TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738978.2.1
(572 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516220.1|CO516220 s13dSG67H0300028_445768 Glandular tr... 97 2e-021
>gb|CO516220.1|CO516220 s13dSG67H0300028_445768 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 502
Score = 96.8 bits (205), Expect = 2e-021
Identities = 35/81 (43%), Positives = 52/81 (64%)
Frame = -3 / +3
Query: 489 CNAGQLAACAPAITAGARPSASCCSNLKAQQGCFCQFVKNPTYGRYINSPNARKVVASCG 310
C+ QL++C AIT+ PS CCS +K Q+ C CQ++KNP +++N+PNARKV +CG
Sbjct: 177 CSPVQLSSCVSAITSSTPPSNLCCSKIKEQRPCLCQYMKNPNLRKFVNTPNARKVANTCG 356
Query: 309 VSVPRC*YVYVCAMCMHVRAH 247
PRC* + +C+ + H
Sbjct: 357 TPFPRC*MFKLEGVCICLCVH 419
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,818,354
Number of Sequences: 7669
Number of extensions: 53801
Number of successful extensions: 1726
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 139186711
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)