TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCI2h07.yg.2.1
(286 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA li... 171 7e-043
gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. v... 171 7e-043
gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. v... 171 7e-043
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 171 7e-043
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 171 7e-043
gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green... 164 1e-040
gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike... 157 1e-038
gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. v... 80 9e-033
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 80 1e-032
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 80 1e-032
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 80 1e-032
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 80 1e-032
gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. v... 80 1e-032
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 80 1e-032
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 80 1e-032
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 80 2e-032
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 80 2e-032
gb|AV926207.1|AV926207 AV926207 K. Sato unpublished cDNA li... 80 2e-032
gb|AV925770.1|AV925770 AV925770 K. Sato unpublished cDNA li... 80 4e-032
gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subs... 136 4e-032
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 78 6e-032
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 78 6e-032
gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA li... 78 6e-032
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 78 6e-032
gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA li... 80 7e-032
gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA li... 80 8e-032
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 80 8e-032
gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA li... 80 8e-032
gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. v... 80 8e-032
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 80 8e-032
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 80 8e-032
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 80 2e-031
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 80 2e-031
gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA li... 133 2e-031
gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedl... 79 2e-030
gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA li... 79 3e-030
gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA li... 79 3e-030
gb|BF258638.2|BF258638 HVSMEf0016E13f Hordeum vulgare seedl... 78 2e-028
gb|BF064711.2|BF064711 HV_CEb0017G02f Hordeum vulgare seedl... 78 7e-028
gb|BG414971.1|BG414971 HVSMEk0004I03f Hordeum vulgare testa... 80 5e-024
gb|BQ467842.1|BQ467842 HR01B16r HR Hordeum vulgare subsp. v... 78 3e-023
gb|BM376392.2|BM376392 EBem05_SQ002_B14_R embryo, 14 DPA, n... 78 7e-023
gb|CA012990.1|CA012990 HT07B01r HT Hordeum vulgare subsp. v... 80 1e-022
gb|BU985115.1|BU985115 HF06C19r HF Hordeum vulgare subsp. v... 78 3e-021
>gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1a04 3', mRNA sequence
Length = 588
Score = 171 bits (369), Expect = 7e-043
Identities = 71/92 (77%), Positives = 73/92 (79%)
Frame = +3 / -3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFAVFQGLLK IAGVDTSFTVT+K GDDEEFSELYTFKW
Sbjct: 559 QFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWTTLLIPPTTL 380
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
NFIGVVAGI NAI GYESWGPLFGKLFF
Sbjct: 379 LLLNFIGVVAGISNAINNGYESWGPLFGKLFF 284
Score = 127 bits (272), Expect = 4e-029
Identities = 56/93 (60%), Positives = 57/93 (61%)
Frame = -1 / +3
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFP RGPHDSYP IA MPATTPMKF VHLNV SP
Sbjct: 282 AKKSFPKRGPHDSYPLLIALEMPATTPMKFSRSRVVGGINKVVHLNVYSSENSSSSPAFV 461
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVKLVSTPA L SPWNTA R +TPP QNC
Sbjct: 462 VTVKLVSTPAITLRSPWNTANRWAETPPMTQNC 560
Score = 106 bits (226), Expect = 4e-023
Identities = 49/92 (53%), Positives = 59/92 (64%)
Frame = +2 / -2
Query: 8 AVLXXWRRVFTSLCCVPGTTQXXSWCRHELHCDIQGRRRRGVLRALHIQMDDPSDTSDNP 187
AVL WR + S+C VP T+Q SWC H LH +GRR GV A+HIQMD+ D+ D+P
Sbjct: 560 AVLGHWRCLCPSICRVPRTSQGDSWCGH*LHRHNKGRR**GVF*AVHIQMDNLVDSPDHP 381
Query: 188 APTELHWSGSWHXXCDXXRI*IMGPPVREALL 283
A ELH G WH + RI*IMG +REALL
Sbjct: 380 ASAELHRCGCWHLQRNQQRI*IMGASLREALL 285
>gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. vulgare cDNA clone HU04L18
5-PRIME, mRNA sequence
Length = 644
Score = 171 bits (369), Expect = 7e-043
Identities = 71/92 (77%), Positives = 73/92 (79%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFAVFQGLLK IAGVDTSFTVT+K GDDEEFSELYTFKW
Sbjct: 337 QFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWTTLLIPPTTL 516
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
NFIGVVAGI NAI GYESWGPLFGKLFF
Sbjct: 517 LLLNFIGVVAGISNAINNGYESWGPLFGKLFF 612
Score = 127 bits (272), Expect = 4e-029
Identities = 56/93 (60%), Positives = 57/93 (61%)
Frame = -1 / -1
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFP RGPHDSYP IA MPATTPMKF VHLNV SP
Sbjct: 614 AKKSFPKRGPHDSYPLLIALEMPATTPMKFSRSRVVGGINKVVHLNVYSSENSSSSPAFV 435
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVKLVSTPA L SPWNTA R +TPP QNC
Sbjct: 434 VTVKLVSTPAITLRSPWNTANRWAETPPMTQNC 336
Score = 103 bits (220), Expect = 2e-022
Identities = 48/92 (52%), Positives = 59/92 (64%)
Frame = +2 / +3
Query: 8 AVLXXWRRVFTSLCCVPGTTQXXSWCRHELHCDIQGRRRRGVLRALHIQMDDPSDTSDNP 187
AVL WR + S+C VP T+Q SWC H LH +GRR GV A++IQMD+ D+ D+P
Sbjct: 336 AVLGHWRCLCPSICRVPRTSQGDSWCGH*LHRHNKGRR**GVF*AVYIQMDNLVDSPDHP 515
Query: 188 APTELHWSGSWHXXCDXXRI*IMGPPVREALL 283
A ELH G WH + RI*IMG +REALL
Sbjct: 516 ASAELHRCGCWHLQRNQQRI*IMGASLREALL 611
>gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03K08
5-PRIME, mRNA sequence
Length = 660
Score = 171 bits (369), Expect = 7e-043
Identities = 71/92 (77%), Positives = 73/92 (79%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFAVFQGLLK IAGVDTSFTVT+K GDDEEFSELYTFKW
Sbjct: 362 QFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWTTLLIPPTTL 541
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
NFIGVVAGI NAI GYESWGPLFGKLFF
Sbjct: 542 LLLNFIGVVAGISNAINNGYESWGPLFGKLFF 637
Score = 127 bits (272), Expect = 4e-029
Identities = 56/93 (60%), Positives = 57/93 (61%)
Frame = -1 / -1
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFP RGPHDSYP IA MPATTPMKF VHLNV SP
Sbjct: 639 AKKSFPKRGPHDSYPLLIALEMPATTPMKFSRSRVVGGINKVVHLNVYSSENSSSSPAFV 460
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVKLVSTPA L SPWNTA R +TPP QNC
Sbjct: 459 VTVKLVSTPAITLRSPWNTANRWAETPPMTQNC 361
Score = 103 bits (220), Expect = 2e-022
Identities = 48/92 (52%), Positives = 59/92 (64%)
Frame = +2 / +1
Query: 8 AVLXXWRRVFTSLCCVPGTTQXXSWCRHELHCDIQGRRRRGVLRALHIQMDDPSDTSDNP 187
AVL WR + S+C VP T+Q SWC H LH +GRR GV A++IQMD+ D+ D+P
Sbjct: 361 AVLGHWRCLCPSICRVPRTSQGDSWCGH*LHRHNKGRR**GVF*AVYIQMDNLVDSPDHP 540
Query: 188 APTELHWSGSWHXXCDXXRI*IMGPPVREALL 283
A ELH G WH + RI*IMG +REALL
Sbjct: 541 ASAELHRCGCWHLQRNQQRI*IMGASLREALL 636
>gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19J12
5-PRIME, mRNA sequence
Length = 649
Score = 171 bits (369), Expect = 7e-043
Identities = 71/92 (77%), Positives = 73/92 (79%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFAVFQGLLK IAGVDTSFTVT+K GDDEEFSELYTFKW
Sbjct: 229 QFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWTTLLIPPTTL 408
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
NFIGVVAGI NAI GYESWGPLFGKLFF
Sbjct: 409 LLLNFIGVVAGISNAINNGYESWGPLFGKLFF 504
Score = 127 bits (272), Expect = 4e-029
Identities = 56/93 (60%), Positives = 57/93 (61%)
Frame = -1 / -3
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFP RGPHDSYP IA MPATTPMKF VHLNV SP
Sbjct: 506 AKKSFPKRGPHDSYPLLIALEMPATTPMKFSRSRVVGGINKVVHLNVYSSENSSSSPAFV 327
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVKLVSTPA L SPWNTA R +TPP QNC
Sbjct: 326 VTVKLVSTPAITLRSPWNTANRWAETPPMTQNC 228
Score = 103 bits (220), Expect = 2e-022
Identities = 48/92 (52%), Positives = 59/92 (64%)
Frame = +2 / +3
Query: 8 AVLXXWRRVFTSLCCVPGTTQXXSWCRHELHCDIQGRRRRGVLRALHIQMDDPSDTSDNP 187
AVL WR + S+C VP T+Q SWC H LH +GRR GV A++IQMD+ D+ D+P
Sbjct: 228 AVLGHWRCLCPSICRVPRTSQGDSWCGH*LHRHNKGRR**GVF*AVYIQMDNLVDSPDHP 407
Query: 188 APTELHWSGSWHXXCDXXRI*IMGPPVREALL 283
A ELH G WH + RI*IMG +REALL
Sbjct: 408 ASAELHRCGCWHLQRNQQRI*IMGASLREALL 503
>gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53E19
5-PRIME, mRNA sequence
Length = 456
Score = 171 bits (369), Expect = 7e-043
Identities = 71/92 (77%), Positives = 73/92 (79%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFAVFQGLLK IAGVDTSFTVT+K GDDEEFSELYTFKW
Sbjct: 27 QFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWTTLLIPPTTL 206
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
NFIGVVAGI NAI GYESWGPLFGKLFF
Sbjct: 207 LLLNFIGVVAGISNAINNGYESWGPLFGKLFF 302
Score = 127 bits (272), Expect = 4e-029
Identities = 56/93 (60%), Positives = 57/93 (61%)
Frame = -1 / -3
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFP RGPHDSYP IA MPATTPMKF VHLNV SP
Sbjct: 304 AKKSFPKRGPHDSYPLLIALEMPATTPMKFSRSRVVGGINKVVHLNVYSSENSSSSPAFV 125
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVKLVSTPA L SPWNTA R +TPP QNC
Sbjct: 124 VTVKLVSTPAITLRSPWNTANRWAETPPMTQNC 26
Score = 103 bits (220), Expect = 2e-022
Identities = 48/92 (52%), Positives = 59/92 (64%)
Frame = +2 / +2
Query: 8 AVLXXWRRVFTSLCCVPGTTQXXSWCRHELHCDIQGRRRRGVLRALHIQMDDPSDTSDNP 187
AVL WR + S+C VP T+Q SWC H LH +GRR GV A++IQMD+ D+ D+P
Sbjct: 26 AVLGHWRCLCPSICRVPRTSQGDSWCGH*LHRHNKGRR**GVF*AVYIQMDNLVDSPDHP 205
Query: 188 APTELHWSGSWHXXCDXXRI*IMGPPVREALL 283
A ELH G WH + RI*IMG +REALL
Sbjct: 206 ASAELHRCGCWHLQRNQQRI*IMGASLREALL 301
>gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0024E12f, mRNA sequence
Length = 707
Score = 164 bits (352), Expect = 1e-040
Identities = 68/88 (77%), Positives = 70/88 (79%)
Frame = +3 / +2
Query: 21 IGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXXXXXN 200
IGGVS+HLFAVFQGLLK IAGVDTSFTVT+K GDDEEFSELYTFKW N
Sbjct: 17 IGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWTTLLMAATTLLLLN 196
Query: 201 FIGVVAGIXNAIXXGYESWGPLFGKLFF 284
FIGVVAGI NAI GYESWGPLFGKLFF
Sbjct: 197 FIGVVAGISNAINNGYESWGPLFGKLFF 280
Score = 119 bits (255), Expect = 8e-027
Identities = 53/88 (60%), Positives = 54/88 (61%)
Frame = -1 / -3
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFP RGPHDSYP IA MPATTPMKF VHLNV SP
Sbjct: 282 AKKSFPKRGPHDSYPLLIALEMPATTPMKFSRSRVVAAINKVVHLNVYSSENSSSSPAFV 103
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPP 23
VTVKLVSTPA L SPWNTA R +TPP
Sbjct: 102 VTVKLVSTPAITLRSPWNTANRWAETPP 19
Score = 100 bits (214), Expect = 2e-021
Identities = 46/87 (52%), Positives = 55/87 (63%)
Frame = +2 / +1
Query: 23 WRRVFTSLCCVPGTTQXXSWCRHELHCDIQGRRRRGVLRALHIQMDDPSDTSDNPAPTEL 202
WR + S+C VP T+Q SWC H LH +GRR GV A+HIQMD+ D D+PA EL
Sbjct: 19 WRCLCPSICRVPRTSQGDSWCGH*LHRHNKGRR**GVF*AVHIQMDNLVDGGDHPASAEL 198
Query: 203 HWSGSWHXXCDXXRI*IMGPPVREALL 283
H G WH + RI*IMG +REALL
Sbjct: 199 HRCGCWHLQRNQQRI*IMGASLREALL 279
>gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013O09f, mRNA sequence
Length = 938
Score = 157 bits (338), Expect = 1e-038
Identities = 66/86 (76%), Positives = 68/86 (79%)
Frame = +3 / +1
Query: 27 GVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXXXXXNFI 206
GVS+HLFAVFQGLLK IAGVDTSFTVT+K GDDEEFSELYTFKW NFI
Sbjct: 1 GVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWTTLLIPPTTLLLLNFI 180
Query: 207 GVVAGIXNAIXXGYESWGPLFGKLFF 284
GVVAGI NAI GYESWGPLFGKLFF
Sbjct: 181 GVVAGISNAINNGYESWGPLFGKLFF 258
Score = 112 bits (239), Expect = 1e-024
Identities = 51/86 (59%), Positives = 52/86 (60%)
Frame = -1 / -1
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFP RGPHDSYP IA MPATTPMKF VHLNV SP
Sbjct: 260 AKKSFPKRGPHDSYPLLIALEMPATTPMKFSRSRVVGGINKVVHLNVYSSENSSSSPAFV 81
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDT 29
VTVKLVSTPA L SPWNTA R +T
Sbjct: 80 VTVKLVSTPAITLRSPWNTANRWAET 3
>gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51J24
5-PRIME, mRNA sequence
Length = 463
Score = 80.3 bits (169), Expect(2) = 9e-033
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D++
Sbjct: 130 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 249
Score = 76.2 bits (160), Expect(2) = 9e-033
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 244 EDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFF 408
>gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_J01 5', mRNA sequence
Length = 518
Score = 80.3 bits (169), Expect(2) = 1e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D++
Sbjct: 52 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 171
Score = 76.2 bits (160), Expect(2) = 1e-032
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 166 EDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFF 330
>gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. vulgare cDNA clone HB03K11
5-PRIME, mRNA sequence
Length = 577
Score = 80.3 bits (169), Expect(2) = 1e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D++
Sbjct: 46 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 165
Score = 76.2 bits (160), Expect(2) = 1e-032
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 160 EDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFF 324
>gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. vulgare cDNA clone HX10P19
3-PRIME, mRNA sequence
Length = 616
Score = 80.3 bits (169), Expect(2) = 1e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / -2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D++
Sbjct: 564 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 445
Score = 76.2 bits (160), Expect(2) = 1e-032
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / -2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 450 EDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFF 286
>gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. vulgare cDNA clone HF13B10
5-PRIME, mRNA sequence
Length = 622
Score = 80.3 bits (169), Expect(2) = 1e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D++
Sbjct: 213 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 332
Score = 76.2 bits (160), Expect(2) = 1e-032
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 327 EDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFF 491
>gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. vulgare cDNA clone HF16M09
5-PRIME, mRNA sequence
Length = 643
Score = 80.3 bits (169), Expect(2) = 1e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D++
Sbjct: 310 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 429
Score = 76.2 bits (160), Expect(2) = 1e-032
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 424 EDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFF 588
>gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01M13
5-PRIME, mRNA sequence
Length = 653
Score = 80.3 bits (169), Expect(2) = 1e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D++
Sbjct: 141 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 260
Score = 76.2 bits (160), Expect(2) = 1e-032
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 255 EDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFF 419
>gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. vulgare cDNA clone HI12P13
3-PRIME, mRNA sequence
Length = 651
Score = 80.3 bits (169), Expect(2) = 1e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / -1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D++
Sbjct: 621 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 502
Score = 76.2 bits (160), Expect(2) = 1e-032
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / -1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 507 EDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFF 343
>gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 3', mRNA sequence
Length = 658
Score = 80.3 bits (169), Expect(2) = 2e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / -2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D++
Sbjct: 621 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 502
Score = 75.8 bits (159), Expect(2) = 2e-032
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / -2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 507 EDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINIGYQSWGPLFGKLFF 343
>gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i06 3', mRNA sequence
Length = 658
Score = 80.3 bits (169), Expect(2) = 2e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / -1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D++
Sbjct: 628 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 509
Score = 75.8 bits (159), Expect(2) = 2e-032
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / -1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 514 EDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINIGYQSWGPLFGKLFF 350
>gb|AV926207.1|AV926207 AV926207 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 5', mRNA sequence
Length = 668
Score = 80.3 bits (169), Expect(2) = 2e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D++
Sbjct: 387 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 506
Score = 75.8 bits (159), Expect(2) = 2e-032
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 501 EDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINIGYQSWGPLFGKLFF 665
>gb|AV925770.1|AV925770 AV925770 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l19 5', mRNA sequence
Length = 425
Score = 80.3 bits (169), Expect(2) = 4e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D++
Sbjct: 120 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 239
Score = 73.9 bits (155), Expect(2) = 4e-032
Identities = 28/55 (50%), Positives = 33/55 (60%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GV AG AI GY+SWGPLFGKLFF
Sbjct: 234 EDNDFAELYMFKWTTLLIPPTTILIINLVGVXAGTSYAINSGYQSWGPLFGKLFF 398
>gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081H04F1, mRNA sequence
Length = 360
Score = 136 bits (291), Expect = 4e-032
Identities = 57/76 (75%), Positives = 58/76 (76%)
Frame = +3 / +2
Query: 57 QGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAI 236
QGLLK IAGVDTSFTVT+K GDDEEFSELYTFKW NFIGVVAGI NAI
Sbjct: 2 QGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGISNAI 181
Query: 237 XXGYESWGPLFGKLFF 284
GYESWGPLFGKLFF
Sbjct: 182 NNGYESWGPLFGKLFF 229
Score = 101 bits (215), Expect = 2e-021
Identities = 46/77 (59%), Positives = 46/77 (59%)
Frame = -1 / -1
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFP RGPHDSYP IA MPATTPMKF VHLNV SP
Sbjct: 231 AKKSFPKRGPHDSYPLLIALEMPATTPMKFSRSRVVGGINKVVHLNVYSSENSSSSPAFV 52
Query: 106 VTVKLVSTPAXXLSSPW 56
VTVKLVSTPA L SPW
Sbjct: 51 VTVKLVSTPAITLRSPW 1
>gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
5-PRIME, mRNA sequence
Length = 617
Score = 77.6 bits (163), Expect(2) = 6e-032
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 185 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 304
Score = 76.7 bits (161), Expect(2) = 6e-032
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +G+VAGI AI GY+SWGPLFGKLFF
Sbjct: 299 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFF 463
>gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
5-PRIME, mRNA sequence
Length = 638
Score = 77.6 bits (163), Expect(2) = 6e-032
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 185 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 304
Score = 76.7 bits (161), Expect(2) = 6e-032
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +G+VAGI AI GY+SWGPLFGKLFF
Sbjct: 299 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFF 463
>gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42j03 5', mRNA sequence
Length = 685
Score = 77.6 bits (163), Expect(2) = 6e-032
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 358 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 477
Score = 76.7 bits (161), Expect(2) = 6e-032
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +G+VAGI AI GY+SWGPLFGKLFF
Sbjct: 472 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFF 636
>gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16T 5', mRNA sequence
Length = 700
Score = 77.6 bits (163), Expect(2) = 6e-032
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 177 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 296
Score = 76.7 bits (161), Expect(2) = 6e-032
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +G+VAGI AI GY+SWGPLFGKLFF
Sbjct: 291 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFF 455
>gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 5', mRNA sequence
Length = 583
Score = 80.3 bits (169), Expect(2) = 7e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D+E
Sbjct: 211 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 330
Score = 73.5 bits (154), Expect(2) = 7e-032
Identities = 28/55 (50%), Positives = 34/55 (61%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++ +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 325 EEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFF 489
>gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 5', mRNA sequence
Length = 604
Score = 80.3 bits (169), Expect(2) = 8e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D+E
Sbjct: 30 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 149
Score = 73.5 bits (154), Expect(2) = 8e-032
Identities = 28/55 (50%), Positives = 34/55 (61%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++ +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 144 EEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFF 308
>gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. vulgare cDNA clone HF25D10
5-PRIME, mRNA sequence
Length = 621
Score = 80.3 bits (169), Expect(2) = 8e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D+E
Sbjct: 51 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 170
Score = 73.5 bits (154), Expect(2) = 8e-032
Identities = 28/55 (50%), Positives = 34/55 (61%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++ +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 165 EEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFF 329
>gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 5', mRNA sequence
Length = 631
Score = 80.3 bits (169), Expect(2) = 8e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D+E
Sbjct: 31 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 150
Score = 73.5 bits (154), Expect(2) = 8e-032
Identities = 28/55 (50%), Positives = 34/55 (61%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++ +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 145 EEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFF 309
>gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
5-PRIME, mRNA sequence
Length = 643
Score = 80.3 bits (169), Expect(2) = 8e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D+E
Sbjct: 29 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 148
Score = 73.5 bits (154), Expect(2) = 8e-032
Identities = 28/55 (50%), Positives = 34/55 (61%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++ +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 143 EEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFF 307
>gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 5', mRNA sequence
Length = 654
Score = 80.3 bits (169), Expect(2) = 8e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D+E
Sbjct: 212 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 331
Score = 73.5 bits (154), Expect(2) = 8e-032
Identities = 28/55 (50%), Positives = 34/55 (61%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++ +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 326 EEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFF 490
>gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 5', mRNA sequence
Length = 656
Score = 80.3 bits (169), Expect(2) = 8e-032
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D+E
Sbjct: 219 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 338
Score = 73.5 bits (154), Expect(2) = 8e-032
Identities = 28/55 (50%), Positives = 34/55 (61%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++ +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 333 EEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFF 497
>gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105G09_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 916
Score = 80.3 bits (169), Expect(2) = 2e-031
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D+E
Sbjct: 172 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 291
Score = 73.5 bits (154), Expect(2) = 2e-031
Identities = 28/55 (50%), Positives = 34/55 (61%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++ +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 286 EEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFF 450
>gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109B12_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 880
Score = 80.3 bits (169), Expect(2) = 2e-031
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D+E
Sbjct: 410 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 529
Score = 73.5 bits (154), Expect(2) = 2e-031
Identities = 28/55 (50%), Positives = 34/55 (61%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++ +F+ELY FKW N +GVVAG AI GY+SWGPLFGKLFF
Sbjct: 524 EEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFF 688
>gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20i09 5', mRNA sequence
Length = 579
Score = 133 bits (286), Expect = 2e-031
Identities = 56/75 (74%), Positives = 57/75 (76%)
Frame = +3 / +2
Query: 60 GLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIX 239
GLLK IAGVDTSFTVT+K GDDEEFSELYTFKW NFIGVVAGI NAI
Sbjct: 2 GLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGISNAIN 181
Query: 240 XGYESWGPLFGKLFF 284
GYESWGPLFGKLFF
Sbjct: 182 NGYESWGPLFGKLFF 226
>gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020M07f, mRNA sequence
Length = 533
Score = 78.5 bits (165), Expect(2) = 2e-030
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGGVS+HLFAVFQG LK + GVDT+FTVTSK G DE
Sbjct: 117 QFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADE 236
Score = 70.3 bits (147), Expect(2) = 2e-030
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +3 / +3
Query: 126 EEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+ F +LY FKW N +G+VAG+ +A+ GY SWGPLFGKLFF
Sbjct: 240 DAFGDLYLFKWTTLLIPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFF 398
>gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12l12 5', mRNA sequence
Length = 656
Score = 78.5 bits (165), Expect(2) = 3e-030
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGGVS+HLFAVFQG LK + GVDT+FTVTSK G DE
Sbjct: 245 QFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADE 364
Score = 70.3 bits (147), Expect(2) = 3e-030
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +3 / +2
Query: 126 EEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+ F +LY FKW N +G+VAG+ +A+ GY SWGPLFGKLFF
Sbjct: 368 DAFGDLYLFKWTTLLIPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFF 526
>gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdl12 3', mRNA sequence
Length = 661
Score = 78.5 bits (165), Expect(2) = 3e-030
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +3 / -1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGGVS+HLFAVFQG LK + GVDT+FTVTSK G DE
Sbjct: 640 QFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADE 521
Score = 70.3 bits (147), Expect(2) = 3e-030
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +3 / -1
Query: 126 EEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+ F +LY FKW N +G+VAG+ +A+ GY SWGPLFGKLFF
Sbjct: 517 DAFGDLYLFKWTTLLIPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFF 359
>gb|BF258638.2|BF258638 HVSMEf0016E13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016E13f, mRNA sequence
Length = 578
Score = 77.6 bits (163), Expect(3) = 2e-028
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 283 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 402
Score = 62.9 bits (131), Expect(3) = 2e-028
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGK 275
+D +F+ELY FKW N +G+VAGI AI GY+SWGPL K
Sbjct: 397 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLLRK 552
Score = 18.0 bits (33), Expect(3) = 2e-028
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3 / +2
Query: 267 FGKLFF 284
FGKLFF
Sbjct: 545 FGKLFF 562
>gb|BF064711.2|BF064711 HV_CEb0017G02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017G02f, mRNA sequence
Length = 812
Score = 77.6 bits (163), Expect(2) = 7e-028
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 446 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 565
Score = 63.4 bits (132), Expect(2) = 7e-028
Identities = 25/55 (45%), Positives = 31/55 (56%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +G+VAGI AI GY+SWGP K FF
Sbjct: 560 EDGDFAELYVFKWTSLLIPPTNRLVINLVGMVAGISYAINSGYKSWGPALWKGFF 724
>gb|BG414971.1|BG414971 HVSMEk0004I03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004I03f, mRNA sequence
Length = 634
Score = 80.3 bits (169), Expect(3) = 5e-024
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D+E
Sbjct: 291 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 410
Score = 39.6 bits (80), Expect(3) = 5e-024
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWG 260
++ + +ELY FKW N +GVVAG AI G++ G
Sbjct: 405 EEGDXAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGFQFLG 545
Score = 24.0 bits (46), Expect(3) = 5e-024
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3 / +1
Query: 252 SWGPLFGKLFF 284
SWGP F K FF
Sbjct: 538 SWGPFFRKPFF 570
>gb|BQ467842.1|BQ467842 HR01B16r HR Hordeum vulgare subsp. vulgare cDNA clone HR01B16
5-PRIME, mRNA sequence
Length = 498
Score = 77.6 bits (163), Expect(2) = 3e-023
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 252 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 371
Score = 46.9 bits (96), Expect(2) = 3e-023
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYE 251
+D +F+ELY FKW N +G+VAGI AI GY+
Sbjct: 366 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQ 497
>gb|BM376392.2|BM376392 EBem05_SQ002_B14_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_B14 5', mRNA sequence
Length = 555
Score = 77.6 bits (163), Expect(2) = 7e-023
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 311 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 430
Score = 46.0 bits (94), Expect(2) = 7e-023
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGY 248
+D +F+ELY FKW N +G+VAGI AI GY
Sbjct: 425 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGY 553
>gb|CA012990.1|CA012990 HT07B01r HT Hordeum vulgare subsp. vulgare cDNA clone HT07B01
5-PRIME, mRNA sequence
Length = 579
Score = 80.3 bits (169), Expect(2) = 1e-022
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D+E
Sbjct: 336 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 455
Score = 42.8 bits (87), Expect(2) = 1e-022
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGY 248
++ +F+ELY FKW N +GVVAG AI GY
Sbjct: 450 EEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGY 578
>gb|BU985115.1|BU985115 HF06C19r HF Hordeum vulgare subsp. vulgare cDNA clone HF06C19
5-PRIME, mRNA sequence
Length = 548
Score = 77.6 bits (163), Expect(2) = 3e-021
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 318 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 437
Score = 40.5 bits (82), Expect(2) = 3e-021
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAI 236
+D +F+ELY FKW N +G+VAGI AI
Sbjct: 432 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAI 548
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 133,207,744
Number of Sequences: 312970
Number of extensions: 1768800
Number of successful extensions: 173367
Number of sequences better than 1.0e-020: 55
length of database: 58,378,179
effective HSP length: 48
effective length of database: 43,355,619
effective search space used: 1994358474
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)