TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161272.2.21
         (693 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO515781.1|CO515781  s13dSG77H0100016_419711 Glandular tr...   118   3e-044
gb|DR159680.1|DR159680  EST34 Medicago sativa cDNA-AFLP Medi...   105   4e-024

>gb|CO515781.1|CO515781 s13dSG77H0100016_419711 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 550

 Score =  118 bits (252), Expect(3) = 3e-044
 Identities = 48/88 (54%), Positives = 59/88 (67%)
 Frame = +3 / +2

                                                                       
Query: 3   YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
           Y  LIN L  NGI+P+VTL ++D PQAL D Y G+L   ++KD+T++A VCF  FGD VK
Sbjct: 11  YNNLINELIRNGIQPHVTLHNYDLPQALEDEYEGWLSREVIKDFTNYADVCFREFGDRVK 190

                                       
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSP 266
            W T NEP  F+  SY  GI  P RCSP
Sbjct: 191 YWTTVNEPNIFAVGSYDQGISPPRRCSP 274




 Score = 46.4 bits (95), Expect(3) = 3e-044
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = +3 / +3

                                                  
Query: 420 MGRVPYDNMFLDDQAQERSIDYNLGWFMEPVVRGDYPFS 536
           +G VP  N   D  A +R  D+ LGW MEP++ GDYP S
Sbjct: 432 LGVVPQTNTEKDRAACQRISDFYLGWIMEPLLHGDYPDS 548




 Score = 46.4 bits (95), Expect(3) = 3e-044
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3 / +2

                                                        
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMG 425
           GNS  EPY+V H++L AH+  V  Y + YR  ++  +GI    +G
Sbjct: 302 GNSTFEPYLVVHHILLAHSSAVRLYRRTYREEQNGFVGISIYXIG 436



>gb|DR159680.1|DR159680 EST34 Medicago sativa cDNA-AFLP Medicago sativa cDNA clone S15 5',
           mRNA sequence
          Length = 352

 Score =  105 bits (225), Expect = 4e-024
 Identities = 45/97 (46%), Positives = 59/97 (60%)
 Frame = +3 / +3

                                                                       
Query: 117 RIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCANPTGN 296
           RIV D+ D+A++CF  FGD VK+W T NEP + S  +Y  G FAPGRCS         G+
Sbjct: 21  RIVDDFRDYAELCFKEFGDRVKHWITLNEPWSVSMNAYAYGKFAPGRCSDWLNLNCTGGD 200

                                                
Query: 297 SLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
           S  EPY+ AH  L AHA  V  Y   Y+ +++ +IGI
Sbjct: 201 SGAEPYLAAHYQLLAHAAAVKLYRTKYQASQNGKIGI 311



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 6,398,452
Number of Sequences: 7669
Number of extensions: 90577
Number of successful extensions: 1371
Number of sequences better than 1.0e-020: 3
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 174176360
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)