TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161072.2.3
         (885 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|X58180.1|MSPAL  M.sativa PAL mRNA for phenylalanine ammo...   136   1e-053

>emb|X58180.1|MSPAL M.sativa PAL mRNA for phenylalanine ammonia-lyase
          Length = 2409

 Score =  136 bits (291), Expect(3) = 1e-053
 Identities = 52/102 (50%), Positives = 70/102 (68%)
 Frame = +3 / +1

                                                                        
Query: 228  SVFSRITKFEEELRAVLPQXXXXXXXXXXXGTAPVANRIADSRSFPLYRFVRQELGCVFL 407
            S+F +I  FEEEL+ +LP+           G   + N+I   RS+PLY+FVR+ELG   L
Sbjct: 1963 SIFQKIATFEEELKTLLPKEVESARTAYESGNPTIPNKINGCRSYPLYKFVREELGTGLL 2142

                                                      
Query: 408  TGEKLKSPGEECNKVFLGISQGKLVDPMLECLKEWDGKPLPI 533
            TGE + SPGEEC+K+F  + QGK++DP+LECL EW+G PLPI
Sbjct: 2143 TGENVISPGEECDKLFSAMCQGKIIDPLLECLGEWNGAPLPI 2268




 Score = 72.1 bits (151), Expect(3) = 1e-053
 Identities = 29/52 (55%), Positives = 38/52 (73%)
 Frame = +2 / +1

                                                                
Query: 2    KNTVTQVAKKVLTMNPSGDLSSARFSEKELISAIDREAVFTYAEDAASASLP 157
            KNTV+QVAKK LTM  +G+L  +RF EK+L+  +DRE VF Y +D  SA+ P
Sbjct: 1732 KNTVSQVAKKTLTMGVNGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYP 1887




 Score = 35.0 bits (70), Expect(3) = 1e-053
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +3 / +1

                                 
Query: 159  LMQKLRAVLVDHALSSGDAER 221
            L QKLR VLVDHAL +G++E+
Sbjct: 1888 LSQKLRQVLVDHALVNGESEK 1950



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 5,153,551
Number of Sequences: 7669
Number of extensions: 61810
Number of successful extensions: 672
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 233470440
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)