TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA13d08.yg.2.1
(511 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU968786.1|BU968786 HB08J10r BC Hordeum vulgare subsp. v... 155 1e-048
>gb|BU968786.1|BU968786 HB08J10r BC Hordeum vulgare subsp. vulgare cDNA clone HB08J10
5-PRIME, mRNA sequence
Length = 581
Score = 155 bits (334), Expect(2) = 1e-048
Identities = 64/82 (78%), Positives = 74/82 (90%)
Frame = +1 / +1
Query: 265 CQGALVGDLSLMCPEFIQSFMAGLAASGVLTSALRLVTKAAFESSKDGLRIGAILFFSIT 444
C G LVGDLSLMCPEFIQSF++GLAASGV+TSALRL+TKAAFE+S++GLR GA+LFFS+T
Sbjct: 97 C*GGLVGDLSLMCPEFIQSFLSGLAASGVITSALRLITKAAFENSQNGLRNGAMLFFSVT 276
Query: 445 CLFELVCLLLYTFVFGKLPIVK 510
C+FEL C LLY VF KLPIVK
Sbjct: 277 CIFELACFLLYALVFPKLPIVK 342
Score = 131 bits (281), Expect(2) = 5e-038
Identities = 58/82 (70%), Positives = 62/82 (75%)
Frame = -3 / -1
Query: 509 FTMGSLPKTNVYSRRHTSSNRHVIEKNSIAPMRRPSFELSKAALVTNLKADVRTPDAASP 330
FTMG+L KTN Y R+ SS HV EKN+IAP RRP E SKAA V +LKADV TPDAA P
Sbjct: 341 FTMGNLGKTNAYRRKQASSKMHVTEKNNIAPFRRPFCEFSKAAFVISLKADVITPDAAKP 162
Query: 329 AMKD*MNSGHIKERSPTSAP*Q 264
KD*MNSGHIKERSPT P*Q
Sbjct: 161 DRKD*MNSGHIKERSPTKPP*Q 96
Score = 109 bits (232), Expect(2) = 1e-029
Identities = 47/82 (57%), Positives = 54/82 (65%)
Frame = +3 / +3
Query: 264 LSRRTGWRPFFNVPRVHSVLHGGTSCIRGPNISFEISYQGSF*ELKRWSSHWSYTVLFNH 443
L R GW PFF+VP VHSVL CIR NISFE +Y+GSF*EL +W S WSY +L +
Sbjct: 96 LLRWLGW*PFFDVPGVHSVLSVRLGCIRSYNISFETNYKGSF*ELTKWPSKWSYVILLGN 275
Query: 444 MPVRAGVPPAIHIRLRQTTHRE 509
M RA + P I I L Q THRE
Sbjct: 276 MHFRASLLPPIRISLSQITHRE 341
Score = 102 bits (218), Expect(2) = 2e-027
Identities = 53/89 (59%), Positives = 62/89 (69%)
Frame = -2 / -3
Query: 510 LHDG*FAEDECV*QEAHQLEQACD*KEQYSSNAKTIF*ALKSCLGN*SQS*C*DP*CS*S 331
LHDG*F +D CV*+EA LE AC +E +SS +K I * LKSCL N*SQS*C + *CS +
Sbjct: 342 LHDG*FGKD*CV*EEAS*LENACYREE*HSSISKAIL*VLKSCLCN*SQS*CYNS*CSQA 163
Query: 330 RHEGLNELWAH*RKVANQCALTISISCPK 244
+GLNEL AH RKV NQ LT + PK
Sbjct: 162 *QKGLNELRAHQRKVTNQATLTSASDVPK 76
Score = 83.1 bits (175), Expect(2) = 5e-021
Identities = 46/82 (56%), Positives = 51/82 (62%)
Frame = -1 / -2
Query: 511 TSRWVVCRRRMCIAGGTPARTGM*LKRTV*LQCEDHLLSSQKLPW*LISKLMLGPLMQLV 332
TSRWV+ R M I G AR M +R *L E H +SSQKLP *L+SKLML LMQ
Sbjct: 343 TSRWVIWERLMRIGGSKLARKCMLPRRIT*LHFEGHFVSSQKLPL*LVSKLML*LLMQPS 164
Query: 331 PP*RTE*TLGTLKKGRQPVRLD 266
RTE*T GT KKG QP L+
Sbjct: 163 LTERTE*TPGTSKKGHQPSHLN 98
Score = 56.5 bits (117), Expect(2) = 1e-048
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = +1 / +2
Query: 178 DVATKGHGGLGVFVGVCIISAIFGTADA 261
DV TKGHGG+ ++GVCIISA+FGT+DA
Sbjct: 11 DVGTKGHGGIPAYIGVCIISALFGTSDA 94
Score = 45.5 bits (93), Expect(2) = 5e-038
Identities = 19/30 (63%), Positives = 20/30 (66%)
Frame = -3 / -3
Query: 260 ASAVPNMALIMHTPTKTPSPPCPLVATSRI 171
AS VP ALIMHTP PPCPLV TS +
Sbjct: 93 ASDVPKRALIMHTPMYAGIPPCPLVPTSLV 4
Score = 40.0 bits (81), Expect(2) = 1e-029
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +3 / +1
Query: 192 RTWWAWCFRWCMHN*RHIWDS*C 260
RTWW WCMHN WD *C
Sbjct: 25 RTWWNSSIHWCMHNQCPFWDI*C 93
Score = 38.6 bits (78), Expect(2) = 2e-027
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2 / -2
Query: 258 ISCPKYGANYAYTNENTKPTMSFSCNI 178
I CPK G +YAYTN TMSF N+
Sbjct: 91 IRCPKKGTDYAYTNVCWNSTMSFGTNV 11
Score = 36.8 bits (74), Expect(2) = 5e-021
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -1 / -1
Query: 259 HQLSQIWR*LCIHQRKHQAHHVL*LQHP 176
HQ+SQ *LCIHQ + HHVL Q P
Sbjct: 92 HQMSQKGH*LCIHQCMLEFHHVLWYQRP 9
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 256,716,893
Number of Sequences: 312970
Number of extensions: 4044271
Number of successful extensions: 99143
Number of sequences better than 1.0e-020: 1
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 5084831801
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)