sbjct: 208 LIKALNKELASDFERLVHLWILESAERDAFLANEATKRWTSSNQVLVELACTRSSDQLFF 387
Query: 792 VKQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSAY 685
K+AYH K+SLEEDVA H TGDFRKLL+PLVS+Y
Sbjct: 388 AKKAYHALHKKSLEEDVAYHTTGDFRKLLLPLVSSY 495
>gb|CO515484.1|CO515484 s13dSG52B0200025_418027 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 501
Score = 213 bits (459), Expect = 5e-056
Identities = 90/152 (59%), Positives = 110/152 (72%)
Frame = -3 / +2
Query: 1152 MATLTVPSSVPAVAEDCEQLHKAFEGWGTNEKLIISILAHRNAAQRRAIRRGYAEAYGKE 973
M+TL+VP +P V++D EQL KAF GWGTNE LIISIL HRN QR+ IR YA+ Y ++
Sbjct: 44 MSTLSVPHPLPPVSDDVEQLRKAFSGWGTNEGLIISILGHRNEVQRKVIREAYAKTYDED 223
Query: 972 LLRALGDEIHGKFERAVILWTLDPAERDAVLANEEAKKSHPGGRALVEIACARTPAQLFA 793
L++AL E+ FER V LWTL+ AERDA LANE K+ + LVE+AC R+ QLF
Sbjct: 224 LIKALNKELTSDFERLVHLWTLESAERDAFLANEATKRWTSSNQVLVELACTRSSDQLFF 403
Query: 792 VKQAYHDRFKRSLEEDVAAHVTGDFRKLLVPL 697
K+AYH K+SLEEDVA H TGDFRKLL+PL
Sbjct: 404 AKKAYHALHKKSLEEDVAYHTTGDFRKLLLPL 499
>gb|CO517015.1|CO517015 s13dSG31A1000071_468576 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 479
Score = 207 bits (447), Expect = 2e-054
Identities = 88/149 (59%), Positives = 107/149 (71%)
Frame = -3 / +3
Query: 1152 MATLTVPSSVPAVAEDCEQLHKAFEGWGTNEKLIISILAHRNAAQRRAIRRGYAEAYGKE 973
M+TL+VP +P V++D EQL KAF GWGTNE LIISIL HRN QR+ IR YA+ Y ++
Sbjct: 33 MSTLSVPHPLPPVSDDVEQLRKAFSGWGTNEDLIISILGHRNEVQRKVIREAYAKTYEED 212
Query: 972 LLRALGDEIHGKFERAVILWTLDPAERDAVLANEEAKKSHPGGRALVEIACARTPAQLFA 793
L++AL E+ FER V LWTL+ AERDA LANE K+ + LVE+AC R+ QLF
Sbjct: 213 LIKALNKELTSDFERLVHLWTLESAERDAFLANEATKRWTSSNQVLVELACTRSSDQLFF 392
Query: 792 VKQAYHDRFKRSLEEDVAAHVTGDFRKLL 706
K+AYH K+SLEEDVA H TGDFRKLL
Sbjct: 393 AKKAYHALHKKSLEEDVAYHTTGDFRKLL 479
>gb|CO511888.1|CO511888 s13dSG05B0800073_103676 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 579
Score = 114 bits (243), Expect(2) = 8e-048
Identities = 47/83 (56%), Positives = 59/83 (71%)
Frame = -3 / +1
Query: 1110 EDCEQLHKAFEGWGTNEKLIISILAHRNAAQRRAIRRGYAEAYGKELLRALGDEIHGKFE 931
ED E L KAFEGWGT+EK +I+IL HRN+ Q + IR+ Y Y ++L++ L EI G FE
Sbjct: 88 EDAEALRKAFEGWGTDEKTVITILGHRNSNQIQQIRKAYEGIYNEDLIKRLESEIKGDFE 267
Query: 930 RAVILWTLDPAERDAVLANEEAK 862
+AV W L+PAERDAVLAN K
Sbjct: 268 KAVYRWILEPAERDAVLANVAIK 336
Score = 91.8 bits (194), Expect(2) = 8e-048
Identities = 41/84 (48%), Positives = 56/84 (66%)
Frame = -3 / +1
Query: 867 AKKSHPGGRALVEIACARTPAQLFAVKQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSA 688
A KS +VEI+ +P +L V++AY R+K SLEED+AAH +G R+LLV LV+A
Sbjct: 328 AIKSGKNYNVIVEISSVLSPEELLNVRRAYVKRYKHSLEEDLAAHTSGHLRQLLVGLVTA 507
Query: 687 YRYDGPEVNTSLAHSEAKILHEKI 616
+ Y G E+N LA +EA ILHE +
Sbjct: 508 FTYVGDEINPKLAXTEAGILHESV 579
>gb|CO516334.1|CO516334 s13dSG99C0300018_445996 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 406
Score = 175 bits (376), Expect = 1e-044
Identities = 74/133 (55%), Positives = 93/133 (69%)
Frame = -3 / +2
Query: 1152 MATLTVPSSVPAVAEDCEQLHKAFEGWGTNEKLIISILAHRNAAQRRAIRRGYAEAYGKE 973
M+TL+VP +P V++D EQL KAF GWGTNE LIISIL HRN QR+ IR YA+ Y ++
Sbjct: 8 MSTLSVPHPLPPVSDDVEQLRKAFSGWGTNEDLIISILGHRNEVQRKVIREAYAKTYEED 187
Query: 972 LLRALGDEIHGKFERAVILWTLDPAERDAVLANEEAKKSHPGGRALVEIACARTPAQLFA 793
L++AL E+ FER V LWTL+ AERDA LANE K+ + LVE+AC R+ QLF
Sbjct: 188 LIKALNKELTSDFERLVHLWTLESAERDAFLANEATKRWTSSNQVLVELACTRSSDQLFF 367
Query: 792 VKQAYHDRFKRSL 754
K+AYH K+SL
Sbjct: 368 AKKAYHALHKKSL 406
>emb|Y11348.1|MSNANN M.sativa mRNA for annexin-like protein
Length = 1533
Score = 97.7 bits (207), Expect(2) = 1e-042
Identities = 41/89 (46%), Positives = 59/89 (66%)
Frame = -3 / +2
Query: 1152 MATLTVPSSVPAVAEDCEQLHKAFEGWGTNEKLIISILAHRNAAQRRAIRRGYAEAYGKE 973
MATL +P P+ +D QL++AF+G+G + +I+ILAHR+A QR +++ Y Y +E
Sbjct: 113 MATLILPPIPPSPRDDAMQLYRAFKGFGCDTTAVINILAHRDATQRAYLQQEYKATYSEE 292
Query: 972 LLRALGDEIHGKFERAVILWTLDPAERDA 886
L + L E+ GK E AV+LW DPA RDA
Sbjct: 293 LSKRLVSELKGKLETAVLLWLPDPAARDA 379
Score = 95.5 bits (202), Expect(2) = 1e-042
Identities = 42/123 (34%), Positives = 67/123 (54%)
Frame = -3 / +2
Query: 612 KKAYSDEEIIRILTTRSKAQLLATFNSYKDQFTHAINKDLKADPKDEFLSTLRAIIRCFT 433
K ++ ++I + RS A L A + Y D + H++ K +K + F L I C T
Sbjct: 653 KLGTDEKTFVQIFSERSSAHLAAVSSYYHDMYGHSLKKAVKNEASGNFGLALLTITECAT 832
Query: 432 CPDRYFEKVIRLALGGMGTDEDDLTRVVTTRAEVDLKLIKEAYQKRNSVPLERAVAKDTT 253
P +YF KV+ A+ G+GT++ L RV+ TR E+D++ IK Y K+ L AV +T+
Sbjct: 833 NPAKYFAKVLYKAMKGLGTNDSTLIRVIVTRTEIDMQYIKAEYAKKYKKTLNDAVHSETS 1012
Query: 252 RDY 244
+Y
Sbjct: 1013 GNY 1021
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,972,222
Number of Sequences: 7669
Number of extensions: 120809
Number of successful extensions: 1123
Number of sequences better than 1.0e-020: 15
length of database: 1,248,568
effective HSP length: 44
effective length of database: 911,132
effective search space used: 349874688
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)