TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK30g08.yg.2.1
(164 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE216452.2|BE216452 HV_CEb0010I13f Hordeum vulgare seedl... 99 3e-021
gb|BM816326.1|BM816326 HB02F03_T3.ab1 HB Hordeum vulgare su... 99 3e-021
gb|BM816327.1|BM816327 HB106A04_SK.ab1 HB Hordeum vulgare s... 99 3e-021
gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. v... 99 3e-021
gb|BU975384.1|BU975384 HB31F04r BC Hordeum vulgare subsp. v... 99 3e-021
gb|CA015170.1|CA015170 HT13H22r HT Hordeum vulgare subsp. v... 99 3e-021
gb|CB882476.1|CB882476 HL01P12w HL Hordeum vulgare subsp. v... 99 3e-021
gb|BM816328.1|BM816328 HC108D12_SK.ab1 HC Hordeum vulgare s... 97 9e-021
>gb|BE216452.2|BE216452 HV_CEb0010I13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010I13f, mRNA sequence
Length = 697
Score = 98.8 bits (210), Expect = 3e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 554 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 697
>gb|BM816326.1|BM816326 HB02F03_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB02F03_T3.ab1 similar to UDP-glucose 4-epimerase,Aldose
1-epimerase,, mRNA sequence
Length = 815
Score = 98.8 bits (210), Expect = 3e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +3
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 582 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 725
>gb|BM816327.1|BM816327 HB106A04_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB106A04_SK.ab1 similar to UDP-glucose
4-epimerase,Aldose 1-epimerase,, mRNA sequence
Length = 883
Score = 98.8 bits (210), Expect = 3e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 596 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 739
>gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. vulgare cDNA clone HB19L11
5-PRIME, mRNA sequence
Length = 569
Score = 98.8 bits (210), Expect = 3e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +1
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 79 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 222
>gb|BU975384.1|BU975384 HB31F04r BC Hordeum vulgare subsp. vulgare cDNA clone HB31F04
5-PRIME, mRNA sequence
Length = 501
Score = 98.8 bits (210), Expect = 3e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +1
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 142 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 285
>gb|CA015170.1|CA015170 HT13H22r HT Hordeum vulgare subsp. vulgare cDNA clone HT13H22
5-PRIME, mRNA sequence
Length = 640
Score = 98.8 bits (210), Expect = 3e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +3
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 462 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 605
>gb|CB882476.1|CB882476 HL01P12w HL Hordeum vulgare subsp. vulgare cDNA clone HL01P12
3-PRIME, mRNA sequence
Length = 628
Score = 98.8 bits (210), Expect = 3e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 467 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 610
>gb|BM816328.1|BM816328 HC108D12_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108D12_SK.ab1 similar to UDP-glucose
4-epimerase,Aldose 1-epimerase,, mRNA sequence
Length = 860
Score = 97.0 bits (206), Expect = 9e-021
Identities = 35/48 (72%), Positives = 42/48 (87%)
Frame = +1 / +3
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+W+IILLRY
Sbjct: 582 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWEIILLRY 725
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.317 0.142 0.459
Matrix: BLOSUM62
Number of Hits to DB: 76,718,515
Number of Sequences: 312970
Number of extensions: 729003
Number of successful extensions: 109063
Number of sequences better than 1.0e-020: 13
length of database: 58,378,179
effective HSP length: 39
effective length of database: 46,172,349
effective search space used: 692585235
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)