TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.49
(1833 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular tr... 177 5e-045
gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular tr... 174 4e-044
gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular tr... 140 6e-034
gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular tr... 117 5e-027
gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular tr... 103 9e-023
>gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 177 bits (380), Expect = 5e-045
Identities = 77/92 (83%), Positives = 80/92 (86%)
Frame = +3 / +2
Query: 1191 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSRE 1370
VETYKIYIFKVLKQVHPDIG+SSKAM IMNSFINDIF RYNKKPTITSRE
Sbjct: 209 VETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 388
Query: 1371 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSA* 1466
IQT+VRLVLPGELAKHAVSEGTKAVTKFTS+*
Sbjct: 389 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 484
>gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 174 bits (374), Expect = 4e-044
Identities = 77/92 (83%), Positives = 79/92 (85%)
Frame = +3 / +1
Query: 1191 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSRE 1370
VETYKIYIFK LKQVHPDIGISSKAM IMNSFINDIF RYNKKPTITSRE
Sbjct: 247 VETYKIYIFKGLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 426
Query: 1371 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSA* 1466
IQT+VRLVLPGELAKHAVSEGTKAVTKFTS+*
Sbjct: 427 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 522
Score = 117 bits (250), Expect = 5e-027
Identities = 60/89 (67%), Positives = 62/89 (69%)
Frame = -3 / -1
Query: 1456 VNLVTALVPSETACLASSPGRTRRTEVWISREVMVGFXXXXXXXXXXXXXXXXXXLMKEF 1277
VNLVTALVPSETACLASSPGRTRRT V ISREVMVGF LMK F
Sbjct: 512 VNLVTALVPSETACLASSPGRTRRTAV*ISREVMVGFLLYLASLEDS*ASFSKISLMKLF 333
Query: 1276 MIDMALEEMPMSGCTCFSTLKM*IL*VST 1190
MI +AL E+PMSG TC LKM*IL*VST
Sbjct: 332 MIPIALLEIPMSG*TCLRPLKM*IL*VST 246
>gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 140 bits (300), Expect = 6e-034
Identities = 61/74 (82%), Positives = 62/74 (83%)
Frame = +3 / +2
Query: 1191 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSRE 1370
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIF RYNKKPTITSRE
Sbjct: 263 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 442
Query: 1371 IQTSVRLVLPGELA 1412
IQT+VRLVLPGELA
Sbjct: 443 IQTAVRLVLPGELA 484
>gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 363
Score = 117 bits (250), Expect = 5e-027
Identities = 52/65 (80%), Positives = 54/65 (83%)
Frame = +3 / +2
Query: 1272 IMNSFINDIFXXXXXXXXXXXRYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 1451
IMNSFINDIF RYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct: 8 IMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 187
Query: 1452 FTSA* 1466
FTS+*
Sbjct: 188 FTSS* 202
>gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 403
Score = 103 bits (219), Expect = 9e-023
Identities = 44/56 (78%), Positives = 44/56 (78%)
Frame = +3 / +2
Query: 1191 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTI 1358
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIF RYNKKPTI
Sbjct: 236 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTI 403
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,769,676
Number of Sequences: 7669
Number of extensions: 108223
Number of successful extensions: 857
Number of sequences better than 1.0e-020: 5
length of database: 1,248,568
effective HSP length: 44
effective length of database: 911,132
effective search space used: 515700712
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)