TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1366945.2.1
(1191 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516727.1|CO516727 s13dSG74F0500044_446782 Glandular tr... 80 9e-025
>gb|CO516727.1|CO516727 s13dSG74F0500044_446782 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 561
Score = 79.9 bits (168), Expect(2) = 9e-025
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
++Y SLWNADDWAT+GG K DWSKAPF+AS++GF D C
Sbjct: 217 KIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGC 336
Score = 48.7 bits (100), Expect(2) = 9e-025
Identities = 15/25 (60%), Positives = 22/25 (88%)
Frame = +1 / +1
Query: 232 YRRMRWVQRKFMIYNYCADAKRFPQ 306
++R+RWV++K+ IYNYC D KR+PQ
Sbjct: 424 WQRLRWVRQKYTIYNYCNDRKRYPQ 498
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,307,710
Number of Sequences: 7669
Number of extensions: 95414
Number of successful extensions: 634
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 324336753
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)