TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738980.2.1
(917 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515733.1|CO515733 s13dSG77B1200101_419615 Glandular tr... 98 2e-039
gb|CO512932.1|CO512932 s13dSG86E0600039_121790 Glandular tr... 95 6e-036
gb|CO512411.1|CO512411 s13dSG80F0100011_114336 Glandular tr... 95 2e-034
gb|CO511777.1|CO511777 s13dSG01H1100096_103454 Glandular tr... 100 7e-033
gb|CO513560.1|CO513560 s13dSG12H0800064_139902 Glandular tr... 88 2e-032
gb|CO512266.1|CO512266 s13dSG03H1100092_114046 Glandular tr... 67 3e-032
gb|CO512672.1|CO512672 s13dSG19C0200006_121270 Glandular tr... 92 9e-032
gb|CO512017.1|CO512017 s13dSG07H0100016_103934 Glandular tr... 68 6e-031
gb|CO515660.1|CO515660 s13dSG60C0900070_419469 Glandular tr... 100 2e-030
gb|AJ410143.1|AJ410143 AJ410143 Medicago sativa library (Ka... 84 2e-029
gb|CO516142.1|CO516142 s13dSG65H0600060_445612 Glandular tr... 96 1e-028
gb|CO516002.1|CO516002 s13dSG61G0700056_445332 Glandular tr... 92 6e-027
gb|CO513935.1|CO513935 s13dSG71D0500042_156532 Glandular tr... 68 2e-026
gb|CO516448.1|CO516448 s13dSG28A0500034_446224 Glandular tr... 88 2e-026
gb|AJ888486.1|AJ888486 AJ888486 Medicago sativa subsp. x va... 68 4e-026
gb|CO512339.1|CO512339 s13dSG68G0900068_114192 Glandular tr... 87 5e-026
gb|AJ888508.1|AJ888508 AJ888508 Medicago sativa subsp. x va... 68 1e-025
gb|CO512012.1|CO512012 s13dSG07G0600052_103924 Glandular tr... 65 2e-025
>gb|CO515733.1|CO515733 s13dSG77B1200101_419615 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 567
Score = 98.2 bits (208), Expect(3) = 2e-039
Identities = 41/77 (53%), Positives = 50/77 (64%)
Frame = +1 / +2
Query: 79 GGELQLLGSWYSPYVIRAKVALGLKGLSYEFVXXXXXXXXXXXXXXNPVHRKVPVLVHGG 258
G L LLG W SP+V+R K AL LKG+ Y++V NPV+RKVPVLVH G
Sbjct: 41 GDSLTLLGFWGSPFVLRVKWALELKGIQYQYVEEDFRNKSDMLLQYNPVYRKVPVLVHDG 220
Query: 259 RPVCESLVILQYVDETW 309
+ + ESLVIL+YVDE W
Sbjct: 221 KSISESLVILEYVDEIW 271
Score = 52.4 bits (108), Expect(3) = 2e-039
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +1 / +2
Query: 511 KGKPFFGGDAVGLVDIALGSFVVWIRVVDEAAGVKLLD 624
+G+ +FGG+ +G DIA+G F W RV++E G+ L+D
Sbjct: 452 EGRRYFGGENIGFADIAVGIFGFWARVIEETVGINLID 565
Score = 45.1 bits (92), Expect(3) = 2e-039
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +1 / +2
Query: 325 PLLPADAYDRAMARFWAAYVDDKFYKEWNRLFWSTTAEKAAEA 453
PLLP D Y+RA ARFWA + DDK + F+ E+ A
Sbjct: 281 PLLPHDPYERAKARFWAKFADDKCVPAFIATFFKIGEEQQKAA 409
>gb|CO512932.1|CO512932 s13dSG86E0600039_121790 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 569
Score = 94.5 bits (200), Expect(3) = 6e-036
Identities = 36/75 (48%), Positives = 50/75 (66%)
Frame = +1 / +2
Query: 85 ELQLLGSWYSPYVIRAKVALGLKGLSYEFVXXXXXXXXXXXXXXNPVHRKVPVLVHGGRP 264
+++L+G W SP+V R + AL LKG+ YE+V NPVH+KVPVLVH +P
Sbjct: 35 DVKLVGFWVSPFVKRVEWALKLKGVDYEYVEEDIFNKTPLLLELNPVHKKVPVLVHAQKP 214
Query: 265 VCESLVILQYVDETW 309
+ ES +IL+Y+DETW
Sbjct: 215 IAESFIILEYIDETW 259
Score = 50.6 bits (104), Expect(3) = 6e-036
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1 / +2
Query: 511 KGKPFFGGDAVGLVDIALGSFVVWIRVVDEAAGVKLLDEAK 633
KGK FFGGD +G +D+ALG W+ V +E ++++D K
Sbjct: 440 KGKKFFGGDNIGYLDLALGWISYWLPVFEEVGSMQIIDPLK 562
Score = 38.6 bits (78), Expect(3) = 6e-036
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1 / +2
Query: 322 TPLLPADAYDRAMARFWAAYVDDK 393
+PLLP Y+RA+ARFWA + + K
Sbjct: 266 SPLLPQHPYERALARFWADFAEQK 337
>gb|CO512411.1|CO512411 s13dSG80F0100011_114336 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 578
Score = 95.0 bits (201), Expect(3) = 2e-034
Identities = 35/80 (43%), Positives = 51/80 (63%)
Frame = +1 / +1
Query: 70 MADGGELQLLGSWYSPYVIRAKVALGLKGLSYEFVXXXXXXXXXXXXXXNPVHRKVPVLV 249
+A E+ LL SW SP+ +R ++AL KG+ +E+ NPVH+K+PVL+
Sbjct: 70 LAMADEVILLDSWASPFGMRLRIALAEKGIKHEYKEEDLSNKSPLLLQMNPVHKKIPVLI 249
Query: 250 HGGRPVCESLVILQYVDETW 309
H G+P+CESLV +QY+DE W
Sbjct: 250 HNGKPICESLVAVQYIDEVW 309
Score = 48.3 bits (99), Expect(3) = 2e-034
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +1 / +1
Query: 322 TPLLPADAYDRAMARFWAAYVDDKFYKEWNRLF 420
+PLLP+D Y R+ ARFWA YVD K Y+ L+
Sbjct: 319 SPLLPSDPYQRSRARFWADYVDKKIYEGGRNLW 417
Score = 35.4 bits (71), Expect(3) = 2e-034
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / +1
Query: 517 KPFFGGDAVGLVDIALGSFVVWIR 588
K +FGGD +G VD+AL F W +
Sbjct: 499 KTYFGGDKLGFVDVALIPFYTWFK 570
>gb|CO511777.1|CO511777 s13dSG01H1100096_103454 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 574
Score = 100 bits (212), Expect(3) = 7e-033
Identities = 39/78 (50%), Positives = 52/78 (66%)
Frame = +1 / +2
Query: 76 DGGELQLLGSWYSPYVIRAKVALGLKGLSYEFVXXXXXXXXXXXXXXNPVHRKVPVLVHG 255
D GE+QLLG SP+V R ++AL LKG+ Y ++ NP+H+KVPV VH
Sbjct: 101 DQGEVQLLGVGGSPFVRRVQIALKLKGIEYTYIEENLRNKSDLLLKYNPIHKKVPVFVHN 280
Query: 256 GRPVCESLVILQYVDETW 309
G+P+ ESLVIL+Y+DETW
Sbjct: 281 GKPLAESLVILEYIDETW 334
Score = 48.7 bits (100), Expect(3) = 7e-033
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +1 / +2
Query: 325 PLLPADAYDRAMARFWAAYVDDKFYKEWNRLFWSTTAEKAAEALGVVVPVVETLEQAFR 501
P+ P Y++A+ARFW+ ++DDK ++ W+ E+ + + + +E LE +
Sbjct: 344 PIFPQQPYEKALARFWSRFIDDKILPAISKAAWTVNKEEREKGIEESLQTLEFLENELK 520
Score = 24.4 bits (47), Expect(3) = 7e-033
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1 / +2
Query: 523 FFGGDAVGLVDIA 561
FFGG+ + +VDIA
Sbjct: 527 FFGGENINIVDIA 565
>gb|CO513560.1|CO513560 s13dSG12H0800064_139902 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 88.1 bits (186), Expect(3) = 2e-032
Identities = 35/75 (46%), Positives = 49/75 (65%)
Frame = +1 / +3
Query: 85 ELQLLGSWYSPYVIRAKVALGLKGLSYEFVXXXXXXXXXXXXXXNPVHRKVPVLVHGGRP 264
E++L G SP+ R ++AL LKG+ Y++ NPV++KVPVLVH G+P
Sbjct: 63 EVKLFGLVGSPFSTRVEIALKLKGVEYKYEEEKQGNLSDTVIKYNPVYKKVPVLVHNGKP 242
Query: 265 VCESLVILQYVDETW 309
+ ESLVIL+Y+DETW
Sbjct: 243 ISESLVILEYIDETW 287
Score = 45.1 bits (92), Expect(3) = 2e-032
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = +1 / +3
Query: 325 PLLPADAYDRAMARFWAAYVDDK 393
P+LP+D Y RA+ARFW+ ++DDK
Sbjct: 297 PILPSDPYKRALARFWSKFIDDK 365
Score = 41.8 bits (85), Expect(3) = 2e-032
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1 / +3
Query: 523 FFGGDAVGLVDIALGSFVVWIRVVDEAAGVKL 618
FFGGD +GL+DI W +V E G+KL
Sbjct: 480 FFGGDEIGLIDITAVFIAXWFPIVQEVTGLKL 575
>gb|CO512266.1|CO512266 s13dSG03H1100092_114046 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 573
Score = 66.6 bits (139), Expect(4) = 3e-032
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +3
Query: 217 NPVHRKVPVLVHGGRPVCESLVILQYVDETW 309
NPVH+K+PVL+H G+P+CESL+ QY+DE W
Sbjct: 225 NPVHKKIPVLIHNGKPICESLIAAQYIDEVW 317
Score = 50.1 bits (103), Expect(4) = 3e-032
Identities = 20/42 (47%), Positives = 26/42 (61%)
Frame = +1 / +3
Query: 322 TPLLPADAYDRAMARFWAAYVDDKFYKEWNRLFWSTTAEKAA 447
+PLLP+D Y R+ ARFWA YVD K Y+ L+ E+ A
Sbjct: 327 SPLLPSDPYQRSQARFWADYVDKKIYEVGRNLWTKKGEEQEA 452
Score = 36.3 bits (73), Expect(4) = 3e-032
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1 / +3
Query: 70 MADGGELQLLGSWYSPYVIRAKVALGLKGLSYEF 171
+A E+ LL W SP+ IR ++AL KG+ +E+
Sbjct: 78 LAMADEVILLDYWVSPFGIRVRIALAEKGIKHEY 179
Score = 35.4 bits (71), Expect(4) = 3e-032
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1 / +3
Query: 517 KPFFGGDAVGLVDIALGSFVVW 582
K +FGGD +G VD+AL F W
Sbjct: 507 KTYFGGDKIGFVDVALIPFYTW 572
>gb|CO512672.1|CO512672 s13dSG19C0200006_121270 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 91.8 bits (194), Expect(3) = 9e-032
Identities = 35/75 (46%), Positives = 49/75 (65%)
Frame = +1 / +2
Query: 85 ELQLLGSWYSPYVIRAKVALGLKGLSYEFVXXXXXXXXXXXXXXNPVHRKVPVLVHGGRP 264
+++L+G W SP+V R + AL LKG+ YE+V NPVH+KVPVLVH +P
Sbjct: 89 DVKLVGFWVSPFVKRVEWALKLKGVDYEYVEEDIFNKTPLLLELNPVHKKVPVLVHAQKP 268
Query: 265 VCESLVILQYVDETW 309
+ E +IL+Y+DETW
Sbjct: 269 IAELFIILEYIDETW 313
Score = 39.1 bits (79), Expect(3) = 9e-032
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1 / +2
Query: 511 KGKPFFGGDAVGLVDIALGSFVVW 582
KGK FFGGD +G +D+ALG W
Sbjct: 494 KGKKFFGGDNIGYLDLALGWISYW 565
Score = 38.6 bits (78), Expect(3) = 9e-032
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1 / +2
Query: 322 TPLLPADAYDRAMARFWAAYVDDK 393
+PLLP Y+RA+ARFWA + + K
Sbjct: 320 SPLLPQHPYERALARFWADFAEQK 391
>gb|CO512017.1|CO512017 s13dSG07H0100016_103934 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 67.5 bits (141), Expect(4) = 6e-031
Identities = 20/31 (64%), Positives = 28/31 (90%)
Frame = +1 / +2
Query: 217 NPVHRKVPVLVHGGRPVCESLVILQYVDETW 309
NPVH+K+PVL+H G+P+CESL+ +QY+DE W
Sbjct: 209 NPVHKKIPVLIHNGKPICESLIAVQYIDEVW 301
Score = 50.1 bits (103), Expect(4) = 6e-031
Identities = 20/42 (47%), Positives = 26/42 (61%)
Frame = +1 / +2
Query: 322 TPLLPADAYDRAMARFWAAYVDDKFYKEWNRLFWSTTAEKAA 447
+PLLP+D Y R+ ARFWA YVD K Y+ L+ E+ A
Sbjct: 311 SPLLPSDPYQRSQARFWADYVDKKIYEVGRNLWTKKGEEQEA 436
Score = 35.4 bits (71), Expect(4) = 6e-031
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1 / +2
Query: 70 MADGGELQLLGSWYSPYVIRAKVALGLKGLSYEF 171
+A E+ LL W SP+ +R ++AL KG+ +E+
Sbjct: 62 LAMANEVILLDYWVSPFGMRVRIALAEKGIKHEY 163
Score = 30.9 bits (61), Expect(4) = 6e-031
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1 / +2
Query: 517 KPFFGGDAVGLVDIALGSF 573
K +FGGD +G VD+AL F
Sbjct: 491 KTYFGGDKIGFVDVALIPF 547
>gb|CO515660.1|CO515660 s13dSG60C0900070_419469 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 100 bits (212), Expect(2) = 2e-030
Identities = 39/78 (50%), Positives = 52/78 (66%)
Frame = +1 / +1
Query: 76 DGGELQLLGSWYSPYVIRAKVALGLKGLSYEFVXXXXXXXXXXXXXXNPVHRKVPVLVHG 255
D GE+QLLG SP+V R ++AL LKG+ Y ++ NP+H+KVPV VH
Sbjct: 100 DQGEVQLLGVGGSPFVRRVQIALKLKGIEYTYIEENLRNKSDLLLKYNPIHKKVPVFVHN 279
Query: 256 GRPVCESLVILQYVDETW 309
G+P+ ESLVIL+Y+DETW
Sbjct: 280 GKPLAESLVILEYIDETW 333
Score = 47.3 bits (97), Expect(2) = 2e-030
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +1 / +1
Query: 325 PLLPADAYDRAMARFWAAYVDDKFYKEWNRLFWSTTAEKAAEALGVVVPVVETLEQAFR 501
P+ P Y +A+ARFW+ ++DDK ++ W+ E+ + + + +E LE +
Sbjct: 343 PIFPQQPYGKALARFWSRFIDDKILPAISKAAWTVNKEEREKGIEESLQALEFLENELK 519
>gb|AJ410143.1|AJ410143 AJ410143 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U62, mRNA sequence
Length = 822
Score = 84.0 bits (177), Expect(3) = 2e-029
Identities = 32/66 (48%), Positives = 44/66 (66%)
Frame = +1 / +1
Query: 112 SPYVIRAKVALGLKGLSYEFVXXXXXXXXXXXXXXNPVHRKVPVLVHGGRPVCESLVILQ 291
SP+ R ++AL LKG+ Y++ NPV++KVPVLVH G+P+ ESLVIL+
Sbjct: 10 SPFSTRVEIALKLKGVEYKYEEEKQGNLSDTVIKYNPVYKKVPVLVHNGKPISESLVILE 189
Query: 292 YVDETW 309
Y+DETW
Sbjct: 190 YIDETW 207
Score = 45.1 bits (92), Expect(3) = 2e-029
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = +1 / +1
Query: 325 PLLPADAYDRAMARFWAAYVDDK 393
P+LP+D Y RA+ARFW+ ++DDK
Sbjct: 217 PILPSDPYKRALARFWSKFIDDK 285
Score = 36.8 bits (74), Expect(3) = 2e-029
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +1 / +1
Query: 523 FFGGDAVGLVDIALGSFVVWIRVVDEAAGVKLLDEAKFPALTAWAERF 666
FFGGD +GL+DI W + L K P L W + F
Sbjct: 400 FFGGDEIGLIDITAVFIAFWSLLYKFNQDSNLFTS*KIPKLYNWTQEF 543
>gb|CO516142.1|CO516142 s13dSG65H0600060_445612 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 368
Score = 96.4 bits (204), Expect(2) = 1e-028
Identities = 40/77 (51%), Positives = 50/77 (64%)
Frame = +1 / +1
Query: 79 GGELQLLGSWYSPYVIRAKVALGLKGLSYEFVXXXXXXXXXXXXXXNPVHRKVPVLVHGG 258
G L LLG W SP+V+R K AL LKG+ Y++V NPV++KVPVLVH G
Sbjct: 43 GDSLTLLGFWGSPFVLRVKWALELKGVQYQYVEEDFRNKSDMLLQYNPVYKKVPVLVHDG 222
Query: 259 RPVCESLVILQYVDETW 309
+ + ESLVIL+YVDE W
Sbjct: 223 KSISESLVILEYVDEIW 273
Score = 44.6 bits (91), Expect(2) = 1e-028
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +1 / +1
Query: 325 PLLPADAYDRAMARFWAAYVDDK 393
PLLP D Y+RA ARFWA + DDK
Sbjct: 283 PLLPHDPYERAKARFWAKFADDK 351
>gb|CO516002.1|CO516002 s13dSG61G0700056_445332 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 482
Score = 92.3 bits (195), Expect(2) = 6e-027
Identities = 36/74 (48%), Positives = 48/74 (64%)
Frame = +1 / +3
Query: 88 LQLLGSWYSPYVIRAKVALGLKGLSYEFVXXXXXXXXXXXXXXNPVHRKVPVLVHGGRPV 267
++LLG+ SP+V R ++AL LKG+ YEF NPVH+KVPV VH +P+
Sbjct: 78 VKLLGATGSPFVCRVQIALKLKGIEYEFAEENLATKSEQLLKYNPVHKKVPVFVHNEKPI 257
Query: 268 CESLVILQYVDETW 309
ESLVIL+Y+DE W
Sbjct: 258 SESLVILEYIDEVW 299
Score = 43.2 bits (88), Expect(2) = 6e-027
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +1 / +3
Query: 325 PLLPADAYDRAMARFWAAYVDDK 393
P+LP+D + RA+ARFW+ ++DDK
Sbjct: 309 PILPSDPHQRALARFWSKFIDDK 377
>gb|CO513935.1|CO513935 s13dSG71D0500042_156532 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 415
Score = 67.5 bits (141), Expect(3) = 2e-026
Identities = 20/31 (64%), Positives = 28/31 (90%)
Frame = +1 / +2
Query: 217 NPVHRKVPVLVHGGRPVCESLVILQYVDETW 309
NPVH+K+PVL+H G+P+CESL+ +QY+DE W
Sbjct: 212 NPVHKKIPVLIHNGKPICESLIAVQYIDEVW 304
Score = 48.7 bits (100), Expect(3) = 2e-026
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +1 / +2
Query: 322 TPLLPADAYDRAMARFWAAYVDDKFYKEWNRLF 420
+PLLP+D Y R+ ARFWA YVD K Y+ L+
Sbjct: 314 SPLLPSDPYQRSQARFWADYVDKKIYEVGRNLW 412
Score = 35.4 bits (71), Expect(3) = 2e-026
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1 / +2
Query: 70 MADGGELQLLGSWYSPYVIRAKVALGLKGLSYEF 171
+A E+ LL W SP+ +R ++AL KG+ +E+
Sbjct: 65 LAMANEVILLDYWVSPFGMRVRIALAEKGIKHEY 166
>gb|CO516448.1|CO516448 s13dSG28A0500034_446224 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 514
Score = 88.1 bits (186), Expect(2) = 2e-026
Identities = 34/75 (45%), Positives = 47/75 (62%)
Frame = +1 / +2
Query: 85 ELQLLGSWYSPYVIRAKVALGLKGLSYEFVXXXXXXXXXXXXXXNPVHRKVPVLVHGGRP 264
+++LLG SP+ R ++AL KG+ YEFV NPVH+K+PV VH +P
Sbjct: 92 DVKLLGIVGSPFFCRVQIALKFKGIEYEFVKEDLTNKSDLLLKYNPVHKKIPVFVHNEKP 271
Query: 265 VCESLVILQYVDETW 309
+ ESLVIL+Y+DE W
Sbjct: 272 ISESLVILEYIDEVW 316
Score = 45.5 bits (93), Expect(2) = 2e-026
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1 / +2
Query: 325 PLLPADAYDRAMARFWAAYVDDKFYKEWNRLFWSTTAEKAAE 450
P+LP+D Y +++ARFW+ ++DDK + ++ EK E
Sbjct: 326 PILPSDPYQKSLARFWSKFIDDKIVTSSFKAVYAVNDEKERE 451
>gb|AJ888486.1|AJ888486 AJ888486 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 777
Score = 67.5 bits (141), Expect(3) = 4e-026
Identities = 20/31 (64%), Positives = 28/31 (90%)
Frame = +1 / +1
Query: 217 NPVHRKVPVLVHGGRPVCESLVILQYVDETW 309
NPVH+K+PVL+H G+P+CESL+ +QY+DE W
Sbjct: 49 NPVHKKIPVLIHNGKPICESLIAVQYIDEVW 141
Score = 50.1 bits (103), Expect(3) = 4e-026
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +1 / +1
Query: 322 TPLLPADAYDRAMARFWAAYVDDKFYKEWNRLFWSTTAEK 441
+PLLP+D Y R+ ARFWA YVD K Y+ L+ S E+
Sbjct: 151 SPLLPSDPYQRSQARFWADYVDKKIYEGGRNLWASKGEEQ 270
Score = 32.7 bits (65), Expect(3) = 4e-026
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1 / +1
Query: 517 KPFFGGDAVGLVDIALGSFVVWIR 588
+ +FGGD +G VD+ L F W +
Sbjct: 331 RTYFGGDXLGFVDVTLIPFFTWFK 402
>gb|CO512339.1|CO512339 s13dSG68G0900068_114192 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 515
Score = 86.8 bits (183), Expect(2) = 5e-026
Identities = 34/75 (45%), Positives = 46/75 (61%)
Frame = +1 / +2
Query: 85 ELQLLGSWYSPYVIRAKVALGLKGLSYEFVXXXXXXXXXXXXXXNPVHRKVPVLVHGGRP 264
+++LLG SP+ R + AL KG+ YEFV NPVH+K+PV VH +P
Sbjct: 92 DVKLLGIVGSPFFCRVQTALKFKGIEYEFVKEDLTNKSDLLLKYNPVHKKIPVFVHNEKP 271
Query: 265 VCESLVILQYVDETW 309
+ ESLVIL+Y+DE W
Sbjct: 272 ISESLVILEYIDEVW 316
Score = 45.5 bits (93), Expect(2) = 5e-026
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1 / +2
Query: 325 PLLPADAYDRAMARFWAAYVDDKFYKEWNRLFWSTTAEKAAE 450
P+LP+D Y +++ARFW+ ++DDK + ++ EK E
Sbjct: 326 PILPSDPYQKSLARFWSKFIDDKIVTSSFKAVYAVNDEKERE 451
>gb|AJ888508.1|AJ888508 AJ888508 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 739
Score = 67.5 bits (141), Expect(3) = 1e-025
Identities = 20/31 (64%), Positives = 28/31 (90%)
Frame = +1 / +1
Query: 217 NPVHRKVPVLVHGGRPVCESLVILQYVDETW 309
NPVH+K+PVL+H G+P+CESL+ +QY+DE W
Sbjct: 49 NPVHKKIPVLIHNGKPICESLIAVQYIDEVW 141
Score = 48.7 bits (100), Expect(3) = 1e-025
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +1 / +1
Query: 322 TPLLPADAYDRAMARFWAAYVDDKFYKEWNRLF 420
+PLLP+D Y R+ ARFWA YVD K Y+ L+
Sbjct: 151 SPLLPSDPYQRSQARFWADYVDKKIYEGGRNLW 249
Score = 32.2 bits (64), Expect(3) = 1e-025
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1 / +1
Query: 517 KPFFGGDAVGLVDIALGSFVVWIR 588
+ +FGGD +G VD+ L F W +
Sbjct: 331 RTYFGGDKLGFVDVXLIPFYTWFK 402
>gb|CO512012.1|CO512012 s13dSG07G0600052_103924 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 506
Score = 65.2 bits (136), Expect(3) = 2e-025
Identities = 19/31 (61%), Positives = 28/31 (90%)
Frame = +1 / +2
Query: 217 NPVHRKVPVLVHGGRPVCESLVILQYVDETW 309
+PVH+K+PVL+H G+P+CESL+ +QY+DE W
Sbjct: 227 DPVHKKIPVLIHNGKPICESLIAVQYIDEVW 319
Score = 50.1 bits (103), Expect(3) = 2e-025
Identities = 20/42 (47%), Positives = 26/42 (61%)
Frame = +1 / +2
Query: 322 TPLLPADAYDRAMARFWAAYVDDKFYKEWNRLFWSTTAEKAA 447
+PLLP+D Y R+ ARFWA YVD K Y+ L+ E+ A
Sbjct: 329 SPLLPSDPYQRSQARFWADYVDKKIYEVGRNLWTKKGEEQEA 454
Score = 32.7 bits (65), Expect(3) = 2e-025
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1 / +2
Query: 94 LLGSWYSPYVIRAKVALGLKGLSYEF 171
LL W SP+ +R ++AL KG+ +E+
Sbjct: 104 LLDYWVSPFGMRVRIALAEKGIKHEY 181
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,943,948
Number of Sequences: 7669
Number of extensions: 51817
Number of successful extensions: 649
Number of sequences better than 1.0e-020: 22
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 240725862
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)