TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM14d12.yg.2.1
(593 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE060794.1|BE060794 HVSMEg0013G05f Hordeum vulgare pre-a... 329 1e-089
gb|BQ468970.1|BQ468970 HM02P11r HM Hordeum vulgare subsp. v... 323 6e-088
gb|CA015150.1|CA015150 HT13H01r HT Hordeum vulgare subsp. v... 313 7e-085
gb|CA019440.1|CA019440 HV11P23r HV Hordeum vulgare subsp. v... 300 5e-081
gb|BU999035.1|BU999035 HI12P13r HI Hordeum vulgare subsp. v... 297 2e-080
gb|AW982533.3|AW982533 HVSMEg0003I09f Hordeum vulgare pre-a... 284 2e-076
gb|BI956967.1|BI956967 HVSMEn0006I08f Hordeum vulgare rachi... 254 1e-073
gb|CA017986.1|CA017986 HV07A23r HV Hordeum vulgare subsp. v... 220 1e-065
gb|BI958001.1|BI958001 HVSMEn0012N14f Hordeum vulgare rachi... 175 4e-064
gb|CB882157.1|CB882157 HL01A17w HL Hordeum vulgare subsp. v... 240 6e-063
gb|BF260649.2|BF260649 HVSMEf0022J05f Hordeum vulgare seedl... 237 5e-062
gb|BU994416.1|BU994416 HM07A02r HM Hordeum vulgare subsp. v... 219 1e-056
gb|CA024787.1|CA024787 HZ50E24r HZ Hordeum vulgare subsp. v... 215 1e-055
gb|BI956417.1|BI956417 HVSMEn0003E01f Hordeum vulgare rachi... 198 2e-050
gb|BI957869.1|BI957869 HVSMEn0011N08f Hordeum vulgare rachi... 155 1e-037
gb|BI948539.1|BI948539 HVSMEl0010A07f Hordeum vulgare spike... 155 3e-037
gb|AV836682.1|AV836682 AV836682 K. Sato unpublished cDNA li... 154 4e-037
gb|BF624748.2|BF624748 HVSMEa0017K05f Hordeum vulgare seedl... 133 6e-031
gb|CK124710.1|CK124710 BES1824110c01 BES1824 Hordeum vulgar... 133 6e-031
gb|AV923682.1|AV923682 AV923682 K. Sato unpublished cDNA li... 114 2e-026
gb|CV058095.1|CV058095 BNEL34c4 Barley EST endosperm librar... 70 4e-025
gb|CV056841.1|CV056841 BNEL21b6 Barley EST endosperm librar... 70 5e-024
gb|BF255897.2|BF255897 HVSMEf0008C05f Hordeum vulgare seedl... 69 9e-024
gb|CV060551.1|CV060551 BNEL59d2 Barley EST endosperm librar... 70 3e-023
gb|BG300831.1|BG300831 HVSMEb0018J05f Hordeum vulgare seedl... 106 1e-022
gb|CA013673.1|CA013673 HT09C18r HT Hordeum vulgare subsp. v... 105 2e-022
gb|CV053799.1|CV053799 BNEL103c9 Barley EST endosperm libra... 104 4e-022
gb|CV054673.1|CV054673 BNEL112a7 Barley EST endosperm libra... 104 4e-022
gb|CV063264.1|CV063264 BNEL88d6 Barley EST endosperm librar... 104 4e-022
gb|CV063381.1|CV063381 BNEL89f8 Barley EST endosperm librar... 104 4e-022
>gb|BE060794.1|BE060794 HVSMEg0013G05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013G05f, mRNA sequence
Length = 624
Score = 329 bits (712), Expect = 1e-089
Identities = 130/189 (68%), Positives = 156/189 (82%)
Frame = -1 / +1
Query: 569 PLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFCKKHKIEPR 390
PL+ A T+LSILAV YPVDK+ CYVSDDGAAMLTFE L+ET FA+KWVPFCKK+ IEPR
Sbjct: 1 PLVTANTILSILAVDYPVDKLSCYVSDDGAAMLTFEGLSETSEFAKKWVPFCKKYSIEPR 180
Query: 389 APEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEGGWSLPEGA 210
APEWYF QKIDYL++KV P FVR+RRAMKREYEEFK+ IN + A ++KVPE GW++ +G
Sbjct: 181 APEWYFQQKIDYLKDKVVPNFVRDRRAMKREYEEFKIRINALVAKAQKVPEEGWTMQDGT 360
Query: 209 PWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAGALNALLRT 30
PW GNNVRDH GM+QV G +D GN+LP LVYVSREK PG++ +KKAGA+NAL+R
Sbjct: 361 PWPGNNVRDHPGMIQVFLGQSGGLDVEGNELPRLVYVSREKTPGYNPYKKAGAINALVRV 540
Query: 29 SAILSNAPF 3
SA L+NAP+
Sbjct: 541 SAGLTNAPY 567
Score = 188 bits (405), Expect = 2e-047
Identities = 101/184 (54%), Positives = 112/184 (60%)
Frame = +1 / -2
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GAL AE R+NA APAFL PG+FS ET*TN+GS FP++S P T IP S
Sbjct: 563 GALVSPAETRTNALIAPAFLYGL*PGVFSLET*TNRGSSFPSTSRPPL*PRKT*IIPG*S 384
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
RTLFP G PS HP SGT LA + LNSSYSLFIA S T G T S R*SIF
Sbjct: 383 RTLFPGQGVPSCMVHPSSGTFWALATKALIRILNSSYSLFIALLSLTKFGTTLSFR*SIF 204
Query: 367 *AKYHSGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDK 546
KYHSGARGSIL FLQKGTHF AN +T*Q++LSTG* TA +D+
Sbjct: 203 C*KYHSGARGSILYFLQKGTHFFANSDVSDNPSNVSMAAPSSET*QESLSTG*STARIDR 24
Query: 547 TVXA 558
V A
Sbjct: 23 IVFA 12
Score = 96.4 bits (204), Expect(2) = 3e-021
Identities = 45/130 (34%), Positives = 69/130 (53%)
Frame = +3 / -1
Query: 39 QCIQGTSFFMMIMSRPFLT*NIDQPRQXXXXXXXXXXXXXXXXXXXGMVSNIISMPWSSF 218
QC+ TS + +++ F +*NI+Q RQ ++++I+S P S+
Sbjct: 531 QCVNSTSLLVWVIAWRFFS*NINQSRQLISFHIKATTLTKEDLNHSRVITDIVSWPGSTI 352
Query: 219 W*GPSSLGNFA*ISSYCVYVNLKFFVFSLHCTSFSNKLWVNLFS*IVNFLSKIPFRSPRL 398
GPS L NF S+ + +L+F + SLHC+ NK+W +L +V L K+P S RL
Sbjct: 351 LHGPSFLRNFLGFSNQGIDSDLEFLILSLHCSPVPNKVWYHLVFQVVYLLLKVPLWSTRL 172
Query: 399 DFVFLTEGNP 428
+ V LTE NP
Sbjct: 171 NTVLLTERNP 142
Score = 24.9 bits (48), Expect(2) = 3e-021
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3 / -1
Query: 486 IIRHIAANFINRIXXSXYGQNCVCNN*R 569
IIR+IA +NRI S + VC +*R
Sbjct: 84 IIRNIARELVNRIIYSQDR*DSVCCD*R 1
>gb|BQ468970.1|BQ468970 HM02P11r HM Hordeum vulgare subsp. vulgare cDNA clone HM02P11
5-PRIME, mRNA sequence
Length = 619
Score = 323 bits (699), Expect = 6e-088
Identities = 125/183 (68%), Positives = 150/183 (81%)
Frame = -1 / +2
Query: 551 TVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFCKKHKIEPRAPEWYF 372
TVLSILAV YPV+K+ CYVSDDG+AMLTFE+L ET FAR+WVPFCKK IEPR PE+YF
Sbjct: 2 TVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKFSIEPRTPEFYF 181
Query: 371 AQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEGGWSLPEGAPWHGNN 192
+QKIDYL++K+HP FV+ERRAMKR+YEEFKV IN + A ++K PE GW + +G PW GNN
Sbjct: 182 SQKIDYLKDKIHPSFVKERRAMKRDYEEFKVRINALVAKAQKTPEEGWVMQDGTPWPGNN 361
Query: 191 VRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAGALNALLRTSAILSN 12
RDH GM+QV G D GN+LP LVYVSREKRPG+ HHKKAGA+NAL+R SA+L+N
Sbjct: 362 SRDHPGMIQVFLGETGARDYDGNELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTN 541
Query: 11 APF 3
AP+
Sbjct: 542 APY 550
Score = 165 bits (355), Expect = 2e-040
Identities = 89/182 (48%), Positives = 101/182 (55%)
Frame = +1 / -2
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GA R A+ R+ AF APAFL PGLFS ET T++GS FP+ S P T +P WS
Sbjct: 546 GAFVRTADTRTRAFIAPAFLWC*YPGLFSLETYTSRGSSFPS*SRAPVSPRKT*IMPGWS 367
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
R LFP HG PS P SG LA F+ TLNSS SLFIA RS T G S +*SIF
Sbjct: 366 RELFPGHGVPSCMTQPSSGVF*ALATKAFILTLNSS*SLFIALRSLTKDGCILSFK*SIF 187
Query: 367 *AKYHSGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDK 546
K +SG RGS+ FLQ GTH AN +T* + STG* TA MD
Sbjct: 186 CEK*NSGVRGSMENFLQNGTHLLANSAVSASDSNVSIADPSSET*HEIFSTG*STARMDS 7
Query: 547 TV 552
TV
Sbjct: 6 TV 1
>gb|CA015150.1|CA015150 HT13H01r HT Hordeum vulgare subsp. vulgare cDNA clone HT13H01
5-PRIME, mRNA sequence
Length = 526
Score = 313 bits (677), Expect = 7e-085
Identities = 123/174 (70%), Positives = 144/174 (82%)
Frame = -1 / +3
Query: 548 VLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFCKKHKIEPRAPEWYFA 369
VLSILAV YPVDKV CYVSDDG+AMLTFE+L+ET FARKWVPFCKKH IEPRAPE+YF
Sbjct: 3 VLSILAVDYPVDKVSCYVSDDGSAMLTFESLSETAEFARKWVPFCKKHNIEPRAPEFYFQ 182
Query: 368 QKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEGGWSLPEGAPWHGNNV 189
QKIDYL++K+ P FV+ERRAMKREYEEFK+ IN + A ++KVPE GW++ +G W GNN
Sbjct: 183 QKIDYLKDKIQPSFVKERRAMKREYEEFKIRINALVAKAQKVPEEGWTMADGTAWPGNNP 362
Query: 188 RDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAGALNALLRTS 27
RDH GM+QV G+ +D GN+LP LVYVSREKRPG HHKKAGA+NAL+R S
Sbjct: 363 RDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVS 524
Score = 172 bits (370), Expect = 2e-042
Identities = 90/175 (51%), Positives = 103/175 (58%)
Frame = +1 / -1
Query: 25 AEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWSRTLFPC 204
A+ R +AF APAFL* PGLFSRET T++G+ P+ S P T +P WS LFP
Sbjct: 526 ADTRISAFIAPAFL*CWKPGLFSRETYTSRGNSLPSVSRPPLCPKNT*IMPGWSLGLFPG 347
Query: 205 HGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF*AKYHS 384
PS HP SGT LA + + LNSSYSLFIAR S T G* S R*SIF K +S
Sbjct: 346 QAVPSAMVHPSSGTFWALATSALIRILNSSYSLFIARLSFTKEG*ILSFR*SIFC*K*NS 167
Query: 385 GARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDKT 549
GA GS+LCFLQ GTHF AN +T* TLSTG* TA MD+T
Sbjct: 166 GALGSMLCFLQNGTHFLANSAVSESDSNVNIAEPSSET*HDTLSTG*STARMDRT 2
>gb|CA019440.1|CA019440 HV11P23r HV Hordeum vulgare subsp. vulgare cDNA clone HV11P23
5-PRIME, mRNA sequence
Length = 619
Score = 300 bits (649), Expect = 5e-081
Identities = 116/165 (70%), Positives = 139/165 (84%)
Frame = -1 / +2
Query: 497 VSDDGAAMLTFEALTETCLFARKWVPFCKKHKIEPRAPEWYFAQKIDYLREKVHPEFVRE 318
VSDDGAAMLTFE L+ET FA+KWVPFCKK+ IEPRAPEWYF QKIDYL++KV P FVR+
Sbjct: 11 VSDDGAAMLTFEGLSETSEFAKKWVPFCKKYSIEPRAPEWYFQQKIDYLKDKVVPNFVRD 190
Query: 317 RRAMKREYEEFKVHINTVAANSRKVPEGGWSLPEGAPWHGNNVRDHAGMVQVITGNDCVM 138
RRAMKREYEEFK+ IN + A ++KVPE GW++ +G PW GNNVRDH GM+QV G +
Sbjct: 191 RRAMKREYEEFKIRINALVAKAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGGL 370
Query: 137 DDAGNKLPWLVYVSREKRPGHDHHKKAGALNALLRTSAILSNAPF 3
D GN+LP LVYVSREKRPG++HHKKAGA+NAL+R SA+L+NAP+
Sbjct: 371 DVEGNELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPY 505
Score = 171 bits (368), Expect = 3e-042
Identities = 90/145 (62%), Positives = 95/145 (65%)
Frame = +1 / -2
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GAL AE R+NAF APAFL* PG FS ET*TN+GS FP++S P T IP S
Sbjct: 501 GALVSTAETRTNAFIAPAFL*WL*PGRFSLET*TNRGSSFPSTSRPPL*PRKT*IIPG*S 322
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
RTLFP G PS HP SGT LA + LNSSYSLFIA S T G T S R*SIF
Sbjct: 321 RTLFPGQGVPSCMVHPSSGTFWALATKALIRILNSSYSLFIALLSLTKFGTTLSFR*SIF 142
Query: 367 *AKYHSGARGSILCFLQKGTHFRAN 441
KYHSGARGSIL FLQKGTHF AN
Sbjct: 141 C*KYHSGARGSILYFLQKGTHFFAN 67
Score = 104 bits (221), Expect = 5e-022
Identities = 47/130 (36%), Positives = 71/130 (54%)
Frame = +3 / -1
Query: 39 QCIQGTSFFMMIMSRPFLT*NIDQPRQXXXXXXXXXXXXXXXXXXXGMVSNIISMPWSSF 218
QC+ TS +M+++ PF +*NI+Q RQ ++++I+S P S+
Sbjct: 469 QCVHSTSLLVMVIAWPFFS*NINQSRQLISFHIKATTLTKEDLNHSRVITDIVSWPGSTI 290
Query: 219 W*GPSSLGNFA*ISSYCVYVNLKFFVFSLHCTSFSNKLWVNLFS*IVNFLSKIPFRSPRL 398
GPS L NF S+ + +L+F + SLHC+ NK+W +L +V L K+P S RL
Sbjct: 289 LHGPSFLRNFLGFSNQSIDSDLEFLILSLHCSPVPNKVWYHLVFQVVYLLLKVPLWSTRL 110
Query: 399 DFVFLTEGNP 428
+ V LTE NP
Sbjct: 109 NTVLLTERNP 80
>gb|BU999035.1|BU999035 HI12P13r HI Hordeum vulgare subsp. vulgare cDNA clone HI12P13
5-PRIME, mRNA sequence
Length = 656
Score = 297 bits (644), Expect = 2e-080
Identities = 116/173 (67%), Positives = 139/173 (80%)
Frame = -1 / +1
Query: 521 PVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFCKKHKIEPRAPEWYFAQKIDYLREK 342
P +V CYVSDDGAAMLTF+AL ET FARKWVPFCKK+ IEPRAPEWYFAQKID+L++K
Sbjct: 25 PC*QVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDFLKDK 204
Query: 341 VHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEGGWSLPEGAPWHGNNVRDHAGMVQV 162
V FV++RRAMKREYEEFKV +N++ A + KVPE GW + +G PW GNN RDH GM+QV
Sbjct: 205 VQTSFVKDRRAMKREYEEFKVRVNSLVAKAEKVPEEGWIMQDGTPWPGNNTRDHPGMLQV 384
Query: 161 ITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAGALNALLRTSAILSNAPF 3
G+ +D GN+LP LVYVSREKRPG HHKKAGA+NAL+R SA+L+N +
Sbjct: 385 FLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGQY 543
Score = 176 bits (379), Expect = 9e-044
Identities = 89/170 (52%), Positives = 100/170 (58%)
Frame = +1 / -1
Query: 13 LERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWSRT 192
L R A+ R++AF APAFL PG FSR+T*T +GS P+ S P T +IP WS
Sbjct: 533 LVRTADTRTSAFMAPAFLWCWNPGRFSRDT*TKRGSSLPSVSRPPL*PRKT*SIPGWSLV 354
Query: 193 LFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF*A 372
LFP G PS HP SGT LA + TLNSSYSLF+ARRS TN *T S + SIF*A
Sbjct: 353 LFPGQGVPSCMIHPSSGTFSALATRLLTRTLNSSYSLFMARRSLTNEV*TLSFKKSIF*A 174
Query: 373 KYHSGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG 522
KYHSGA GS+L FLQ GTHF AN DT*Q T G
Sbjct: 173 KYHSGALGSMLYFLQNGTHFLANSEVSASASKVSIAAPSSDT*QDTCQQG 24
>gb|AW982533.3|AW982533 HVSMEg0003I09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003I09f, mRNA sequence
Length = 854
Score = 284 bits (615), Expect = 2e-076
Identities = 114/180 (63%), Positives = 138/180 (76%)
Frame = -1 / +3
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPP++ A TVLSILAV YPVDKV CYVSDDGA+MLTF+AL ET FARKWVPF
Sbjct: 30 TVDPLKEPPIVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFDALAETSEFARKWVPFV 209
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEG 234
KK+ IEPRAPEWYF+QKIDYL++KV P FV++RRAMKREYEEFK+ IN + + + KVPE
Sbjct: 210 KKYDIEPRAPEWYFSQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVSKALKVPEE 389
Query: 233 GWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAG 54
W + +G PW GNN +DH GM+QV G+ +D GN+LP L YVSRE + K+ G
Sbjct: 390 RWIMQDGTPWPGNNTKDHPGMIQVFLGHQGGLDTEGNELPPLGYVSRENVLDSNTPKRLG 569
Score = 160 bits (343), Expect = 8e-039
Identities = 83/157 (52%), Positives = 90/157 (57%)
Frame = +1 / -2
Query: 88 FSRET*TNQGSLFPASSMTQSLPVMTWTIPAWSRTLFPCHGAPSGRDHPPSGTLRELAAT 267
FSR+T* N GS P+ S P T IP S LFP HG PS H SGT L
Sbjct: 535 FSRDT*PNGGSSLPSVSRPPWCPRKT*IIPG*SLVLFPGHGVPSCMIHLSSGTFNALETR 356
Query: 268 VFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF*AKYHSGARGSILCFLQKGTHFRANRH 447
F+ LNSSYSLF+ARRS TN G T S +*SIF* KYHSGA GS+ FL GTHF AN
Sbjct: 355 PFILILNSSYSLFMARRSLTNEGWTLSFK*SIF*EKYHSGALGSMSYFLTNGTHFLANSE 176
Query: 448 XXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDKTVXA 558
DT*Q+TLSTG* TA MD TV A
Sbjct: 175 VSANASKVSIDAPSSDT*QETLSTG*STARMDSTVLA 65
>gb|BI956967.1|BI956967 HVSMEn0006I08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0006I08f, mRNA sequence
Length = 898
Score = 254 bits (550), Expect(3) = 1e-073
Identities = 98/144 (68%), Positives = 117/144 (81%)
Frame = -1 / +2
Query: 581 MXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFCKKHK 402
+ EPP++ A TVLSILA YPVDKV CYVSDDGA+MLTF+AL ET FARKWVPF KK+
Sbjct: 2 LKEPPIVTANTVLSILAGDYPVDKVSCYVSDDGASMLTFDALAETSEFARKWVPFVKKYD 181
Query: 401 IEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEGGWSL 222
IEPRAPEWYF+QKIDYL++KV P FV++RRAMKREYEEFK+ IN + + + KVPE GW +
Sbjct: 182 IEPRAPEWYFSQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVSKALKVPEEGWIM 361
Query: 221 PEGAPWHGNNVRDHAGMVQVITGN 150
+G PW GNN RDH GM+QV G+
Sbjct: 362 QDGTPWPGNNTRDHPGMIQVFLGH 433
Score = 144 bits (310), Expect(2) = 2e-035
Identities = 73/135 (54%), Positives = 78/135 (57%)
Frame = +1 / -2
Query: 154 PVMTWTIPAWSRTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNS 333
P T IP S LFP HG PS HP SGT L F+ LNSSYSLF+ARRS TN
Sbjct: 429 PRKT*IIPG*SLVLFPGHGVPSCMIHPSSGTFNALETRPFILILNSSYSLFMARRSLTNE 250
Query: 334 G*TFSLR*SIF*AKYHSGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTL 513
G T S +*SIF* KYHSGA GS+ FL GTHF AN DT*Q+TL
Sbjct: 249 GWTLSFK*SIF*EKYHSGALGSMSYFLTNGTHFLANSEVSANASKVSIDAPSSDT*QETL 70
Query: 514 STG*XTASMDKTVXA 558
STG* A MD TV A
Sbjct: 69 STG*SPARMDSTVLA 25
Score = 32.7 bits (65), Expect(3) = 1e-073
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -1 / +3
Query: 140 MDDAGNKLPWLVYVSREK 87
+D GN+LP LVYVSREK
Sbjct: 444 LDTKGNELPRLVYVSREK 497
Score = 27.6 bits (54), Expect(3) = 1e-073
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1 / +1
Query: 92 EKRPGHDHHKKAGALN 45
+K PG HKKAGA+N
Sbjct: 493 KKPPGFQPHKKAGAMN 540
Score = 23.5 bits (45), Expect(2) = 2e-035
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1 / -1
Query: 88 FSRET*TNQGSLFPASS 138
FSR+T*T +GS P S
Sbjct: 496 FSRDT*TKRGSSLPLVS 446
>gb|CA017986.1|CA017986 HV07A23r HV Hordeum vulgare subsp. vulgare cDNA clone HV07A23
5-PRIME, mRNA sequence
Length = 569
Score = 220 bits (474), Expect(2) = 1e-065
Identities = 86/139 (61%), Positives = 107/139 (76%)
Frame = -1 / +3
Query: 419 FCKKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVP 240
F + IEPRAPEWYF QKIDYL++K P FVR+RRAMKREYEEFK+ + A ++KVP
Sbjct: 78 FL*EDSIEPRAPEWYFQQKIDYLKDKXVPNFVRDRRAMKREYEEFKIRXXALVAKAQKVP 257
Query: 239 EGGWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKK 60
E GW++ +G GNNVRDH GM+QV G +D GN+LP LVYVSREKRPG++HHKK
Sbjct: 258 EEGWTMQDGTXGPGNNVRDHPGMIQVFLGQSGGLDXXGNELPRLVYVSREKRPGYNHHKK 437
Query: 59 AGALNALLRTSAILSNAPF 3
GA+NAL+R SA+L+NAP+
Sbjct: 438 XGAMNALVRVSAVLTNAPY 494
Score = 139 bits (299), Expect = 9e-033
Identities = 78/138 (56%), Positives = 82/138 (59%)
Frame = +1 / -2
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GAL AE R+NAF AP FL* PG FS ET*TN+GS FP S P T IP S
Sbjct: 490 GALVSTAETRTNAFIAPXFL*WL*PGRFSLET*TNRGSSFPXXSRPPL*PRKT*IIPG*S 311
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
RTLFP PS HP SGT LA + LNSSYSLFIA S T G S R*SIF
Sbjct: 310 RTLFPGPXVPSCMVHPSSGTFWALATKAXIRILNSSYSLFIALLSLTKFGTXLSFR*SIF 131
Query: 367 *AKYHSGARGSILCFLQK 420
KYHSGARGSIL +K
Sbjct: 130 C*KYHSGARGSILSSYRK 77
Score = 49.6 bits (102), Expect(2) = 1e-065
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -1 / +2
Query: 497 VSDDGAAMLTFEALTETCLFARKWV 423
VSDDGAAMLTFE L+ET FA+KWV
Sbjct: 2 VSDDGAAMLTFEGLSETSEFAKKWV 76
>gb|BI958001.1|BI958001 HVSMEn0012N14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0012N14f, mRNA sequence
Length = 881
Score = 175 bits (377), Expect(2) = 4e-064
Identities = 69/106 (65%), Positives = 83/106 (78%)
Frame = -1 / +1
Query: 320 ERRAMKREYEEFKVHINTVAANSRKVPEGGWSLPEGAPWHGNNVRDHAGMVQVITGNDCV 141
ERRAMKREYEEFKV IN + + ++KVP+ GW + +G PW GNN RDH GM+QV G+
Sbjct: 172 ERRAMKREYEEFKVRINALVSKAQKVPDEGWIMKDGTPWPGNNTRDHPGMIQVFLGHSGG 351
Query: 140 MDDAGNKLPWLVYVSREKRPGHDHHKKAGALNALLRTSAILSNAPF 3
+D GN+LP LVYVSREKRPG HHKKAGA+NAL+R SA L+NAPF
Sbjct: 352 LDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAGLTNAPF 489
Score = 122 bits (260), Expect(2) = 2e-036
Identities = 59/106 (55%), Positives = 65/106 (61%)
Frame = +1 / -1
Query: 4 KGALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAW 183
KGAL AE R AF APAFL PG FSRET*T +GS P+ S P TW +P W
Sbjct: 488 KGALVSPAETRMRAFMAPAFLWCWKPGRFSRET*TRRGSSLPSVSRPPLWPRKTWIMPGW 309
Query: 184 SRTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRS 321
SR L P HG PS HP SGT L + + TLNSSYSLF+ARRS
Sbjct: 308 SRVLLPGHGVPSFMIHPSSGTFCALDTSALIRTLNSSYSLFMARRS 171
Score = 89.0 bits (188), Expect(2) = 4e-064
Identities = 33/49 (67%), Positives = 42/49 (85%)
Frame = -1 / +2
Query: 488 DGAAMLTFEALTETCLFARKWVPFCKKHKIEPRAPEWYFAQKIDYLREK 342
+G ML+FE+L+ET FARKWVPFCKK IEPRAPE+YF++K DYL++K
Sbjct: 8 EGGGMLSFESLSETAEFARKWVPFCKKFNIEPRAPEFYFSRKGDYLKDK 154
Score = 50.1 bits (103), Expect(2) = 2e-036
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +1 / -3
Query: 346 SLR*SIF*AKYHSGARGSILCFLQKGTHFRAN 441
SLR*S K +SGARGS+L FLQKGTHFRAN
Sbjct: 150 SLR*SPLREK*NSGARGSMLNFLQKGTHFRAN 55
>gb|CB882157.1|CB882157 HL01A17w HL Hordeum vulgare subsp. vulgare cDNA clone HL01A17
3-PRIME, mRNA sequence
Length = 652
Score = 240 bits (518), Expect = 6e-063
Identities = 91/140 (65%), Positives = 112/140 (80%)
Frame = -1 / +2
Query: 422 PFCKKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKV 243
PFCKKH IEPRAPE+YF QKIDYL++K+ P FV+ERRAMKREYEEFK+ IN + A ++KV
Sbjct: 56 PFCKKHNIEPRAPEFYFQQKIDYLKDKIQPSFVKERRAMKREYEEFKIRINALVAKAQKV 235
Query: 242 PEGGWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHK 63
PE GW++ +G W GNN RDH GM+QV G+ +D GN+LP LVYVSREKRPG HHK
Sbjct: 236 PEEGWTMADGTAWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHK 415
Query: 62 KAGALNALLRTSAILSNAPF 3
KAGA+NAL+R SA+L+N +
Sbjct: 416 KAGAMNALIRVSAVLTNGAY 475
Score = 138 bits (297), Expect = 2e-032
Identities = 72/133 (54%), Positives = 83/133 (62%)
Frame = +1 / -2
Query: 25 AEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWSRTLFPC 204
A+ R +AF APAFL* PGLFSRET T++G+ P+ S P T +P WS LFP
Sbjct: 453 ADTRISAFIAPAFL*CWKPGLFSRETYTSRGNSLPSVSRPPLCPKNT*IMPGWSLGLFPG 274
Query: 205 HGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF*AKYHS 384
PS HP SGT LA + + LNSSYSLFIAR S T G* S R*SIF K +S
Sbjct: 273 QAVPSAMVHPSSGTFWALATSALIRILNSSYSLFIARLSFTKEG*ILSFR*SIFC*K*NS 94
Query: 385 GARGSILCFLQKG 423
GA GS+LCFLQ G
Sbjct: 93 GALGSMLCFLQNG 55
>gb|BF260649.2|BF260649 HVSMEf0022J05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022J05f, mRNA sequence
Length = 804
Score = 237 bits (511), Expect = 5e-062
Identities = 90/139 (64%), Positives = 111/139 (79%)
Frame = -1 / +1
Query: 419 FCKKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVP 240
FCKKH IEPRAPE+YF QKIDYL++K+ P FV+ERRAMKREYEEFK+ IN + A ++KVP
Sbjct: 1 FCKKHNIEPRAPEFYFQQKIDYLKDKIQPSFVKERRAMKREYEEFKIRINALVAKAQKVP 180
Query: 239 EGGWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKK 60
E GW++ +G W GNN RDH GM+QV G+ +D GN+LP LVYVSREKRPG HHKK
Sbjct: 181 EEGWTMADGTAWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKK 360
Query: 59 AGALNALLRTSAILSNAPF 3
AGA+NAL+R SA+L+N +
Sbjct: 361 AGAMNALIRVSAVLTNGAY 417
Score = 136 bits (291), Expect = 1e-031
Identities = 71/131 (54%), Positives = 82/131 (62%)
Frame = +1 / -2
Query: 25 AEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWSRTLFPC 204
A+ R +AF APAFL* PGLFSRET T++G+ P+ S P T +P WS LFP
Sbjct: 395 ADTRISAFIAPAFL*CWKPGLFSRETYTSRGNSLPSVSRPPLCPKNT*IMPGWSLGLFPG 216
Query: 205 HGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF*AKYHS 384
PS HP SGT LA + + LNSSYSLFIAR S T G* S R*SIF K +S
Sbjct: 215 QAVPSAMVHPSSGTFWALATSALIRILNSSYSLFIARLSFTKEG*ILSFR*SIFC*K*NS 36
Query: 385 GARGSILCFLQ 417
GA GS+LCFLQ
Sbjct: 35 GALGSMLCFLQ 3
>gb|BU994416.1|BU994416 HM07A02r HM Hordeum vulgare subsp. vulgare cDNA clone HM07A02
5-PRIME, mRNA sequence
Length = 619
Score = 219 bits (472), Expect = 1e-056
Identities = 84/127 (66%), Positives = 104/127 (81%)
Frame = -1 / +3
Query: 383 EWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEGGWSLPEGAPW 204
EWY QKIDYL++KV P FVR+RRAMKREYEEFK+ IN + A ++KVPE GW++ +G PW
Sbjct: 15 EWYL*QKIDYLKDKVVPNFVRDRRAMKREYEEFKIRINALVAKAQKVPEEGWTMQDGTPW 194
Query: 203 HGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAGALNALLRTSA 24
GNNVRDH GM+QV G +D GN+LP LVYVSREKRPG++HHKKAGA+NAL+R SA
Sbjct: 195 PGNNVRDHPGMIQVFLGQSGGLDVEGNELPRLVYVSREKRPGYNHHKKAGAMNALVRVSA 374
Query: 23 ILSNAPF 3
+L+NAP+
Sbjct: 375 VLTNAPY 395
Score = 132 bits (282), Expect = 2e-030
Identities = 72/126 (57%), Positives = 78/126 (61%)
Frame = +1 / -1
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GAL AE R+NAF APAFL* PG FS ET*TN+GS FP++S P T IP S
Sbjct: 391 GALVSTAETRTNAFIAPAFL*WL*PGRFSLET*TNRGSSFPSTSRPPL*PRKT*IIPG*S 212
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
RTLFP G PS HP SGT LA + LNSSYSLFIA S T G T S R*SIF
Sbjct: 211 RTLFPGQGVPSCMVHPSSGTFWALATKALIRILNSSYSLFIALLSLTKFGTTLSFR*SIF 32
Query: 367 *AKYHS 384
+YHS
Sbjct: 31 C*RYHS 14
>gb|CA024787.1|CA024787 HZ50E24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50E24
5-PRIME, mRNA sequence
Length = 365
Score = 215 bits (465), Expect = 1e-055
Identities = 85/112 (75%), Positives = 96/112 (85%)
Frame = -1 / +2
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP EPPL+ A T+LSILAV YPVDK+ CYVSDDGAAMLTFE L+ET FA+KWVPFC
Sbjct: 26 TVDPAKEPPLVTANTILSILAVDYPVDKLSCYVSDDGAAMLTFEGLSETSEFAKKWVPFC 205
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAA 258
KK+ IEPRAPEWYF QKIDYL++KV P FVR+RRAMKREYEEFK+ IN + A
Sbjct: 206 KKYSIEPRAPEWYFQQKIDYLKDKVVPNFVRDRRAMKREYEEFKIRINALVA 361
Score = 107 bits (228), Expect = 6e-023
Identities = 56/101 (55%), Positives = 62/101 (61%)
Frame = +1 / -3
Query: 256 LAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF*AKYHSGARGSILCFLQKGTHFR 435
LA + LNSSYSLFIA S T G T S R*SIF KYHSGARGSIL FLQKGTHF
Sbjct: 363 LATKALIRILNSSYSLFIALLSLTKFGTTLSFR*SIFC*KYHSGARGSILYFLQKGTHFF 184
Query: 436 ANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDKTVXA 558
AN +T*Q++LSTG* TA +D+ V A
Sbjct: 183 ANSDVSDNPSNVSMAAPSSET*QESLSTG*STARIDRIVFA 61
>gb|BI956417.1|BI956417 HVSMEn0003E01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0003E01f, mRNA sequence
Length = 457
Score = 198 bits (427), Expect = 2e-050
Identities = 79/149 (53%), Positives = 102/149 (68%)
Frame = -1 / +3
Query: 551 TVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFCKKHKIEPRAPEWYF 372
++L ILA YP + CY+ D A ML L++T F R+WVPFCKK I+PRAP +YF
Sbjct: 9 SMLFILA*VYPDARKMCYICGDRAGMLCLNTLSDTGEFERRWVPFCKKFSIKPRAP*FYF 188
Query: 371 AQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEGGWSLPEGAPWHGNN 192
+QKIDYL++KVHP FV+ERRAMKREY+EFK IN + PE GW + +G PW GNN
Sbjct: 189 SQKIDYLKDKVHPTFVKERRAMKREYDEFKERINGLVVMGENKPEEGWVMHDGTPWPGNN 368
Query: 191 VRDHAGMVQVITGNDCVMDDAGNKLPWLV 105
+DH GM+QV G+ +D G++LP LV
Sbjct: 369 TKDHPGMIQVYLGSQGALDVEGHELPRLV 455
Score = 121 bits (258), Expect = 4e-027
Identities = 59/112 (52%), Positives = 71/112 (63%)
Frame = +1 / -1
Query: 106 TNQGSLFPASSMTQSLPVMTWTIPAWSRTLFPCHGAPSGRDHPPSGTLRELAATVFM*TL 285
TN+GS +P++S LP T IP WS LFP HG PS HP SG + + + +L
Sbjct: 454 TNRGSSWPSTSSAPWLPKYTCIIPGWSLVLFPGHGVPSCITHPSSGLFSPMTTSPLIRSL 275
Query: 286 NSSYSLFIARRSRTNSG*TFSLR*SIF*AKYHSGARGSILCFLQKGTHFRAN 441
NSSYS F+ARRS TN G T SLR*SIF K + GARG + FLQKGT R+N
Sbjct: 274 NSSYSRFMARRSLTNVGCTLSLR*SIFCEK*NYGARGLMENFLQKGTQRRSN 119
>gb|BI957869.1|BI957869 HVSMEn0011N08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011N08f, mRNA sequence
Length = 1250
Score = 155 bits (334), Expect = 1e-037
Identities = 67/136 (49%), Positives = 84/136 (61%)
Frame = -1 / +2
Query: 410 KHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEGG 231
K IEPRAPE+YF+QKIDYL++KV P FV+ERRAMKREY EFKV IN + A + PE G
Sbjct: 2 KFAIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREY*EFKVRINGLVAKADNKPEEG 181
Query: 230 WSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAGA 51
W + +G PW NN DH M+ V G +D G+ L L Y+ + H+KA A
Sbjct: 182 WVMQDGTPWTWNNTTDHPWMIHVYLGMQGALDV*GHDLARLEYIEHIEHAERSLHRKAVA 361
Query: 50 LNALLRTSAILSNAPF 3
+NALLR + PF
Sbjct: 362 INALLRFKGGMDTIPF 409
>gb|BI948539.1|BI948539 HVSMEl0010A07f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0010A07f, mRNA sequence
Length = 878
Score = 155 bits (332), Expect = 3e-037
Identities = 60/97 (61%), Positives = 73/97 (75%)
Frame = -1 / +2
Query: 293 EEFKVHINTVAANSRKVPEGGWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLP 114
EEFKV IN + A ++K PE GW + +G PW GNN RDH GM+QV G D GN+LP
Sbjct: 2 EEFKVRINALVAKAQKTPEEGWVMQDGTPWPGNNSRDHPGMIQVFLGETGARDYDGNELP 181
Query: 113 WLVYVSREKRPGHDHHKKAGALNALLRTSAILSNAPF 3
LVYVSREKRPG+ HHKKAGA+NAL+R SA+L+NAP+
Sbjct: 182 RLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPY 292
>gb|AV836682.1|AV836682 AV836682 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd24c20, mRNA
sequence
Length = 505
Score = 154 bits (331), Expect = 4e-037
Identities = 59/99 (59%), Positives = 74/99 (74%)
Frame = -1 / +1
Query: 299 EYEEFKVHINTVAANSRKVPEGGWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNK 120
EYEEFK+ IN + + + KVPE GW + +G PW GNN RDH GM+QV G+ +D GN+
Sbjct: 1 EYEEFKIRINGLVSKALKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNE 180
Query: 119 LPWLVYVSREKRPGHDHHKKAGALNALLRTSAILSNAPF 3
LP LVYVSREKRPG HHKKAGA+NAL+R SA+L+N +
Sbjct: 181 LPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGQY 297
>gb|BF624748.2|BF624748 HVSMEa0017K05f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017K05f, mRNA sequence
Length = 750
Score = 133 bits (286), Expect = 6e-031
Identities = 51/82 (62%), Positives = 62/82 (75%)
Frame = -1 / +1
Query: 248 KVPEGGWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDH 69
KVPE GW + +G PW GNN RDH GM+QV G+ +D GN+LP LVYVSREKRPG H
Sbjct: 7 KVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQH 186
Query: 68 HKKAGALNALLRTSAILSNAPF 3
HKKAGA+NAL+R SA+L+N +
Sbjct: 187 HKKAGAMNALVRVSAVLTNGQY 252
>gb|CK124710.1|CK124710 BES1824110c01 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010C0110 5-PRIME, mRNA sequence
Length = 710
Score = 133 bits (286), Expect = 6e-031
Identities = 51/82 (62%), Positives = 62/82 (75%)
Frame = -1 / +1
Query: 248 KVPEGGWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDH 69
KVPE GW + +G PW GNN RDH GM+QV G+ +D GN+LP LVYVSREKRPG H
Sbjct: 10 KVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQH 189
Query: 68 HKKAGALNALLRTSAILSNAPF 3
HKKAGA+NAL+R SA+L+N +
Sbjct: 190 HKKAGAMNALVRVSAVLTNGQY 255
>gb|AV923682.1|AV923682 AV923682 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1a04 5', mRNA sequence
Length = 476
Score = 114 bits (244), Expect(2) = 2e-026
Identities = 45/66 (68%), Positives = 55/66 (83%)
Frame = -1 / +1
Query: 200 GNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAGALNALLRTSAI 21
GNNVRDH GM+QV G +D GN+LP LVYVSREKRPG++HHKKAGA+NAL+R SA+
Sbjct: 34 GNNVRDHPGMIQVFLGQSGGLDVEGNELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAV 213
Query: 20 LSNAPF 3
L+NAP+
Sbjct: 214 LTNAPY 231
Score = 23.5 bits (45), Expect(2) = 2e-026
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -1 / +2
Query: 233 GWSLPEGAPW 204
GW++ +G PW
Sbjct: 2 GWTMQDGTPW 31
>gb|CV058095.1|CV058095 BNEL34c4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL34c4 5' similar to Oryza sativa,
mRNA sequence
Length = 623
Score = 69.8 bits (146), Expect(2) = 4e-025
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = -1 / +2
Query: 500 YVSDDGAAMLTFEALTETCLFARKWVPFCKKHKIEPRAPEWYFAQKI 360
Y SDDG +++ +E L T FA WVPFC+KH +EPRAPE YF K+
Sbjct: 23 YFSDDGGSLVHYEGLLLTAEFAASWVPFCRKHCVEPRAPESYFWAKM 163
Score = 65.7 bits (137), Expect(2) = 4e-025
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = -1 / +3
Query: 122 KLPWLVYVSREKRPGHDHHKKAGALNALLRTSAILS 15
+LP LVY++REKRPG+DH KKAGA+N LR SA+LS
Sbjct: 516 RLPMLVYIAREKRPGYDHQKKAGAMNVQLRVSALLS 623
>gb|CV056841.1|CV056841 BNEL21b6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL21b6 5' similar to Oryza sativa,
mRNA sequence
Length = 617
Score = 69.8 bits (146), Expect(2) = 5e-024
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = -1 / +2
Query: 500 YVSDDGAAMLTFEALTETCLFARKWVPFCKKHKIEPRAPEWYFAQKI 360
Y SDDG +++ +E L T FA WVPFC+KH +EPRAPE YF K+
Sbjct: 23 YFSDDGGSLVHYEGLLLTAEFAASWVPFCRKHCVEPRAPESYFWAKM 163
Score = 62.0 bits (129), Expect(2) = 5e-024
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = -1 / +2
Query: 122 KLPWLVYVSREKRPGHDHHKKAGALNALLRTSAI 21
+LP LVY++REKRPG+DH KKAGA+N LR SA+
Sbjct: 515 RLPMLVYIAREKRPGYDHQKKAGAMNVQLRVSAL 616
>gb|BF255897.2|BF255897 HVSMEf0008C05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0008C05f, mRNA sequence
Length = 865
Score = 68.9 bits (144), Expect(3) = 9e-024
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = -1 / -2
Query: 122 KLPWLVYVSREKRPGHDHHKKAGALNALLRTSAI 21
+LP LVYVSREKRPGHDH KKAGA+NAL R SA+
Sbjct: 102 RLPMLVYVSREKRPGHDHQKKAGAMNALTRASAL 1
Score = 43.2 bits (88), Expect(3) = 9e-024
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1 / -2
Query: 494 SDDGAAMLTFEALTETCLFARKWVPFCKKHKIEPRAPEWYFAQKIDYL 351
+ D + T+EAL E+ FA WVPFC+K P E + + Y+
Sbjct: 579 TSDSGMLFTYEALAESSKFATLWVPFCRKPGSSPGVGELFELKSHPYM 436
Score = 37.7 bits (76), Expect(3) = 9e-024
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = -1 / -2
Query: 344 KVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEG 234
+ EFV +RR +++EY+EFK IN++ + ++ +G
Sbjct: 432 RAQDEFVNDRRRVRKEYDEFKARINSMEHDIKQRNDG 322
>gb|CV060551.1|CV060551 BNEL59d2 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL59d2 5' similar to Oryza sativa,
mRNA sequence
Length = 611
Score = 69.8 bits (146), Expect(2) = 3e-023
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = -1 / +2
Query: 500 YVSDDGAAMLTFEALTETCLFARKWVPFCKKHKIEPRAPEWYFAQKI 360
Y SDDG +++ +E L T FA WVPFC+KH +EPRAPE YF K+
Sbjct: 23 YFSDDGGSLVHYEGLLLTAEFAASWVPFCRKHCVEPRAPESYFWAKM 163
Score = 59.3 bits (123), Expect(2) = 3e-023
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = -1 / +2
Query: 122 KLPWLVYVSREKRPGHDHHKKAGALNALLRTS 27
+LP LVY++REKRPG+DH KKAGA+N LR S
Sbjct: 515 RLPMLVYIAREKRPGYDHQKKAGAMNVQLRVS 610
>gb|BG300831.1|BG300831 HVSMEb0018J05f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018J05f, mRNA sequence
Length = 605
Score = 106 bits (226), Expect = 1e-022
Identities = 39/76 (51%), Positives = 54/76 (71%)
Frame = -1 / +1
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
T DP EPP+++ TVLS++A YP +K+ Y+SDD + +TF AL E FA+ W+PFC
Sbjct: 334 TADPDLEPPMLVISTVLSVMAYDYPPEKLNIYLSDDAGSAITFYALHEASEFAKHWIPFC 513
Query: 413 KKHKIEPRAPEWYFAQ 366
K +K+EPR+P YFAQ
Sbjct: 514 KNYKVEPRSPAAYFAQ 561
>gb|CA013673.1|CA013673 HT09C18r HT Hordeum vulgare subsp. vulgare cDNA clone HT09C18
5-PRIME, mRNA sequence
Length = 409
Score = 105 bits (225), Expect = 2e-022
Identities = 37/76 (48%), Positives = 54/76 (71%)
Frame = -1 / +3
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
T DP EPP ++ T+LS++A YP +K+ Y+SDDG ++LTF + E L A+ W+PFC
Sbjct: 96 TADPYSEPPSLVVSTILSLMAYNYPPEKLSVYLSDDGGSILTFYGMREASLIAKHWLPFC 275
Query: 413 KKHKIEPRAPEWYFAQ 366
K++ IEPR+P YF+Q
Sbjct: 276 KRYNIEPRSPAAYFSQ 323
>gb|CV053799.1|CV053799 BNEL103c9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL103c9 5' similar to Oryza sativa,
mRNA sequence
Length = 710
Score = 104 bits (222), Expect = 4e-022
Identities = 42/78 (53%), Positives = 52/78 (66%)
Frame = -1 / +2
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EP L ++LSILA YPV K Y SDDG +++ +E L T FA WVPFC
Sbjct: 122 TVDPVDEPMLYTMNSILSILATDYPVQKYATYFSDDGGSLVHYEGLLLTAEFAASWVPFC 301
Query: 413 KKHKIEPRAPEWYFAQKI 360
+KH +EPRAPE YF K+
Sbjct: 302 RKHCVEPRAPESYFWAKM 355
>gb|CV054673.1|CV054673 BNEL112a7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112a7 5' similar to Oryza sativa,
mRNA sequence
Length = 705
Score = 104 bits (222), Expect = 4e-022
Identities = 42/78 (53%), Positives = 52/78 (66%)
Frame = -1 / +2
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EP L ++LSILA YPV K Y SDDG +++ +E L T FA WVPFC
Sbjct: 122 TVDPVDEPMLYTMNSILSILATDYPVQKYATYFSDDGGSLVHYEGLLLTAEFAASWVPFC 301
Query: 413 KKHKIEPRAPEWYFAQKI 360
+KH +EPRAPE YF K+
Sbjct: 302 RKHCVEPRAPESYFWAKM 355
>gb|CV063264.1|CV063264 BNEL88d6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL88d6 5' similar to putative
cellulose synthase-like protein OsCslF1, mRNA sequence
Length = 846
Score = 104 bits (222), Expect = 4e-022
Identities = 42/78 (53%), Positives = 52/78 (66%)
Frame = -1 / +2
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EP L ++LSILA YPV K Y SDDG +++ +E L T FA WVPFC
Sbjct: 131 TVDPVDEPMLYTMNSILSILATDYPVQKYATYFSDDGGSLVHYEGLLLTAEFAASWVPFC 310
Query: 413 KKHKIEPRAPEWYFAQKI 360
+KH +EPRAPE YF K+
Sbjct: 311 RKHCVEPRAPESYFWAKM 364
>gb|CV063381.1|CV063381 BNEL89f8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL89f8 5' similar to Oryza sativa,
mRNA sequence
Length = 707
Score = 104 bits (222), Expect = 4e-022
Identities = 42/78 (53%), Positives = 52/78 (66%)
Frame = -1 / +2
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EP L ++LSILA YPV K Y SDDG +++ +E L T FA WVPFC
Sbjct: 122 TVDPVDEPMLYTMNSILSILATDYPVQKYATYFSDDGGSLVHYEGLLLTAEFAASWVPFC 301
Query: 413 KKHKIEPRAPEWYFAQKI 360
+KH +EPRAPE YF K+
Sbjct: 302 RKHCVEPRAPESYFWAKM 355
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 269,764,695
Number of Sequences: 312970
Number of extensions: 4137889
Number of successful extensions: 50336
Number of sequences better than 1.0e-020: 41
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6192839514
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)