TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.1
(634 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511931.1|CO511931 s13dSG05G0200020_103762 Glandular tr... 122 4e-029
gb|CO514409.1|CO514409 s13dSG36C0400024_327478 Glandular tr... 122 4e-029
gb|CO515008.1|CO515008 s13dSG26C0400034_397521 Glandular tr... 122 4e-029
>gb|CO511931.1|CO511931 s13dSG05G0200020_103762 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 464
Score = 122 bits (261), Expect = 4e-029
Identities = 48/55 (87%), Positives = 52/55 (94%)
Frame = +3 / +1
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKSKNHTAHNQS+KAHKNGIKKPKRHR TSTKGMDPKFLRN RY+RK +KK+G
Sbjct: 43 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHDKKNG 207
>gb|CO514409.1|CO514409 s13dSG36C0400024_327478 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 367
Score = 122 bits (261), Expect = 4e-029
Identities = 48/55 (87%), Positives = 52/55 (94%)
Frame = +3 / +1
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKSKNHTAHNQS+KAHKNGIKKPKRHR TSTKGMDPKFLRN RY+RK +KK+G
Sbjct: 43 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHDKKNG 207
>gb|CO515008.1|CO515008 s13dSG26C0400034_397521 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 367
Score = 122 bits (261), Expect = 4e-029
Identities = 48/55 (87%), Positives = 52/55 (94%)
Frame = +3 / +1
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKSKNHTAHNQS+KAHKNGIKKPKRHR TSTKGMDPKFLRN RY+RK +KK+G
Sbjct: 43 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHDKKNG 207
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,380,688
Number of Sequences: 7669
Number of extensions: 45547
Number of successful extensions: 999
Number of sequences better than 1.0e-020: 3
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 155646960
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)