TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11001390.3.1
(588 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ311050.1|MSA311050 Medicago sativa pr10.2 gene for cl... 32 0.057
emb|Z50800.1|MSASET2MR M.sativa mRNA for ASET2 29 0.53
gb|CO513342.1|CO513342 s13dSG37H0500044_129848 Glandular tr... 29 0.73
gb|CO511739.1|CO511739 s13dSG01E0700055_103378 Glandular tr... 28 1.00
gb|CO516702.1|CO516702 s13dSG74C1200098_446732 Glandular tr... 23 1.2
gb|CO512251.1|CO512251 s13dSG03G0700052_114016 Glandular tr... 28 1.4
gb|CO516847.1|CO516847 s13dSG98E0200007_447022 Glandular tr... 28 1.4
gb|CO512271.1|CO512271 s13dSG68A0500033_114056 Glandular tr... 27 2.6
gb|CO513016.1|CO513016 s13dSG09F0400031_121958 Glandular tr... 27 2.6
gb|CO514454.1|CO514454 s13dSG36H0700062_327568 Glandular tr... 27 2.6
gb|CO515050.1|CO515050 s13dSG26H0700064_397605 Glandular tr... 27 2.6
gb|CO515269.1|CO515269 s13dSG96H0600060_399403 Glandular tr... 27 2.6
gb|CO516723.1|CO516723 s13dSG74E1100085_446774 Glandular tr... 27 2.6
gb|CO514711.1|CO514711 s13dSG55C0100006_328082 Glandular tr... 26 3.6
gb|AF322116.2|AF322116 Medicago sativa sucrose-phosphate sy... 26 3.6
gb|AY468362.2| Medicago sativa sucrose-phosphate synthase g... 26 3.6
emb|X03931.1|MSGLNAG Medicago sativa L. glutamine synthetas... 26 3.6
gb|AY196987.1| Medicago sativa retrotransposon MIRE1, compl... 25 3.9
gb|CO511972.1|CO511972 s13dSG07C0700054_103844 Glandular tr... 26 4.9
gb|CO512824.1|CO512824 s13dSG20B0800061_121574 Glandular tr... 26 4.9
gb|CO513383.1|CO513383 s13dSG38D0900074_129930 Glandular tr... 26 4.9
gb|CO515440.1|CO515440 s13dSG50G0600052_417939 Glandular tr... 26 4.9
emb|X59441.1|MSEIF4DMR M.sativa mRNA for eIF-4D 26 4.9
emb|AJ968863.1| Medicago sativa partial pect gene for putat... 26 4.9
emb|AJ968868.1| Medicago sativa partial pect gene for putat... 26 4.9
emb|AJ968878.1| Medicago sativa subsp. caerulea partial pec... 26 4.9
emb|AJ968886.1| Medicago sativa subsp. falcata partial pect... 26 4.9
emb|AJ968889.1| Medicago sativa subsp. x gaetula partial pe... 26 4.9
gb|CO514225.1|CO514225 s13dSG76A0400021_157112 Glandular tr... 26 4.9
gb|AW698450.1|AW698450 g400 glandular-haired subtracted cDN... 25 6.7
gb|CO512512.1|CO512512 s13dSG100H110009_114538 Glandular tr... 25 6.7
gb|CO514652.1|CO514652 s13dSG46D0700062_327964 Glandular tr... 25 6.7
gb|CO514682.1|CO514682 s13dSG46G1100088_328024 Glandular tr... 25 6.7
gb|CO514722.1|CO514722 s13dSG55C1200098_328104 Glandular tr... 25 6.7
gb|CO514756.1|CO514756 s13dSG55G0900072_328172 Glandular tr... 25 6.7
gb|CO514967.1|CO514967 s13dSG63F0500047_397439 Glandular tr... 25 6.7
gb|AY366351.1| Medicago sativa high-affinity phosphate tran... 25 6.7
emb|CQ990394.2| Sequence 72 from Patent WO2004113528 25 6.7
gb|CO512300.1|CO512300 s13dSG68D0100010_114114 Glandular tr... 25 9.2
gb|CO513444.1|CO513444 s13dSG10C0600038_130052 Glandular tr... 25 9.2
gb|CO513721.1|CO513721 s13dSG15C1200086_140224 Glandular tr... 25 9.2
gb|CO514155.1|CO514155 s13dSG75H0900076_156972 Glandular tr... 25 9.2
gb|CO514693.1|CO514693 s13dSG46H1100096_328046 Glandular tr... 25 9.2
gb|CO514704.1|CO514704 s13dSG55B0400041_328068 Glandular tr... 25 9.2
gb|CO514763.1|CO514763 s13dSG55H0700064_328186 Glandular tr... 25 9.2
gb|CO514844.1|CO514844 s13dSG56A0300021_328348 Glandular tr... 25 9.2
gb|CO516209.1|CO516209 s13dSG67G0300020_445746 Glandular tr... 25 9.2
gb|CO516996.1|CO516996 s13dSG81F0800073_468538 Glandular tr... 25 9.2
gb|AF383622.1|AF383622 Medicago sativa early light inducibl... 25 9.2
gb|AF439379.1| Medicago sativa LTR retroelement MCIRE hypot... 25 9.2
gb|AY651774.1| Medicago sativa sucrose-phosphatase mRNA, pa... 25 9.2
emb|Y08678.1|MSGB1 Medicago sativa mRNA for G protein beta ... 25 9.2
>emb|AJ311050.1|MSA311050 Medicago sativa pr10.2 gene for class 10 PR protein
Length = 2307
Score = 32.2 bits (64), Expect = 0.057
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3 / +3
Query: 360 IHSFAQLFLPTLMNINMLQSG 422
+HSF Q+ +PT N+N+L +G
Sbjct: 1551 LHSFRQILVPTFKNLNILSNG 1613
>emb|Z50800.1|MSASET2MR M.sativa mRNA for ASET2
Length = 1193
Score = 29.0 bits (57), Expect = 0.53
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2 / +3
Query: 263 VDGSPHYVKLGPMQEAHVYSSENVH 337
+ GSPH K P Q +H Y N H
Sbjct: 378 IGGSPHEQKFTPTQVSHFYYYINTH 452
>gb|CO513342.1|CO513342 s13dSG37H0500044_129848 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 28.6 bits (56), Expect = 0.73
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / +2
Query: 44 CCCSFLSTWGSLQN 85
CCC+F S W SL N
Sbjct: 167 CCCTFHSQWSSLCN 208
>gb|CO511739.1|CO511739 s13dSG01E0700055_103378 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 506
Score = 28.1 bits (55), Expect = 1.00
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -3 / -1
Query: 481 FTVW*YAHRPWW*T 440
+++W + HRPWW T
Sbjct: 245 WSLWWWGHRPWWNT 204
>gb|CO516702.1|CO516702 s13dSG74C1200098_446732 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 529
Score = 22.6 bits (43), Expect(2) = 1.2
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -2 / -1
Query: 386 QEKLSKTVNFLKCFHLCGHFHWNTHV 309
Q+ + K L+CF+ HF+ N+ +
Sbjct: 88 QD*VFKKAQKLRCFNPLNHFYINSSI 11
Score = 22.1 bits (42), Expect(2) = 1.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -3 / -2
Query: 541 RFDIEXRCLCTNPGCI 494
R +E RC+ +P C+
Sbjct: 198 RCGVELRCVAFSPNCV 151
>gb|CO512251.1|CO512251 s13dSG03G0700052_114016 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 590
Score = 27.6 bits (54), Expect = 1.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2 / -1
Query: 26 CSRQCFCCCSFLS 64
C RQ CCCSF +
Sbjct: 488 CHRQSVCCCSFFN 450
>gb|CO516847.1|CO516847 s13dSG98E0200007_447022 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 379
Score = 27.6 bits (54), Expect = 1.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 39 AFAVARFYQRGEAYKIITC 95
AF +RF++RG +YK+ C
Sbjct: 28 AFWKSRFFRRGSSYKLALC 84
>gb|CO512271.1|CO512271 s13dSG68A0500033_114056 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 533
Score = 26.7 bits (52), Expect = 2.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3 / -3
Query: 148 SYLKWTTSCPLKIGSTK 98
S++KW +C LK+G K
Sbjct: 189 SFIKWNWTCSLKLGFVK 139
>gb|CO513016.1|CO513016 s13dSG09F0400031_121958 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 525
Score = 26.7 bits (52), Expect = 2.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3 / +2
Query: 381 FLPTLMNINMLQSGFLENLIVYHHGL*AYYQTVKLWLLIQPGLVHKH 521
FL L+ + +L+ + + + HH L Q LW L++ L+ +H
Sbjct: 56 FLLLLLQVMLLRDHYHHHHVFPHHHLLILLQHHHLW*LLRHHLLPRH 196
>gb|CO514454.1|CO514454 s13dSG36H0700062_327568 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 620
Score = 26.7 bits (52), Expect = 2.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2 / +1
Query: 128 QLSAQNWFHQNTCNNFVSFPTLIKTSNSKSTVLSRPMW 15
QL QN FH + + PTL S ++TV R W
Sbjct: 88 QL*TQNTFHTCLRSALIQSPTLRPCST*ETTVAHR*FW 201
>gb|CO515050.1|CO515050 s13dSG26H0700064_397605 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 457
Score = 26.7 bits (52), Expect = 2.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2 / +1
Query: 128 QLSAQNWFHQNTCNNFVSFPTLIKTSNSKSTVLSRPMW 15
QL QN FH + + PTL S ++TV R W
Sbjct: 88 QL*TQNTFHTCLRSALIQSPTLRPCST*ETTVAHR*FW 201
>gb|CO515269.1|CO515269 s13dSG96H0600060_399403 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 476
Score = 26.7 bits (52), Expect = 2.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1 / +2
Query: 225 CRSFKCPHLGCLKIP 181
C+S CPH+G L P
Sbjct: 431 CKSVSCPHVGSLGCP 475
>gb|CO516723.1|CO516723 s13dSG74E1100085_446774 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 528
Score = 26.7 bits (52), Expect = 2.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2 / +2
Query: 128 QLSAQNWFHQNTCNNFVSFPTLIKTSNSKSTVLSRPMW 15
QL QN FH + + PTL S ++TV R W
Sbjct: 158 QL*TQNTFHTCLRSALIQSPTLRPCST*ETTVAHR*FW 271
>gb|CO514711.1|CO514711 s13dSG55C0100006_328082 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 449
Score = 26.3 bits (51), Expect = 3.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1 / -2
Query: 280 LCKIRAHAGGTCVFQ*KC 333
LC+ + H GGTC * C
Sbjct: 166 LCRCQNHFGGTCTVW*TC 113
>gb|AF322116.2|AF322116 Medicago sativa sucrose-phosphate synthase mRNA, complete cds
Length = 3579
Score = 26.3 bits (51), Expect = 3.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2 / -3
Query: 392 CWQEKLSKTVNFLKCFH 342
C KLSK F KCFH
Sbjct: 1672 CKVSKLSKRTAFSKCFH 1622
>gb|AY468362.2| Medicago sativa sucrose-phosphate synthase gene, promoter region and
complete cds
Length = 8933
Score = 26.3 bits (51), Expect = 3.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2 / -1
Query: 443 LPPWSVSILPDCETVAFNTARVGT 514
+P SVSI P C T+ +N+ GT
Sbjct: 4916 IPSGSVSISPSCGTI*WNSIPGGT 4845
>emb|X03931.1|MSGLNAG Medicago sativa L. glutamine synthetase gene
Length = 4464
Score = 26.3 bits (51), Expect = 3.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1 / +1
Query: 61 INVGKLTKLLHVFWWNQF*ADSWWSTSD 144
+ + L+ H WNQ+*+D+W S D
Sbjct: 3034 LTLQSLSLCRHQHQWNQW*SDAWSSKLD 3117
>gb|AY196987.1| Medicago sativa retrotransposon MIRE1, complete sequence
Length = 13561
Score = 24.9 bits (48), Expect(2) = 3.9
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -2 / -3
Query: 485 QFHSLVVCSQTMVVDYKIFQKSRLKHIYVH 396
Q C+Q ++VDY + Q++ L + +H
Sbjct: 6332 QLEQTFQCNQCLLVDYTLVQQA*LCFLLLH 6243
Score = 23.5 bits (45), Expect(2) = 3.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2 / -2
Query: 122 SAQNWFHQNTCNNFVSF 72
S + WFHQ N F SF
Sbjct: 4290 SLRFWFHQTLRNRF*SF 4240
>gb|CO511972.1|CO511972 s13dSG07C0700054_103844 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 469
Score = 25.8 bits (50), Expect = 4.9
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +2 / -3
Query: 80 QNYYMYFGGTNFER 121
Q+YY ++GG N+E+
Sbjct: 62 QSYYTHYGGYNYEK 21
>gb|CO512824.1|CO512824 s13dSG20B0800061_121574 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 596
Score = 25.8 bits (50), Expect = 4.9
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -2 / -1
Query: 329 FHWNTHVPPAWALILHNEVNHL 264
+ W H PP W LH N L
Sbjct: 572 WQWYWHPPPPWLNRLHRGCNRL 507
>gb|CO513383.1|CO513383 s13dSG38D0900074_129930 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 487
Score = 25.8 bits (50), Expect = 4.9
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2 / +3
Query: 515 VYQPWLY*KPQFHSLVVCSQTMVVDYKIFQKSRLKHI 405
++Q WL+ K S++ CS +V ++ +R + I
Sbjct: 375 IHQLWLHLKYNLVSIITCSAILVFGSTVYIMTRPRSI 485
>gb|CO515440.1|CO515440 s13dSG50G0600052_417939 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 424
Score = 25.8 bits (50), Expect = 4.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3 / -3
Query: 505 PGCIKSHSFTVW 470
P CI+SHS VW
Sbjct: 353 PNCIQSHSHIVW 318
>emb|X59441.1|MSEIF4DMR M.sativa mRNA for eIF-4D
Length = 741
Score = 25.8 bits (50), Expect = 4.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1 / -2
Query: 432 FPKIQTEAYLCSSMLARKAEQNCEFPEMLP 343
FP I +A +CSS +A + FP P
Sbjct: 596 FPPISFKAQICSSPIADITDTTRSFPSANP 507
>emb|AJ968863.1| Medicago sativa partial pect gene for putative pectate lyase,
population variant Es142
Length = 565
Score = 25.8 bits (50), Expect = 4.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2 / +3
Query: 137 LQITSYDYDAPIDEYGIL 190
L I + ++D PID YG+L
Sbjct: 162 LNILNLNFDRPIDVYGLL 215
>emb|AJ968868.1| Medicago sativa partial pect gene for putative pectate lyase,
specimen voucher USDA PI464788
Length = 565
Score = 25.8 bits (50), Expect = 4.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2 / +3
Query: 137 LQITSYDYDAPIDEYGIL 190
L I + ++D PID YG+L
Sbjct: 162 LNILNLNFDRPIDVYGLL 215
>emb|AJ968878.1| Medicago sativa subsp. caerulea partial pect gene for putative
pectate lyase, specimen voucher USDA PI464718
Length = 565
Score = 25.8 bits (50), Expect = 4.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2 / +3
Query: 137 LQITSYDYDAPIDEYGIL 190
L I + ++D PID YG+L
Sbjct: 162 LNILNLNFDRPIDVYGLL 215
>emb|AJ968886.1| Medicago sativa subsp. falcata partial pect gene for putative
pectate lyase, specimen voucher USDA W613084
Length = 565
Score = 25.8 bits (50), Expect = 4.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2 / +3
Query: 137 LQITSYDYDAPIDEYGIL 190
L I + ++D PID YG+L
Sbjct: 162 LNILNLNFDRPIDVYGLL 215
>emb|AJ968889.1| Medicago sativa subsp. x gaetula partial pect gene for putative
pectate lyase
Length = 563
Score = 25.8 bits (50), Expect = 4.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2 / +3
Query: 137 LQITSYDYDAPIDEYGIL 190
L I + ++D PID YG+L
Sbjct: 162 LNILNLNFDRPIDVYGLL 215
>gb|CO514225.1|CO514225 s13dSG76A0400021_157112 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 228
Score = 25.8 bits (50), Expect = 4.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1 / -2
Query: 432 FPKIQTEAYLCSSMLARKAEQNCEFPEMLP 343
FP I +A +CSS +A + FP P
Sbjct: 95 FPPISFKAQICSSPIADITDTTRSFPSANP 6
>gb|AW698450.1|AW698450 g400 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 399
Score = 25.4 bits (49), Expect = 6.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1 / -3
Query: 187 LKTT*VGAFERPTCSY*TL*ISSYCSRWFTSLC 285
L+ * FE P CSY + +SS + +SLC
Sbjct: 184 LQLQ*QSLFEWPVCSYFKIYVSSQNPKLPSSLC 86
>gb|CO512512.1|CO512512 s13dSG100H110009_114538 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 595
Score = 25.4 bits (49), Expect = 6.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3 / +1
Query: 381 FLPTLMNINMLQSGFLENLIVYHHGL*AYYQTVKLWLLIQPGLVHKH 521
FL L+ + +L+ + + + HH L Q LW L++ L+ H
Sbjct: 118 FLLLLLQVMLLRDHYHHHHVFPHHHLLILLQHHHLW*LLRHHLLPHH 258
>gb|CO514652.1|CO514652 s13dSG46D0700062_327964 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 589
Score = 25.4 bits (49), Expect = 6.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3 / +1
Query: 381 FLPTLMNINMLQSGFLENLIVYHHGL*AYYQTVKLWLLIQPGLVHKH 521
FL L+ + +L+ + + + HH L Q LW L++ L+ H
Sbjct: 139 FLLLLLQVMLLRDHYHHHHVFPHHHLLILLQHHHLW*LLRHHLLPHH 279
>gb|CO514682.1|CO514682 s13dSG46G1100088_328024 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 362
Score = 25.4 bits (49), Expect = 6.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2 / +3
Query: 116 QNWFHQNTCNNFVSFPTLIKTS 51
Q+W TC +F+ P L TS
Sbjct: 60 QSWITMMTCGSFILLPHLSLTS 125
>gb|CO514722.1|CO514722 s13dSG55C1200098_328104 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 530
Score = 25.4 bits (49), Expect = 6.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3 / +3
Query: 381 FLPTLMNINMLQSGFLENLIVYHHGL*AYYQTVKLWLLIQPGLVHKH 521
FL L+ + +L+ + + + HH L Q LW L++ L+ H
Sbjct: 114 FLLLLLQVMLLRDHYHHHHVFPHHHLLILLQHHHLW*LLRHHLLPHH 254
>gb|CO514756.1|CO514756 s13dSG55G0900072_328172 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 510
Score = 25.4 bits (49), Expect = 6.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3 / +1
Query: 381 FLPTLMNINMLQSGFLENLIVYHHGL*AYYQTVKLWLLIQPGLVHKH 521
FL L+ + +L+ + + + HH L Q LW L++ L+ H
Sbjct: 139 FLLLLLQVMLLRDHYHHHHVFPHHHLLILLQHHHLW*LLRHHLLPHH 279
>gb|CO514967.1|CO514967 s13dSG63F0500047_397439 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 421
Score = 25.4 bits (49), Expect = 6.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3 / +1
Query: 381 FLPTLMNINMLQSGFLENLIVYHHGL*AYYQTVKLWLLIQPGLVHKH 521
FL L+ + +L+ + + + HH L Q LW L++ L+ H
Sbjct: 118 FLLLLLQVMLLRDHYHHHHVFPHHHLLILLQHHHLW*LLRHHLLPHH 258
>gb|AY366351.1| Medicago sativa high-affinity phosphate transporter (PT1) gene,
partial cds
Length = 1087
Score = 25.4 bits (49), Expect = 6.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -3 / -1
Query: 310 CLLHGP*FYIMR*TIYCSKS*FTKFNSC 227
CL++ P* +++ I+C+ S T ++C
Sbjct: 352 CLVNKP*LFLLSLVIFCTFSSSTSSSTC 269
>emb|CQ990394.2| Sequence 72 from Patent WO2004113528
Length = 1862
Score = 25.4 bits (49), Expect = 6.7
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = -1 / -2
Query: 432 FPKIQTEAYLCSSMLARKAEQNCEFPEMLPFVWTFS 325
F Q E Y C +M ++ FP +WT S
Sbjct: 1366 FSNQQRECYRCITMYLNSFSRSSYFPP*NSLIWTSS 1259
>gb|CO512300.1|CO512300 s13dSG68D0100010_114114 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 571
Score = 24.9 bits (48), Expect = 9.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3 / -3
Query: 535 DIEXRCLCTNPGC 497
DIE CLC + GC
Sbjct: 104 DIESSCLCCSYGC 66
>gb|CO513444.1|CO513444 s13dSG10C0600038_130052 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 507
Score = 24.9 bits (48), Expect = 9.2
Identities = 6/13 (46%), Positives = 7/13 (53%)
Frame = +2 / +2
Query: 38 CFCCCSFLSTWGS 76
C CCC WG+
Sbjct: 11 CCCCCCLFCWWGA 49
>gb|CO513721.1|CO513721 s13dSG15C1200086_140224 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 508
Score = 24.9 bits (48), Expect = 9.2
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2 / -1
Query: 44 CCCSFLSTWGSLQN 85
CCC LS W S N
Sbjct: 493 CCCCCLSRWHSRSN 452
>gb|CO514155.1|CO514155 s13dSG75H0900076_156972 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 515
Score = 24.9 bits (48), Expect = 9.2
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2 / -3
Query: 44 CCCSFLSTWGSLQN 85
CCC LS W S N
Sbjct: 219 CCCCCLSRWHSRSN 178
>gb|CO514693.1|CO514693 s13dSG46H1100096_328046 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 24.9 bits (48), Expect = 9.2
Identities = 5/16 (31%), Positives = 9/16 (56%)
Frame = +1 / -2
Query: 499 SQGWYTNIXFQCRIWV 546
+ GW N+ C +W+
Sbjct: 98 TSGWICNVELHCEMWI 51
>gb|CO514704.1|CO514704 s13dSG55B0400041_328068 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 24.9 bits (48), Expect = 9.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +2 / +2
Query: 23 ACSRQCFCCCSFLSTWGSLQNYYMYFGGTNFE 118
+CS+ C CS + W Q Y + G + E
Sbjct: 437 SCSKMENCVCSS*TVWWFCQRYRCW*GSCSVE 532
>gb|CO514763.1|CO514763 s13dSG55H0700064_328186 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 520
Score = 24.9 bits (48), Expect = 9.2
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2 / -2
Query: 44 CCCSFLSTWGSLQN 85
CCC LS W S N
Sbjct: 375 CCCCCLSRWHSRSN 334
>gb|CO514844.1|CO514844 s13dSG56A0300021_328348 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 638
Score = 24.9 bits (48), Expect = 9.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1 / -3
Query: 408 YLCSSMLARKAEQNCEFPEMLPFVW 334
+LC L R +N + P++ FVW
Sbjct: 285 FLCIQCLKRDQFRNLQQPQLRLFVW 211
>gb|CO516209.1|CO516209 s13dSG67G0300020_445746 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 459
Score = 24.9 bits (48), Expect = 9.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2 / -1
Query: 347 FHLCGHFHWNTHVP 306
FH C HFH H+P
Sbjct: 333 FHHCHHFHPILHLP 292
>gb|CO516996.1|CO516996 s13dSG81F0800073_468538 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 487
Score = 24.9 bits (48), Expect = 9.2
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2 / -1
Query: 44 CCCSFLSTWGSLQN 85
CCC LS W S N
Sbjct: 205 CCCCCLSRWHSRSN 164
>gb|AF383622.1|AF383622 Medicago sativa early light inducible protein mRNA, complete cds
Length = 773
Score = 24.9 bits (48), Expect = 9.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2 / +3
Query: 191 LRYHIRQLVHHNHS 150
L +H QL HHNH+
Sbjct: 267 LHHHQHQLHHHNHN 308
>gb|AF439379.1| Medicago sativa LTR retroelement MCIRE hypothetical protein mRNA,
complete cds
Length = 4717
Score = 24.9 bits (48), Expect = 9.2
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +2 / +3
Query: 38 CFCCCSFLSTWGSLQNYYMY 97
CFCC TW + Y Y
Sbjct: 2427 CFCCLFHFGTWTHILFY*YY 2486
>gb|AY651774.1| Medicago sativa sucrose-phosphatase mRNA, partial cds
Length = 1131
Score = 24.9 bits (48), Expect = 9.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3 / -1
Query: 495 IQPGLVHKHRFSMSNL 542
+ P ++ HRFS+SNL
Sbjct: 219 LNPPIIGNHRFSISNL 172
>emb|Y08678.1|MSGB1 Medicago sativa mRNA for G protein beta subunit-like protein (gbl
gene)
Length = 1259
Score = 24.9 bits (48), Expect = 9.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2 / +2
Query: 50 CSFLSTWGSLQNYYMYFG 103
CSF+S + + Y +YFG
Sbjct: 1151 CSFVSFFPQVNKYNLYFG 1204
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,133,971
Number of Sequences: 7669
Number of extensions: 98353
Number of successful extensions: 1806
Number of sequences better than 10.0: 58
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 143857406
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)