TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.226
(818 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular tr... 181 1e-046
gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular tr... 176 4e-045
gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular tr... 140 2e-034
gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular tr... 120 2e-028
gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular tr... 103 4e-023
>gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 181 bits (389), Expect = 1e-046
Identities = 80/95 (84%), Positives = 82/95 (86%)
Frame = -2 / +2
Query: 550 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXARYNKKPTITSRE 371
VETYKIYIFKVLKQVHPDIG+SSKAM IMNSFINDIF ARYNKKPTITSRE
Sbjct: 209 VETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 388
Query: 370 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS*IGC 266
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS* C
Sbjct: 389 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*FCC 493
>gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 176 bits (378), Expect = 4e-045
Identities = 79/93 (84%), Positives = 81/93 (87%)
Frame = -2 / +1
Query: 550 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXARYNKKPTITSRE 371
VETYKIYIFK LKQVHPDIGISSKAM IMNSFINDIF ARYNKKPTITSRE
Sbjct: 247 VETYKIYIFKGLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 426
Query: 370 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS*I 272
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS*+
Sbjct: 427 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*M 525
Score = 73.9 bits (155), Expect(2) = 3e-022
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +3 / -1
Query: 285 VNLVTAFVPSETACLASSPGRTRRTEVWISREVMVG 392
VNLVTA VPSETACLASSPGRTRRT V ISREVMVG
Sbjct: 512 VNLVTALVPSETACLASSPGRTRRTAV*ISREVMVG 405
Score = 45.5 bits (93), Expect(2) = 3e-022
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3 / -1
Query: 462 FMMDMALDEMPMSGCTCLSTLKM*IL*VST 551
FM+ +AL E+PMSG TCL LKM*IL*VST
Sbjct: 335 FMIPIALLEIPMSG*TCLRPLKM*IL*VST 246
>gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 140 bits (300), Expect = 2e-034
Identities = 62/74 (83%), Positives = 63/74 (85%)
Frame = -2 / +2
Query: 550 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXARYNKKPTITSRE 371
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIF ARYNKKPTITSRE
Sbjct: 263 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 442
Query: 370 IQTSVRLVLPGELA 329
IQT+VRLVLPGELA
Sbjct: 443 IQTAVRLVLPGELA 484
>gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 363
Score = 120 bits (257), Expect = 2e-028
Identities = 55/66 (83%), Positives = 56/66 (84%)
Frame = -2 / +2
Query: 469 IMNSFINDIFXXXXXXXXXXARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 290
IMNSFINDIF ARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct: 8 IMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 187
Query: 289 FTSS*I 272
FTSS*I
Sbjct: 188 FTSS*I 205
>gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 403
Score = 103 bits (219), Expect = 4e-023
Identities = 45/56 (80%), Positives = 45/56 (80%)
Frame = -2 / +2
Query: 550 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXARYNKKPTI 383
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIF ARYNKKPTI
Sbjct: 236 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTI 403
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,093,840
Number of Sequences: 7669
Number of extensions: 46427
Number of successful extensions: 1724
Number of sequences better than 1.0e-020: 5
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 213088100
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)