TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS9f07.yg.2.1
(394 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM443222.2|BM443222 EBro02_SQ003_D03_R root, 3 week, hyd... 259 7e-069
gb|CA016096.1|CA016096 HV10C18u HV Hordeum vulgare subsp. v... 241 2e-063
gb|CA016336.1|CA016336 HV09G16u HV Hordeum vulgare subsp. v... 227 2e-059
gb|CA005005.1|CA005005 HU12K09u HU Hordeum vulgare subsp. v... 192 1e-056
gb|BM099511.2|BM099511 EBes01_SQ003_H09_R embryo sac, 4-6 D... 208 1e-053
gb|AL500587.1|AL500587 AL500587 Hordeum vulgare Barke roots... 158 4e-041
gb|CA008944.1|CA008944 HU12K09r HU Hordeum vulgare subsp. v... 41 0.003
gb|BE421033.1|BE421033 HWM005.B02 ITEC HWM Barley Leaf Libr... 33 0.74
gb|AJ433753.1|AJ433753 AJ433753 S00002 Hordeum vulgare subs... 33 0.74
gb|BQ663786.1|BQ663786 HU04A23u HU Hordeum vulgare subsp. v... 33 0.74
gb|BI951776.1|BI951776 HVSMEm0002L16f Hordeum vulgare green... 32 1.4
gb|BU996395.1|BU996395 HM13H12r HM Hordeum vulgare subsp. v... 32 1.4
gb|BU996596.1|BU996596 HM14C03r HM Hordeum vulgare subsp. v... 32 1.4
gb|BJ454377.1|BJ454377 BJ454377 K. Sato unpublished cDNA li... 29 1.5
gb|CA024519.1|CA024519 HZ49I12r HZ Hordeum vulgare subsp. v... 32 1.9
gb|CA027905.1|CA027905 HZ60G13r HZ Hordeum vulgare subsp. v... 32 1.9
gb|AV910002.1|AV910002 AV910002 K. Sato unpublished cDNA li... 29 2.3
gb|BU969235.1|BU969235 HB10P04r BC Hordeum vulgare subsp. v... 29 2.4
gb|AL500026.1|AL500026 AL500026 Hordeum vulgare Barke etiol... 28 4.5
emb|Y15802.1|HVSUCSYN2 Hordeum vulgare Ss2 gene 30 4.9
gb|BF261877.2|BF261877 HV_CEa0002H13f Hordeum vulgare seedl... 30 6.8
gb|BQ458542.1|BQ458542 HA04O18r HA Hordeum vulgare subsp. v... 30 6.8
gb|BQ764506.1|BQ764506 EBca01_SQ004_G02_R carpel, pre-anthe... 29 9.3
gb|BU988359.1|BU988359 HF17G15r HF Hordeum vulgare subsp. v... 29 9.3
>gb|BM443222.2|BM443222 EBro02_SQ003_D03_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_D03 5', mRNA sequence
Length = 383
Score = 259 bits (559), Expect = 7e-069
Identities = 102/123 (82%), Positives = 114/123 (92%)
Frame = -1 / +3
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIH KEE+TPKF NR CSCSSK+GTVYHLF
Sbjct: 12 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHEKEEKTPKFMNRSCSCSSKRGTVYHLF 191
Query: 214 IRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRI 35
+RERGRFK+E+IY+RS QLTLGAL+SAV KF SL HVP+WKDERP SIRGGD+LK+Y+I
Sbjct: 192 VRERGRFKTENIYLRSDQLTLGALKSAVHDKFSSLKHVPIWKDERPSSIRGGDELKVYKI 371
Query: 34 YPV 26
YP+
Sbjct: 372 YPI 380
Score = 182 bits (391), Expect = 1e-045
Identities = 82/122 (67%), Positives = 88/122 (72%)
Frame = +2 / -1
Query: 29 WVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQC*LARSHINAL*LKPPSL 208
W+N V Q IPTSNT WPFILPYRN++EG KF H R Q S *L S IN L LKPPSL
Sbjct: 377 WINFVHLQFIPTSNT*WPFILPYRNMLEGAKFIVHSRLQSS*S*LI*S*INVLCLKPPSL 198
Query: 209 SDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCHVDKSFERIRWTI 388
SDK VV C FAG TR+I KFWS F MNL S+MYTK T *MNRCHV+K ERIRWTI
Sbjct: 197 SDK*VVYCSSFAGATTRAIHKFWSFFFFFMNLRSDMYTKATG*MNRCHVNKCLERIRWTI 18
Query: 389 IL 394
IL
Sbjct: 17 IL 12
Score = 177 bits (382), Expect = 2e-044
Identities = 84/121 (69%), Positives = 87/121 (71%)
Frame = +3 / -2
Query: 30 G*ILYSFRXXXXXXXXXXXXFHTGTWLRDLNLPSTADSKAPSVNWPDLI*MLSDLNRPLS 209
G*ILY+F FH GT LR+LNL TAD KAP VN DL *M S LNRPLS
Sbjct: 376 G*ILYTFNSSPPRILDGLSSFHIGTCLRELNLSCTADFKAPKVN*SDLR*MFSVLNRPLS 197
Query: 210 RINKW*TVPFLLEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPS 389
NKW TVP LLEQL RF+NFGV SSF *I VAICIQRRQDE*TAAMSI ALKESDGPS
Sbjct: 196 LTNKWYTVPLLLEQLHERFINFGVFSSFS*IFVAICIQRRQDE*TAAMSISALKESDGPS 17
Query: 390 Y 392
Y
Sbjct: 16 Y 14
Score = 169 bits (363), Expect = 8e-042
Identities = 79/122 (64%), Positives = 91/122 (74%)
Frame = -2 / +1
Query: 393 SMMVHLILSKLLSTWQRFIHLVVFVYILLPRFI*RRKGLQNLQIDLVAVPAKRGQFTTCL 214
SMMVHLILS+ L TWQRFIH V FVYI L RF+ ++K LQNL I V PAK Q+TT L
Sbjct: 13 SMMVHLILSRHLLTWQRFIHPVAFVYISLRRFMKKKKKLQNL*IARVVAPAKEEQYTTYL 192
Query: 213 SEREGGLSQRAFI*DRAS*HWEPWNLQCSVNLGPSTTFLYGRMKGHRVLEVGMT*NYTEF 34
SEREGGL QR FI*D+ S* E +L C++NL PS+ FLYGRMKGH+V EVGM * T+F
Sbjct: 193 SEREGGLRQRTFI*DQIS*L*EL*SLLCTINLAPSSMFLYGRMKGHQVFEVGMN*RCTKF 372
Query: 33 TQ 28
Q
Sbjct: 373 IQ 378
Score = 164 bits (352), Expect = 3e-040
Identities = 79/120 (65%), Positives = 92/120 (76%)
Frame = -3 / +2
Query: 392 V*WSI*FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVY 213
V*WSI*FFQ +Y HGSGSFILS LYTY Y+DS K K+SKIY+S +*L QQK +S+PL+
Sbjct: 14 V*WSI*FFQGTY*HGSGSFILSPLYTYRYEDS*KRRKNSKIYESLV*LLQQKRNSIPLIC 193
Query: 212 PRERAV*VREHLYEIGPVNTGSLGICSAR*I*VPQPRSCMEG*KATEY*RWG*PETIQNL 33
RERAV* REHL +I VN S +C AR*I*+PQ S MEG*KA +Y RWG* E +QNL
Sbjct: 194 QRERAV*DREHLSKIRSVNFRSFEVCCAR*I*LPQACSYMEG*KAIKYSRWG*IEGVQNL 373
Score = 83.5 bits (176), Expect(2) = 2e-029
Identities = 35/52 (67%), Positives = 41/52 (78%)
Frame = +1 / -3
Query: 238 FCWNSYKVDL*ILESFPPLNESW*QYVYKDDKMNEPLPCR*EL*KNQMDHHT 393
FCW++Y D *ILE F +ES *+YVYK D+MNEPLPC+* *KNQMDHHT
Sbjct: 168 FCWSNYTSDS*ILEFFLLFHESS*RYVYKGDRMNEPLPCQ*VP*KNQMDHHT 13
Score = 63.4 bits (132), Expect(2) = 2e-029
Identities = 31/52 (59%), Positives = 34/52 (65%)
Frame = +1 / -3
Query: 28 LGKFCIVSGHPHL*YSVAFHPSIQERG*GT*IYRALQIPRLPVLTGPISYKC 183
L KFC S HPHL Y +AFHPSI E *G+*IYRA Q +L LT I KC
Sbjct: 378 LDKFCTPSIHPHLEYLMAFHPSI*EHA*GS*IYRAQQTSKLLKLTDLILDKC 223
>gb|CA016096.1|CA016096 HV10C18u HV Hordeum vulgare subsp. vulgare cDNA clone HV10C18
3-PRIME, mRNA sequence
Length = 556
Score = 241 bits (520), Expect = 2e-063
Identities = 95/117 (81%), Positives = 108/117 (92%)
Frame = -1 / -1
Query: 352 MAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLFIRERGRFKSESIYM 173
MAAVHSSCRLCIHIATKIH KEE+TPKF NR CSCSSK+GTVYHLF+RERGRFK+E+IY+
Sbjct: 556 MAAVHSSCRLCIHIATKIHEKEEKTPKFMNRSCSCSSKRGTVYHLFVRERGRFKTENIYL 377
Query: 172 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQAL 2
RS QLTLGAL+SAV KF SL HVP+WKDERP SIRGGD+LK+Y+IYP+GLT+RQAL
Sbjct: 376 RSDQLTLGALKSAVHDKFSSLKHVPIWKDERPSSIRGGDELKVYKIYPIGLTERQAL 206
Score = 161 bits (347), Expect = 1e-039
Identities = 74/115 (64%), Positives = 80/115 (69%)
Frame = +2 / +2
Query: 8 LTLC*TDWVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQC*LARSHINAL 187
L+ C T W+N V Q IPTSNT WPFILPYRN++EG KF H R Q S *L S IN L
Sbjct: 212 LSFCKTYWINFVHLQFIPTSNT*WPFILPYRNMLEGAKFIVHSRLQSS*S*LI*S*INVL 391
Query: 188 *LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCH 352
LKPPSLSDK VV C FAG TR+I KFWS F MNL S+MYTK T *MNRCH
Sbjct: 392 CLKPPSLSDK*VVYCSSFAGATTRAIHKFWSFFFFFMNLRSDMYTKATG*MNRCH 556
Score = 157 bits (337), Expect = 3e-038
Identities = 75/113 (66%), Positives = 78/113 (69%)
Frame = +3 / +3
Query: 12 RCVRPTG*ILYSFRXXXXXXXXXXXXFHTGTWLRDLNLPSTADSKAPSVNWPDLI*MLSD 191
R VRP G*ILY+F FH GT LR+LNL TAD KAP VN DL *M S
Sbjct: 216 RSVRPIG*ILYTFNSSPPRILDGLSSFHIGTCLRELNLSCTADFKAPKVN*SDLR*MFSV 395
Query: 192 LNRPLSRINKW*TVPFLLEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAA 350
LNRPLS NKW TVP LLEQL RF+NFGV SSF *I VAICIQRRQDE*TAA
Sbjct: 396 LNRPLSLTNKWYTVPLLLEQLHERFINFGVFSSFS*IFVAICIQRRQDE*TAA 554
Score = 148 bits (317), Expect = 2e-035
Identities = 70/113 (61%), Positives = 81/113 (71%)
Frame = -2 / -2
Query: 351 WQRFIHLVVFVYILLPRFI*RRKGLQNLQIDLVAVPAKRGQFTTCLSEREGGLSQRAFI* 172
WQRFIH V FVYI L RF+ ++K LQNL I V PAK Q+TT LSEREGGL QR FI*
Sbjct: 555 WQRFIHPVAFVYISLRRFMKKKKKLQNL*IARVVAPAKEEQYTTYLSEREGGLRQRTFI* 376
Query: 171 DRAS*HWEPWNLQCSVNLGPSTTFLYGRMKGHRVLEVGMT*NYTEFTQSV*HN 13
D+ S* E +L C++NL PS+ FLYGRMKGH+V EVGM * T+F Q V N
Sbjct: 375 DQIS*L*EL*SLLCTINLAPSSMFLYGRMKGHQVFEVGMN*RCTKFIQ*VLQN 217
Score = 144 bits (310), Expect = 2e-034
Identities = 71/114 (62%), Positives = 85/114 (74%)
Frame = -3 / -3
Query: 350 GSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVYPRERAV*VREHLYE 171
GSGSFILS LYTY Y+DS K K+SKIY+S +*L QQK +S+PL+ RERAV* REHL +
Sbjct: 554 GSGSFILSPLYTYRYEDS*KRRKNSKIYESLV*LLQQKRNSIPLICQRERAV*DREHLSK 375
Query: 170 IGPVNTGSLGICSAR*I*VPQPRSCMEG*KATEY*RWG*PETIQNLPSRSNTTS 9
I VN S +C AR*I*+PQ S MEG*KA +Y RWG* E +QNL +RS T+
Sbjct: 374 IRSVNFRSFEVCCAR*I*LPQACSYMEG*KAIKYSRWG*IEGVQNLSNRSYRTT 213
Score = 65.7 bits (137), Expect(2) = 1e-022
Identities = 33/57 (57%), Positives = 37/57 (64%)
Frame = +1 / +1
Query: 13 VVLDRLGKFCIVSGHPHL*YSVAFHPSIQERG*GT*IYRALQIPRLPVLTGPISYKC 183
V+ D L KFC S HPHL Y +AFHPSI E *G+*IYRA Q +L LT I KC
Sbjct: 217 VL*DLLDKFCTPSIHPHLEYLMAFHPSI*EHA*GS*IYRAQQTSKLLKLTDLILDKC 387
Score = 58.3 bits (121), Expect(2) = 1e-022
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +1 / +1
Query: 238 FCWNSYKVDL*ILESFPPLNESW*QYVYKDDKMNEPLP 351
FCW++Y D *ILE F +ES *+YVYK D+MNEPLP
Sbjct: 442 FCWSNYTSDS*ILEFFLLFHESS*RYVYKGDRMNEPLP 555
>gb|CA016336.1|CA016336 HV09G16u HV Hordeum vulgare subsp. vulgare cDNA clone HV09G16
3-PRIME, mRNA sequence
Length = 540
Score = 227 bits (491), Expect = 2e-059
Identities = 89/111 (80%), Positives = 102/111 (91%)
Frame = -1 / -3
Query: 334 SCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLFIRERGRFKSESIYMRSGQLT 155
SCRLCIHIATKIH KEE+TPKF NR CSCSSK+GTVYHLF+RERGRFK+E+IY+RS QLT
Sbjct: 538 SCRLCIHIATKIHEKEEKTPKFMNRSCSCSSKRGTVYHLFVRERGRFKTENIYLRSDQLT 359
Query: 154 LGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQAL 2
LGAL+SAV KF SL HVP+WKDERP SIRGGD+LK+Y+IYP+GLT+RQAL
Sbjct: 358 LGALKSAVHDKFSSLKHVPIWKDERPSSIRGGDELKVYKIYPIGLTERQAL 206
Score = 148 bits (318), Expect = 1e-035
Identities = 70/108 (64%), Positives = 73/108 (67%)
Frame = +3 / +3
Query: 12 RCVRPTG*ILYSFRXXXXXXXXXXXXFHTGTWLRDLNLPSTADSKAPSVNWPDLI*MLSD 191
R VRP G*ILY+F FH GT LR+LNL TAD KAP VN DL *M S
Sbjct: 216 RSVRPIG*ILYTFNSSPPRILDGLSSFHIGTCLRELNLSCTADFKAPKVN*SDLR*MFSV 395
Query: 192 LNRPLSRINKW*TVPFLLEQLQGRFVNFGVLSSFK*ILVAICIQRRQD 335
LNRPLS NKW TVP LLEQL RF+NFGV SSF *I VAICIQRRQD
Sbjct: 396 LNRPLSLTNKWYTVPLLLEQLHERFINFGVFSSFS*IFVAICIQRRQD 539
Score = 147 bits (315), Expect = 3e-035
Identities = 68/108 (62%), Positives = 74/108 (68%)
Frame = +2 / +2
Query: 8 LTLC*TDWVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQC*LARSHINAL 187
L+ C T W+N V Q IPTSNT WPFILPYRN++EG KF H R Q S *L S IN L
Sbjct: 212 LSFCKTYWINFVHLQFIPTSNT*WPFILPYRNMLEGAKFIVHSRLQSS*S*LI*S*INVL 391
Query: 188 *LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTT 331
LKPPSLSDK VV C FAG TR+I KFWS F MNL S+MYTK T
Sbjct: 392 CLKPPSLSDK*VVYCSSFAGATTRAIHKFWSFFFFFMNLRSDMYTKAT 535
Score = 133 bits (286), Expect = 3e-031
Identities = 65/108 (60%), Positives = 76/108 (70%)
Frame = -2 / -1
Query: 336 HLVVFVYILLPRFI*RRKGLQNLQIDLVAVPAKRGQFTTCLSEREGGLSQRAFI*DRAS* 157
H V FVYI L RF+ ++K LQNL I V PAK Q+TT LSEREGGL QR FI*D+ S*
Sbjct: 540 HPVAFVYISLRRFMKKKKKLQNL*IARVVAPAKEEQYTTYLSEREGGLRQRTFI*DQIS* 361
Query: 156 HWEPWNLQCSVNLGPSTTFLYGRMKGHRVLEVGMT*NYTEFTQSV*HN 13
E +L C++NL PS+ FLYGRMKGH+V EVGM * T+F Q V N
Sbjct: 360 L*EL*SLLCTINLAPSSMFLYGRMKGHQVFEVGMN*RCTKFIQ*VLQN 217
Score = 133 bits (284), Expect = 6e-031
Identities = 66/109 (60%), Positives = 80/109 (73%)
Frame = -3 / -2
Query: 335 ILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVYPRERAV*VREHLYEIGPVN 156
ILS LYTY Y+DS K K+SKIY+S +*L QQK +S+PL+ RERAV* REHL +I VN
Sbjct: 539 ILSPLYTYRYEDS*KRRKNSKIYESLV*LLQQKRNSIPLICQRERAV*DREHLSKIRSVN 360
Query: 155 TGSLGICSAR*I*VPQPRSCMEG*KATEY*RWG*PETIQNLPSRSNTTS 9
S +C AR*I*+PQ S MEG*KA +Y RWG* E +QNL +RS T+
Sbjct: 359 FRSFEVCCAR*I*LPQACSYMEG*KAIKYSRWG*IEGVQNLSNRSYRTT 213
Score = 65.7 bits (137), Expect(2) = 1e-018
Identities = 33/57 (57%), Positives = 37/57 (64%)
Frame = +1 / +1
Query: 13 VVLDRLGKFCIVSGHPHL*YSVAFHPSIQERG*GT*IYRALQIPRLPVLTGPISYKC 183
V+ D L KFC S HPHL Y +AFHPSI E *G+*IYRA Q +L LT I KC
Sbjct: 217 VL*DLLDKFCTPSIHPHLEYLMAFHPSI*EHA*GS*IYRAQQTSKLLKLTDLILDKC 387
Score = 45.1 bits (92), Expect(2) = 1e-018
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +1 / +1
Query: 238 FCWNSYKVDL*ILESFPPLNESW*QYVYKDDKM 336
FCW++Y D *ILE F +ES *+YVYK D+M
Sbjct: 442 FCWSNYTSDS*ILEFFLLFHESS*RYVYKGDRM 540
>gb|CA005005.1|CA005005 HU12K09u HU Hordeum vulgare subsp. vulgare cDNA clone HU12K09
3-PRIME, mRNA sequence
Length = 543
Score = 192 bits (413), Expect(2) = 1e-056
Identities = 74/97 (76%), Positives = 89/97 (91%)
Frame = -1 / -1
Query: 292 KEERTPKFTNRPCSCSSKKGTVYHLFIRERGRFKSESIYMRSGQLTLGALESAVLGKFRS 113
K+++TPKF NR CSCSSK+GTVYHLF+RERGRFK+E+IY+RS QLTLGAL+SAV KF S
Sbjct: 495 KKKKTPKFMNRSCSCSSKRGTVYHLFVRERGRFKTENIYLRSDQLTLGALKSAVHDKFSS 316
Query: 112 LNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQAL 2
L HVP+WKDERP SIRGGD+LK+Y+IYP+GLT+RQAL
Sbjct: 315 LKHVPIWKDERPSSIRGGDELKVYKIYPIGLTERQAL 205
Score = 132 bits (282), Expect(2) = 5e-036
Identities = 61/95 (64%), Positives = 66/95 (69%)
Frame = +2 / +1
Query: 8 LTLC*TDWVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQC*LARSHINAL 187
L+ C T W+N V Q IPTSNT WPFILPYRN++EG KF H R Q S *L S IN L
Sbjct: 211 LSFCKTYWINFVHLQFIPTSNT*WPFILPYRNMLEGAKFIVHSRLQSS*S*LI*S*INVL 390
Query: 188 *LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL 292
LKPPSLSDK VV C FAG TR+I KFWS FLL
Sbjct: 391 CLKPPSLSDK*VVYCSSFAGATTRAIHKFWSFFLL 495
Score = 119 bits (254), Expect(2) = 6e-030
Identities = 58/93 (62%), Positives = 66/93 (70%)
Frame = -2 / -2
Query: 291 RRKGLQNLQIDLVAVPAKRGQFTTCLSEREGGLSQRAFI*DRAS*HWEPWNLQCSVNLGP 112
RRK LQNL I V PAK Q+TT LSEREGGL QR FI*D+ S* E +L C++NL P
Sbjct: 494 RRKKLQNL*IARVVAPAKEEQYTTYLSEREGGLRQRTFI*DQIS*L*EL*SLLCTINLAP 315
Query: 111 STTFLYGRMKGHRVLEVGMT*NYTEFTQSV*HN 13
S+ FLYGRMKGH+V EVGM * T+F Q V N
Sbjct: 314 SSMFLYGRMKGHQVFEVGMN*RCTKFIQ*VLQN 216
Score = 117 bits (250), Expect(2) = 3e-028
Identities = 56/94 (59%), Positives = 59/94 (62%)
Frame = +3 / +2
Query: 12 RCVRPTG*ILYSFRXXXXXXXXXXXXFHTGTWLRDLNLPSTADSKAPSVNWPDLI*MLSD 191
R VRP G*ILY+F FH GT LR+LNL TAD KAP VN DL *M S
Sbjct: 215 RSVRPIG*ILYTFNSSPPRILDGLSSFHIGTCLRELNLSCTADFKAPKVN*SDLR*MFSV 394
Query: 192 LNRPLSRINKW*TVPFLLEQLQGRFVNFGVLSSF 293
LNRPLS NKW TVP LLEQL RF+NFGV F
Sbjct: 395 LNRPLSLTNKWYTVPLLLEQLHERFINFGVFFFF 496
Score = 111 bits (238), Expect = 1e-024
Identities = 56/95 (58%), Positives = 69/95 (72%)
Frame = -3 / -3
Query: 293 KGGKDSKIYKSTL*LFQQKGDSLPLVYPRERAV*VREHLYEIGPVNTGSLGICSAR*I*V 114
K K+SKIY+S +*L QQK +S+PL+ RERAV* REHL +I VN S +C AR*I*+
Sbjct: 496 KEEKNSKIYESLV*LLQQKRNSIPLICQRERAV*DREHLSKIRSVNFRSFEVCCAR*I*L 317
Query: 113 PQPRSCMEG*KATEY*RWG*PETIQNLPSRSNTTS 9
PQ S MEG*KA +Y RWG* E +QNL +RS T+
Sbjct: 316 PQACSYMEG*KAIKYSRWG*IEGVQNLSNRSYRTT 212
Score = 65.7 bits (137), Expect(3) = 7e-016
Identities = 33/57 (57%), Positives = 37/57 (64%)
Frame = +1 / +3
Query: 13 VVLDRLGKFCIVSGHPHL*YSVAFHPSIQERG*GT*IYRALQIPRLPVLTGPISYKC 183
V+ D L KFC S HPHL Y +AFHPSI E *G+*IYRA Q +L LT I KC
Sbjct: 216 VL*DLLDKFCTPSIHPHLEYLMAFHPSI*EHA*GS*IYRAQQTSKLLKLTDLILDKC 386
Score = 46.4 bits (95), Expect(2) = 1e-056
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = -1 / -3
Query: 337 SSCRLCIHIATKIHLKEERTPK 272
SSCRLCIHIATKIH KEE+ K
Sbjct: 541 SSCRLCIHIATKIHEKEEKNSK 476
Score = 37.3 bits (75), Expect(2) = 5e-036
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +3 / +3
Query: 285 SSFK*ILVAICIQRRQDE 338
SSF *I VAICIQRRQDE
Sbjct: 489 SSFS*IFVAICIQRRQDE 542
Score = 29.5 bits (58), Expect(2) = 6e-030
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3 / -2
Query: 338 FILSSLYTYCYQDSFKGGK 282
FILS LYTY Y+DS K K
Sbjct: 542 FILSPLYTYRYEDS*KRRK 486
Score = 27.6 bits (54), Expect(3) = 7e-016
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / +3
Query: 238 FCWNSYKVDL*ILESF 285
FCW++Y D *ILE F
Sbjct: 441 FCWSNYTSDS*ILEFF 488
Score = 25.8 bits (50), Expect(2) = 3e-028
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1 / +1
Query: 295 NESW*QYVYKDDKMN 339
+ES *+YVYK D+MN
Sbjct: 499 HESS*RYVYKGDRMN 543
Score = 24.4 bits (47), Expect(3) = 7e-016
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2 / +2
Query: 284 FLL*MNLGSNMYTKTT 331
F MNL S+MYTK T
Sbjct: 488 FFFFMNLRSDMYTKAT 535
>gb|BM099511.2|BM099511 EBes01_SQ003_H09_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ003_H09 5', mRNA sequence
Length = 689
Score = 208 bits (448), Expect = 1e-053
Identities = 84/100 (84%), Positives = 92/100 (92%)
Frame = -1 / +1
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIH KEE+TPKF NR CSCSSK+GTVYHLF
Sbjct: 388 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHEKEEKTPKFMNRSCSCSSKRGTVYHLF 567
Query: 214 IRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPV 95
+RERGRFK+E+IY+RS QLTLGAL+SAV KF SL HVP+
Sbjct: 568 VRERGRFKTENIYLRSDQLTLGALKSAVHDKFSSLKHVPI 687
Score = 166 bits (357), Expect = 5e-041
Identities = 77/100 (77%), Positives = 79/100 (79%)
Frame = +3 / -1
Query: 93 HTGTWLRDLNLPSTADSKAPSVNWPDLI*MLSDLNRPLSRINKW*TVPFLLEQLQGRFVN 272
H GT LR+LNL TAD KAP VN DL *M S LNRPLS NKW TVP LLEQL RF+N
Sbjct: 689 HIGTCLRELNLSCTADFKAPKVN*SDLR*MFSVLNRPLSLTNKWYTVPLLLEQLHERFIN 510
Query: 273 FGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPSY 392
FGV SSF *I VAICIQRRQDE*TAAMSI ALKESDGPSY
Sbjct: 509 FGVFSSFS*IFVAICIQRRQDE*TAAMSISALKESDGPSY 390
Score = 141 bits (303), Expect = 2e-033
Identities = 66/100 (66%), Positives = 71/100 (71%)
Frame = +2 / -3
Query: 95 YRNVVEGPKFTEHCRFQGSQC*LARSHINAL*LKPPSLSDKQVVNCPLFAGTATRSICKF 274
YRN++EG KF H R Q S *L S IN L LKPPSLSDK VV C FAG TR+I KF
Sbjct: 687 YRNMLEGAKFIVHSRLQSS*S*LI*S*INVLCLKPPSLSDK*VVYCSSFAGATTRAIHKF 508
Query: 275 WSPFLL*MNLGSNMYTKTTR*MNRCHVDKSFERIRWTIIL 394
WS F MNL S+MYTK T *MNRCHV+K ERIRWTIIL
Sbjct: 507 WSFFFFFMNLRSDMYTKATG*MNRCHVNKCLERIRWTIIL 388
Score = 134 bits (288), Expect = 2e-031
Identities = 64/100 (64%), Positives = 74/100 (74%)
Frame = -2 / +2
Query: 393 SMMVHLILSKLLSTWQRFIHLVVFVYILLPRFI*RRKGLQNLQIDLVAVPAKRGQFTTCL 214
SMMVHLILS+ L TWQRFIH V FVYI L RF+ ++K LQNL I V PAK Q+TT L
Sbjct: 389 SMMVHLILSRHLLTWQRFIHPVAFVYISLRRFMKKKKKLQNL*IARVVAPAKEEQYTTYL 568
Query: 213 SEREGGLSQRAFI*DRAS*HWEPWNLQCSVNLGPSTTFLY 94
SEREGGL QR FI*D+ S* E +L C++NL PS+ FLY
Sbjct: 569 SEREGGLRQRTFI*DQIS*L*EL*SLLCTINLAPSSMFLY 688
Score = 134 bits (287), Expect = 2e-031
Identities = 65/100 (65%), Positives = 76/100 (76%)
Frame = -3 / +3
Query: 392 V*WSI*FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVY 213
V*WSI*FFQ +Y HGSGSFILS LYTY Y+DS K K+SKIY+S +*L QQK +S+PL+
Sbjct: 390 V*WSI*FFQGTY*HGSGSFILSPLYTYRYEDS*KRRKNSKIYESLV*LLQQKRNSIPLIC 569
Query: 212 PRERAV*VREHLYEIGPVNTGSLGICSAR*I*VPQPRSCM 93
RERAV* REHL +I VN S +C AR*I*+PQ S M
Sbjct: 570 QRERAV*DREHLSKIRSVNFRSFEVCCAR*I*LPQACSYM 689
Score = 83.5 bits (176), Expect(2) = 1e-018
Identities = 35/52 (67%), Positives = 41/52 (78%)
Frame = +1 / -2
Query: 238 FCWNSYKVDL*ILESFPPLNESW*QYVYKDDKMNEPLPCR*EL*KNQMDHHT 393
FCW++Y D *ILE F +ES *+YVYK D+MNEPLPC+* *KNQMDHHT
Sbjct: 544 FCWSNYTSDS*ILEFFLLFHESS*RYVYKGDRMNEPLPCQ*VP*KNQMDHHT 389
Score = 27.6 bits (54), Expect(2) = 1e-018
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1 / -2
Query: 100 ERG*GT*IYRALQIPRLPVLTGPISYKC 183
E *G+*IYRA Q +L LT I KC
Sbjct: 682 EHA*GS*IYRAQQTSKLLKLTDLILDKC 599
>gb|AL500587.1|AL500587 AL500587 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01C14u 3', mRNA sequence
Length = 526
Score = 158 bits (339), Expect(2) = 4e-041
Identities = 62/81 (76%), Positives = 74/81 (91%)
Frame = -1 / -2
Query: 244 SKKGTVYHLFIRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIR 65
SK+GTVYHL +RERGRFK+E+IY+RS QLTLGAL+SAV KF SL HVP+WKDERP SIR
Sbjct: 489 SKRGTVYHLXVRERGRFKTENIYLRSDQLTLGALKSAVHDKFSSLKHVPIWKDERPSSIR 310
Query: 64 GGDDLKLYRIYPVGLTQRQAL 2
GGD+LK+Y+IYP+GLT+RQAL
Sbjct: 309 GGDELKVYKIYPIGLTERQAL 247
Score = 107 bits (228), Expect(2) = 5e-024
Identities = 50/80 (62%), Positives = 54/80 (67%)
Frame = +2 / +1
Query: 8 LTLC*TDWVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQC*LARSHINAL 187
L+ C T W+N V Q IPTSNT WPFILPYRN++EG KF H R Q S *L S IN L
Sbjct: 253 LSFCKTYWINFVHLQFIPTSNT*WPFILPYRNMLEGAKFIVHSRLQSS*S*LI*S*INVL 432
Query: 188 *LKPPSLSDKQVVNCPLFAG 247
LKPPSLSD VV C FAG
Sbjct: 433 CLKPPSLSDX*VVYCSSFAG 492
Score = 104 bits (222), Expect = 2e-022
Identities = 49/78 (62%), Positives = 57/78 (73%)
Frame = -2 / -3
Query: 246 PAKRGQFTTCLSEREGGLSQRAFI*DRAS*HWEPWNLQCSVNLGPSTTFLYGRMKGHRVL 67
PAK Q+TT LSEREGGL QR FI*D+ S* E +L C++NL PS+ FLYGRMKGH+V
Sbjct: 491 PAKEEQYTTXLSEREGGLRQRTFI*DQIS*L*EL*SLLCTINLAPSSMFLYGRMKGHQVF 312
Query: 66 EVGMT*NYTEFTQSV*HN 13
EVGM * T+F Q V N
Sbjct: 311 EVGMN*RCTKFIQ*VLQN 258
Score = 93.2 bits (197), Expect = 6e-019
Identities = 47/79 (59%), Positives = 56/79 (70%)
Frame = -3 / -1
Query: 245 QQKGDSLPLVYPRERAV*VREHLYEIGPVNTGSLGICSAR*I*VPQPRSCMEG*KATEY* 66
QQK +S+PL RERAV* REHL +I VN S +C AR*I*+PQ S MEG*KA +Y
Sbjct: 490 QQKRNSIPLXCQRERAV*DREHLSKIRSVNFRSFEVCCAR*I*LPQACSYMEG*KAIKYS 311
Query: 65 RWG*PETIQNLPSRSNTTS 9
RWG* E +QNL +RS T+
Sbjct: 310 RWG*IEGVQNLSNRSYRTT 254
Score = 91.3 bits (193), Expect = 2e-018
Identities = 45/78 (57%), Positives = 47/78 (60%)
Frame = +3 / +2
Query: 12 RCVRPTG*ILYSFRXXXXXXXXXXXXFHTGTWLRDLNLPSTADSKAPSVNWPDLI*MLSD 191
R VRP G*ILY+F FH GT LR+LNL TAD KAP VN DL *M S
Sbjct: 257 RSVRPIG*ILYTFNSSPPRILDGLSSFHIGTCLRELNLSCTADFKAPKVN*SDLR*MFSV 436
Query: 192 LNRPLSRINKW*TVPFLL 245
LNRPLS KW TVP LL
Sbjct: 437 LNRPLSLTXKWYTVPLLL 490
Score = 65.7 bits (137), Expect = 1e-010
Identities = 33/57 (57%), Positives = 37/57 (64%)
Frame = +1 / +3
Query: 13 VVLDRLGKFCIVSGHPHL*YSVAFHPSIQERG*GT*IYRALQIPRLPVLTGPISYKC 183
V+ D L KFC S HPHL Y +AFHPSI E *G+*IYRA Q +L LT I KC
Sbjct: 258 VL*DLLDKFCTPSIHPHLEYLMAFHPSI*EHA*GS*IYRAQQTSKLLKLTDLILDKC 428
Score = 28.1 bits (55), Expect(2) = 4e-041
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1 / -1
Query: 277 PKFTNRPCSCSSKK 236
PKF NR CSC +K
Sbjct: 523 PKFMNRSCSCXQQK 482
Score = 21.7 bits (41), Expect(2) = 5e-024
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3 / +3
Query: 237 FLLEQLQGRFVNFG 278
F QL RF+NFG
Sbjct: 483 FCWXQLHERFINFG 524
>gb|CA008944.1|CA008944 HU12K09r HU Hordeum vulgare subsp. vulgare cDNA clone HU12K09
5-PRIME, mRNA sequence
Length = 551
Score = 40.9 bits (83), Expect = 0.003
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -1 / +2
Query: 394 KYDGPSDSFKALIDMA 347
KYDGPSDSFKALIDMA
Sbjct: 503 KYDGPSDSFKALIDMA 550
Score = 36.3 bits (73), Expect = 0.080
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2 / -2
Query: 347 CHVDKSFERIRWTIIL 394
CHV+K ERIRWTIIL
Sbjct: 550 CHVNKCLERIRWTIIL 503
Score = 34.1 bits (68), Expect = 0.39
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3 / -3
Query: 348 AMSIRALKESDGPSY 392
AMSI ALKESDGPSY
Sbjct: 549 AMSISALKESDGPSY 505
Score = 33.1 bits (66), Expect = 0.74
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1 / -1
Query: 346 LPCR*EL*KNQMDHHT 393
LPC+* *KNQMDHHT
Sbjct: 551 LPCQ*VP*KNQMDHHT 504
Score = 32.2 bits (64), Expect = 1.4
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2 / +3
Query: 393 SMMVHLILSKLLSTWQ 346
SMMVHLILS+ L TWQ
Sbjct: 504 SMMVHLILSRHLLTWQ 551
Score = 30.4 bits (60), Expect = 4.9
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -3 / +1
Query: 392 V*WSI*FFQSSYRHG 348
V*WSI*FFQ +Y HG
Sbjct: 505 V*WSI*FFQGTY*HG 549
>gb|BE421033.1|BE421033 HWM005.B02 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM005.B02, mRNA sequence
Length = 1135
Score = 33.1 bits (66), Expect = 0.74
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3 / -3
Query: 368 QSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKI 270
QS YR+ ++ LYT Y+ KGGK KI
Sbjct: 596 QSMYRYQVNKLLMEFLYTAIYKPKGKGGKRGKI 498
>gb|AJ433753.1|AJ433753 AJ433753 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200069H07F1, mRNA sequence
Length = 405
Score = 33.1 bits (66), Expect = 0.74
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3 / -1
Query: 368 QSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKI 270
QS YR+ ++ LYT Y+ KGGK KI
Sbjct: 381 QSMYRYQVNKLLMEFLYTAIYKPKGKGGKRGKI 283
>gb|BQ663786.1|BQ663786 HU04A23u HU Hordeum vulgare subsp. vulgare cDNA clone HU04A23
3-PRIME, mRNA sequence
Length = 574
Score = 33.1 bits (66), Expect = 0.74
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3 / +3
Query: 368 QSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKI 270
QS YR+ ++ LYT Y+ KGGK KI
Sbjct: 21 QSMYRYQVNKLLMEFLYTAIYKPKGKGGKRGKI 119
>gb|BI951776.1|BI951776 HVSMEm0002L16f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0002L16f, mRNA sequence
Length = 815
Score = 32.2 bits (64), Expect = 1.4
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2 / -3
Query: 291 RRKGLQNLQIDLVAVPAKRGQFTTCLSEREG 199
R KG+ + D V P KRG+F TCLS G
Sbjct: 609 RPKGVCA*KTDKVGRPVKRGEFETCLSGFSG 517
>gb|BU996395.1|BU996395 HM13H12r HM Hordeum vulgare subsp. vulgare cDNA clone HM13H12
5-PRIME, mRNA sequence
Length = 653
Score = 32.2 bits (64), Expect = 1.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / +3
Query: 117 LNLPSTADSKAPSVNWPDLI 176
L LP ++DS PS+ WPDLI
Sbjct: 117 LLLPLSSDSSVPSLPWPDLI 176
>gb|BU996596.1|BU996596 HM14C03r HM Hordeum vulgare subsp. vulgare cDNA clone HM14C03
5-PRIME, mRNA sequence
Length = 573
Score = 32.2 bits (64), Expect = 1.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / +1
Query: 117 LNLPSTADSKAPSVNWPDLI 176
L LP ++DS PS+ WPDLI
Sbjct: 67 LLLPLSSDSSVPSLPWPDLI 126
>gb|BJ454377.1|BJ454377 BJ454377 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24d01 5', mRNA sequence
Length = 237
Score = 28.6 bits (56), Expect(2) = 1.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1 / -2
Query: 271 FTNRPCSCSSKKGTVYHLFIRERGRFKSESIYMRSGQ 161
F+ C C+ KKG++Y L + E R + I++ G+
Sbjct: 182 FSIASCLCAHKKGSLYDLNLLEPXRVEWARIWLVLGE 72
Score = 18.9 bits (35), Expect(2) = 1.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2 / -1
Query: 372 LSKLLSTWQRFIHLVVFV 319
LS +T F+H +VFV
Sbjct: 213 LSPCKNTISCFLHRIVFV 160
>gb|CA024519.1|CA024519 HZ49I12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49I12
5-PRIME, mRNA sequence
Length = 582
Score = 31.8 bits (63), Expect = 1.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / -2
Query: 379 SDSFKALIDMAAVHSSCRLCIHI 311
SDS A+ID ++ SC CIHI
Sbjct: 269 SDSSHAIIDFSSSRDSCGFCIHI 201
>gb|CA027905.1|CA027905 HZ60G13r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60G13
5-PRIME, mRNA sequence
Length = 427
Score = 31.8 bits (63), Expect = 1.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / -3
Query: 379 SDSFKALIDMAAVHSSCRLCIHI 311
SDS A+ID ++ SC CIHI
Sbjct: 269 SDSSHAIIDFSSSRDSCGFCIHI 201
>gb|AV910002.1|AV910002 AV910002 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak2l24 5', mRNA sequence
Length = 491
Score = 29.0 bits (57), Expect(2) = 2.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1 / -1
Query: 271 FTNRPCSCSSKKGTVYHLFIRERGRFKSESIYMRSGQ 161
F+ C C+ KKG++Y L + E R + I++ G+
Sbjct: 290 FSIASCLCAHKKGSLYDLNLLEPSRVEWARIWLVLGE 180
Score = 18.9 bits (35), Expect(2) = 2.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2 / -3
Query: 372 LSKLLSTWQRFIHLVVFV 319
LS +T F+H +VFV
Sbjct: 321 LSPCKNTISCFLHRIVFV 268
>gb|BU969235.1|BU969235 HB10P04r BC Hordeum vulgare subsp. vulgare cDNA clone HB10P04
5-PRIME, mRNA sequence
Length = 516
Score = 29.0 bits (57), Expect(2) = 2.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1 / -2
Query: 271 FTNRPCSCSSKKGTVYHLFIRERGRFKSESIYMRSGQ 161
F+ C C+ KKG++Y L + E R + I++ G+
Sbjct: 362 FSIASCLCAHKKGSLYDLNLLEPSRVEWARIWLVLGE 252
Score = 18.9 bits (35), Expect(2) = 2.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2 / -1
Query: 372 LSKLLSTWQRFIHLVVFV 319
LS +T F+H +VFV
Sbjct: 393 LSPCKNTISCFLHRIVFV 340
>gb|AL500026.1|AL500026 AL500026 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04J05r 3', mRNA sequence
Length = 531
Score = 28.1 bits (55), Expect(2) = 4.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1 / +3
Query: 271 FTNRPCSCSSKKGTVYHLFIRERGRFKSESIYMRSG 164
F+ C C+ KKG++Y L + E R + I++ G
Sbjct: 192 FSIASCLCAHKKGSLYDLNLLEPSRVEWARIWLVLG 299
Score = 18.9 bits (35), Expect(2) = 4.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2 / +2
Query: 372 LSKLLSTWQRFIHLVVFV 319
LS +T F+H +VFV
Sbjct: 161 LSPCKNTISCFLHRIVFV 214
>emb|Y15802.1|HVSUCSYN2 Hordeum vulgare Ss2 gene
Length = 5785
Score = 30.4 bits (60), Expect = 4.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2 / -2
Query: 312 LLPRFI*RRKGLQNLQIDLVAVPAKRGQ 229
+LP I RKG Q L++ L VPA R Q
Sbjct: 5439 VLPETIDTRKGHQPLRVQLPGVPASRSQ 5356
>gb|BF261877.2|BF261877 HV_CEa0002H13f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002H13f, mRNA sequence
Length = 838
Score = 29.9 bits (59), Expect = 6.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3 / +2
Query: 386 WSI*FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL 255
W I F + GSF+LSS + Y+ + GG ++ ST+
Sbjct: 41 WEIVVFWGMFWQSGGSFLLSSFPSTSYRPFW*GGSKFLLHLSTV 172
>gb|BQ458542.1|BQ458542 HA04O18r HA Hordeum vulgare subsp. vulgare cDNA clone HA04O18
5-PRIME, mRNA sequence
Length = 318
Score = 29.9 bits (59), Expect = 6.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1 / +1
Query: 211 RERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIR 65
R R R + + + + L AL + V + R P W RPP++R
Sbjct: 100 RRRRRRRRRCVCLPRSRPRLSALPATVSSRRRGAPGGPGWPSRRPPAVR 246
>gb|BQ764506.1|BQ764506 EBca01_SQ004_G02_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_G02 5', mRNA sequence
Length = 556
Score = 29.5 bits (58), Expect = 9.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3 / -3
Query: 359 YRHGSGSFILSSLYTYCYQDSFKGGKDSKI 270
YR+ ++ LYT Y+ KGGK KI
Sbjct: 554 YRYQVNKLLMEFLYTAIYKPKGKGGKRGKI 465
>gb|BU988359.1|BU988359 HF17G15r HF Hordeum vulgare subsp. vulgare cDNA clone HF17G15
5-PRIME, mRNA sequence
Length = 619
Score = 29.5 bits (58), Expect = 9.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1 / -3
Query: 337 SSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKG 233
++CR C + + EE P RPC+ S+ G
Sbjct: 194 AACRSCRRPSRRCRANEESPPSSAPRPCTAPSRCG 90
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 182,563,819
Number of Sequences: 312970
Number of extensions: 2383474
Number of successful extensions: 85112
Number of sequences better than 10.0: 29
length of database: 58,378,179
effective HSP length: 49
effective length of database: 43,042,649
effective search space used: 3486454569
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)