TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1716352.2.1
         (990 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO514732.1|CO514732  s13dSG55E0300023_328124 Glandular tr...   123   3e-029
gb|CO512850.1|CO512850  s13dSG20E0100003_121626 Glandular tr...   109   7e-025
gb|AF191305.1|AF191305  Medicago sativa glycine-rich RNA bin...   107   2e-024

>gb|CO514732.1|CO514732 s13dSG55E0300023_328124 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 468

 Score =  123 bits (264), Expect = 3e-029
 Identities = 48/84 (57%), Positives = 65/84 (77%)
 Frame = -3 / +2

                                                                       
Query: 646 STKLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAI 467
           S KLF+GGL W VD+  L++AFSSFG+VTE R++ D+++GR+RGFGFV +S+ DAAK A 
Sbjct: 137 SNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAK 316

                                   
Query: 466 SAMDGKEIDGRQVRVNMANERPAG 395
            AM GK + GR +R+N A E+P G
Sbjct: 317 DAMGGKALLGRPLRINFALEKPRG 388



>gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 398

 Score =  109 bits (232), Expect = 7e-025
 Identities = 39/82 (47%), Positives = 59/82 (71%)
 Frame = -3 / +2

                                                                       
Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           + F+GGL W  D+  L +AFS +GE+ ++++I DRETGRSRGFGFV +++  +  +AI A
Sbjct: 98  RCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 277

                                 
Query: 460 MDGKEIDGRQVRVNMANERPAG 395
           M+G+++DGR + VN A  R  G
Sbjct: 278 MNGQDLDGRNITVNQAQSRGXG 343



>gb|AF191305.1|AF191305 Medicago sativa glycine-rich RNA binding protein (GRP1) mRNA,
           partial cds
          Length = 318

 Score =  107 bits (229), Expect = 2e-024
 Identities = 38/82 (46%), Positives = 59/82 (71%)
 Frame = -3 / +1

                                                                       
Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           + F+GGL W  D+  L +AFS +GE+ ++++I DRETGRSRGFGFV +++  +  + I A
Sbjct: 22  RCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDVIEA 201

                                 
Query: 460 MDGKEIDGRQVRVNMANERPAG 395
           M+G+++DGR + VN A  R +G
Sbjct: 202 MNGQDLDGRNITVNQAQSRGSG 267



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 7,249,704
Number of Sequences: 7669
Number of extensions: 94059
Number of successful extensions: 1004
Number of sequences better than 1.0e-020: 4
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 262777086
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)