TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCA10g02.yg.2.1
         (277 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA012753.1|CA012753  HT06F12r HT Hordeum vulgare subsp. v...   120   1e-039
gb|BQ471087.1|BQ471087  HX04O21r HX Hordeum vulgare subsp. v...    93   4e-032
gb|CA008120.1|CA008120  HU09P10r HU Hordeum vulgare subsp. v...   105   1e-022
gb|AV836706.1|AV836706  AV836706 K. Sato unpublished cDNA li...   104   3e-022

>gb|CA012753.1|CA012753 HT06F12r HT Hordeum vulgare subsp. vulgare cDNA clone HT06F12
           5-PRIME, mRNA sequence
          Length = 700

 Score =  120 bits (256), Expect(2) = 1e-039
 Identities = 46/65 (70%), Positives = 55/65 (84%)
 Frame = -3 / +1

                                                                       
Query: 197 SGSNDGEGMGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQV 18
           +  N G+ MGES+GAYIVRIP GPR+KY+ KE LWP++QEFVDGAL HI+ MSK LGEQV
Sbjct: 196 NSENLGDDMGESSGAYIVRIPFGPREKYIPKEQLWPHIQEFVDGALVHIMQMSKVLGEQV 375

                
Query: 17  GNGRP 3
           GNG+P
Sbjct: 376 GNGQP 390




 Score = 61.1 bits (127), Expect(2) = 1e-039
 Identities = 23/34 (67%), Positives = 28/34 (82%)
 Frame = -3 / +1

                                             
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG 174
           RVDL TRQ+S+PDVDWSYGEPTEML   +++  G
Sbjct: 112 RVDLLTRQISAPDVDWSYGEPTEMLSPRNSENLG 213



>gb|BQ471087.1|BQ471087 HX04O21r HX Hordeum vulgare subsp. vulgare cDNA clone HX04O21
           5-PRIME, mRNA sequence
          Length = 268

 Score = 93.2 bits (197), Expect(2) = 4e-032
 Identities = 35/52 (67%), Positives = 43/52 (82%)
 Frame = -3 / +1

                                                               
Query: 197 SGSNDGEGMGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNM 42
           +  N G+ MGES+GAYIVRIP GPR+KY+ KE LWP++QEFVDGAL HI+ M
Sbjct: 112 NSENLGDDMGESSGAYIVRIPFGPREKYIPKEQLWPHIQEFVDGALVHIMQM 267




 Score = 61.1 bits (127), Expect(2) = 4e-032
 Identities = 23/34 (67%), Positives = 28/34 (82%)
 Frame = -3 / +1

                                             
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG 174
           RVDL TRQ+S+PDVDWSYGEPTEML   +++  G
Sbjct: 28  RVDLLTRQISAPDVDWSYGEPTEMLSPRNSENLG 129



>gb|CA008120.1|CA008120 HU09P10r HU Hordeum vulgare subsp. vulgare cDNA clone HU09P10
           5-PRIME, mRNA sequence
          Length = 594

 Score =  105 bits (223), Expect = 1e-022
 Identities = 39/56 (69%), Positives = 48/56 (85%)
 Frame = -3 / +3

                                                                   
Query: 170 GESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
           GE+ GAYI RIP GP+DKYL KE LWPY+QEFVDGAL+HI++MSK +GE++G G P
Sbjct: 9   GENCGAYITRIPFGPKDKYLAKEHLWPYVQEFVDGALSHIVHMSKIIGEEIGCGHP 176



>gb|AV836706.1|AV836706 AV836706 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
           vulgare seedling leaves second leaf stage Hordeum
           vulgare subsp. vulgare cDNA clone basd26l03, mRNA
           sequence
          Length = 555

 Score =  104 bits (221), Expect = 3e-022
 Identities = 38/62 (61%), Positives = 49/62 (79%)
 Frame = -3 / +1

                                                                       
Query: 188 NDGEGMGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNG 9
           N  +  GE++G YI+RIP GPRD YL KE LWP++QEFVDGAL+HI+ MSK +GE++G G
Sbjct: 34  NSKQEKGENSGGYIIRIPFGPRDMYLTKERLWPFIQEFVDGALSHIVRMSKTIGEEIGCG 213

             
Query: 8   RP 3
            P
Sbjct: 214 HP 219



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 167,665,597
Number of Sequences: 312970
Number of extensions: 2806959
Number of successful extensions: 289598
Number of sequences better than 1.0e-020: 5
length of database: 58,378,179
effective HSP length: 48
effective length of database: 43,355,619
effective search space used: 1864291617
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)