TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.064G21F020918.3.1
         (705 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AV836405.1|AV836405  AV836405 K. Sato unpublished cDNA li...   161   3e-039

>gb|AV836405.1|AV836405 AV836405 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
           vulgare seedling leaves second leaf stage Hordeum
           vulgare subsp. vulgare cDNA clone basd14a23, mRNA
           sequence
          Length = 641

 Score =  161 bits (347), Expect = 3e-039
 Identities = 62/99 (62%), Positives = 73/99 (73%)
 Frame = -2 / -3

                                                                       
Query: 704 HCCIWWWCPIRRHHLWTPHIRVPLMGWSYR*MKKSRWGYWSCPSSIIVCLELRPIRICCG 525
           H C+WW  P+RRHHLWTPHI +PL  WS+R*MK SRWG+ S    IIVCL+L P+RICC 
Sbjct: 507 HRCVWWRRPVRRHHLWTPHIWMPLRTWSHR*MKISRWGHLSRARDIIVCLKLGPVRICCR 328

                                                  
Query: 524 GVSRCTRLILYC*RFLRFGPSSHITLSHCLFPSSTLMFL 408
            +SRCT  ILYC RFL FGP  HI+LSH  F +S+  FL
Sbjct: 327 RISRCTLFILYCRRFLGFGPRGHISLSHYYFLASSPFFL 211




 Score =  144 bits (309), Expect = 5e-034
 Identities = 54/66 (81%), Positives = 59/66 (89%)
 Frame = +3 / +1

                                                                       
Query: 456 VATRSKSQKSSAIQNEPSTPANPPTAYPDWSQFQAYYNAAGTAPVTPPAFFHSSVAPTHQ 635
           VATRSKSQKSS +QNE STP NPPTAYPDWSQFQAYYN  GTA +TPPA+FHS+VAP+ Q
Sbjct: 259 VATRSKSQKSSTVQNEQSTPTNPPTAYPDWSQFQAYYNVPGTAQMTPPAYFHSTVAPSPQ 438

                 
Query: 636 GHPYMW 653
           GHPYMW
Sbjct: 439 GHPYMW 456




 Score =  138 bits (297), Expect = 2e-032
 Identities = 58/88 (65%), Positives = 65/88 (73%)
 Frame = +1 / +2

                                                                       
Query: 442 WERVMWLLGPNLKNRQQYRMSRVHLLTPPQHILIGLSSRHTIMLLGQLQ*PHRLFFIHL* 621
           WER MW  GPN +NR+QYRM+RVHLL   QHIL G S RHTIM L +L+*PHRL FI   
Sbjct: 245 WERDMWPRGPNPRNRRQYRMNRVHLLILLQHILTGPSFRHTIMSLARLK*PHRLIFIQRW 424

                                       
Query: 622 LQPIRGTRICGVHR*CLLMGHHHHMQQC 705
           LQ +RG  ICGVHR*CLL G  HH Q+C
Sbjct: 425 LQVLRGIHICGVHR*CLLTGRRHHTQRC 508




 Score =  127 bits (272), Expect = 6e-029
 Identities = 61/105 (58%), Positives = 67/105 (63%)
 Frame = -1 / -2

                                                                       
Query: 705 TLLHMVVVSHKEASSVDPTYTGAPDGLELQMNEKKPVGLLELSQQHYSMPGTETNQDMLW 526
           T L MV  S KEASSVDPTY  AP+ LE  +NE KPVG  E  Q HYSMP T T+QDML 
Sbjct: 508 TSLRMVAASRKEASSVDPTYMDAPEDLEPPLNENKPVGSFEPCQGHYSMPETGTSQDML* 329

                                                        
Query: 525 GG*QVYSAHSVLLTIFEIWT**PHHPFPLFISVLYPYVPFALYSL 391
             * VYS HSVL TI  IWT  PH PFPL    L  ++PF  + L
Sbjct: 328 ED**VYSVHSVLSTISGIWTSWPHIPFPLLFPRL*SFLPFTSFVL 194




 Score =  125 bits (268), Expect = 2e-028
 Identities = 62/104 (59%), Positives = 71/104 (68%)
 Frame = +2 / +3

                                                                       
Query: 392 REYKAKGT*G*RTEINNGKG*CGY*VQISKIVSNTE*AEYTC*PPHSIS*LVSVPGIL*C 571
           R  + KG   *R   NNGKG CG+ VQI +IV +TE* EYT *  +SIS*LV V GIL*C
Sbjct: 195 RTKEVKGRKD*RRGNNNGKGICGHEVQIPEIVDSTE*TEYTY*SSYSIS*LVPVSGIL*C 374

                                                       
Query: 572 CWDSSSNPTGFFSFICSSNPSGAPVYVGSTDDASLWDTTTICNN 703
            W  S++PTG FSF   S  SGA +YVGSTDDASL D  TI N+
Sbjct: 375 PWHGSNDPTGLFSFNGGSKSSGASIYVGSTDDASLRDAATIRND 506



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 369,737,066
Number of Sequences: 312970
Number of extensions: 6732233
Number of successful extensions: 91090
Number of sequences better than 1.0e-020: 1
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7762257747
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)