TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS5e09.xg.2.1
(723 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF257303.2|BF257303 HVSMEf0012H19f Hordeum vulgare seedl... 135 9e-047
gb|BF622731.2|BF622731 HVSMEa0008E02f Hordeum vulgare seedl... 101 4e-040
gb|BF620291.2|BF620291 HVSMEc0019F18f Hordeum vulgare seedl... 106 5e-037
gb|BF628779.2|BF628779 HVSMEb0008B22f Hordeum vulgare seedl... 87 6e-034
gb|BM816260.1|BM816260 HC113E04_SK.ab1 HC Hordeum vulgare s... 141 3e-033
gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA li... 141 4e-033
gb|BJ463253.1|BJ463253 BJ463253 K. Sato unpublished cDNA li... 141 4e-033
gb|BF628789.2|BF628789 HVSMEb0008D18f Hordeum vulgare seedl... 87 8e-033
gb|BU994619.1|BU994619 HM07K10r HM Hordeum vulgare subsp. v... 92 3e-031
gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare s... 81 6e-031
gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA li... 98 2e-030
gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA li... 98 2e-030
gb|BQ763939.1|BQ763939 EBro03_SQ005_G23_R root, 3 week, wat... 88 2e-029
emb|X15694.1|HVBRNZ1H Barley bronze 1 homologue for UDPgluc... 79 9e-026
gb|CB880150.1|CB880150 HM05K10w HM Hordeum vulgare subsp. v... 92 1e-025
gb|BF260942.2|BF260942 HVSMEf0023F14f Hordeum vulgare seedl... 115 3e-025
gb|BF623637.2|BF623637 HVSMEa0003E04f Hordeum vulgare seedl... 70 5e-025
gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedl... 77 8e-025
gb|BQ768134.1|BQ768134 EBro08_SQ010_E19_R root, 3 week, dro... 71 2e-024
gb|CA028126.1|CA028126 HZ61B05r HZ Hordeum vulgare subsp. v... 60 2e-023
gb|BQ466592.1|BQ466592 HT02P16r HT Hordeum vulgare subsp. v... 78 4e-023
gb|BI780035.2|BI780035 EBma08_SQ001_D16_R maternal, 28 DPA,... 70 4e-023
gb|AJ462135.1|AJ462135 AJ462135 S00002 Hordeum vulgare subs... 107 9e-023
gb|BM443110.2|BM443110 EBro02_SQ002_J16_R root, 3 week, hyd... 64 9e-023
gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. v... 106 1e-022
gb|CA009114.1|CA009114 HU13D11r HU Hordeum vulgare subsp. v... 80 2e-022
gb|BI956242.1|BI956242 HVSMEn0001H15f Hordeum vulgare rachi... 105 3e-022
gb|BF255421.3|BF255421 HVSMEf0006N01f Hordeum vulgare seedl... 92 4e-022
emb|AJ496572.1|HVU496572 Hordeum vulgare partial mRNA for p... 68 1e-021
gb|BF622661.2|BF622661 HVSMEa0007K11f Hordeum vulgare seedl... 74 5e-021
gb|CA015634.1|CA015634 HT14O18r HT Hordeum vulgare subsp. v... 67 5e-021
>gb|BF257303.2|BF257303 HVSMEf0012H19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012H19f, mRNA sequence
Length = 847
Score = 135 bits (290), Expect = 2e-031
Identities = 71/147 (48%), Positives = 76/147 (51%)
Frame = -2 / -1
Query: 620 HTSHTXXXVGXWSPKMGLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGAHSITLP 441
HT T WS K G SIGTPS LS VEF P V P TAG STS CGAHS T+P
Sbjct: 559 HTCFTSLAFPIWSXKCGRQSIGTPSHTLSVVEFQPPCVQNPATAGCRSTSSCGAHSTTIP 380
Query: 440 LPSTAAMNPSGSSCLSXXXXXXXXXXXXXXXPLFAKPHAISTNSSGVT*TTLPKLTYSTD 261
P AA NPSGS L A PHA+ST S LPKLTYSTD
Sbjct: 379 RPLVAASNPSGSRVSPSAATRPGRTTQRNGTRLPAMPHAVSTRSRADMHARLPKLTYSTD 200
Query: 260 PGARASSHSMQTRSWLRRLVSSAPSLE 180
ASSH Q RS RL+S+A + E
Sbjct: 199 AAGCASSHFRQLRSCRSRLLSAAAAGE 119
Score = 114 bits (243), Expect(3) = 9e-047
Identities = 46/74 (62%), Positives = 50/74 (67%)
Frame = +1 / +3
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LPDGF AA GRG V+EWAPQ+EVL HPAV G TH GWNST ES+ EGVPML RP D
Sbjct: 345 LPDGFEAATSGRGMVVEWAPQEEVLRHPAVAGFWTHGGWNSTTESVCEGVPMLCRPHLXD 524
Query: 586 QXPTXXYVCDVWXI 627
Q V VW +
Sbjct: 525 QMGNARDVKHVWKV 566
Score = 80.2 bits (169), Expect(3) = 9e-047
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = +1 / +3
Query: 193 ADETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
A E+SLL QDR C++WLDA+ SVLYVSFGS+ ++ +LVE AWG+A S VPF
Sbjct: 132 AAESSLLRQDRSCLKWLDAQPAASVLYVSFGSLACMSARDLVETAWGIAGSRVPF 296
Score = 31.2 bits (62), Expect(3) = 9e-047
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1 / +3
Query: 52 SSGAILNTFEDLESRELEMIRDEL 123
SSG ILNTF+ LE EL +R +L
Sbjct: 9 SSGIILNTFDALERPELAKLRRDL 80
>gb|BF622731.2|BF622731 HVSMEa0008E02f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008E02f, mRNA sequence
Length = 718
Score = 101 bits (216), Expect(3) = 4e-040
Identities = 39/76 (51%), Positives = 48/76 (63%)
Frame = +1 / +2
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP+ F+A GRG + W PQQEVL HPAVG TH+GWNS LES++ GVP++S P
Sbjct: 413 DAAVLPEEFLAETAGRGLMASWCPQQEVLNHPAVGAFLTHSGWNSALESLFGGVPVISWP 592
Query: 574 IFGDQXPTXXYVCDVW 621
F DQ C+ W
Sbjct: 593 FFADQQTNCRSQCNEW 640
Score = 71.0 bits (149), Expect(3) = 4e-040
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +2
Query: 205 SLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
SL + C++WLD R PGSV+YV+FGS+ +T ++VE AWGLA SG F
Sbjct: 227 SLWKEQDECLQWLDGRQPGSVVYVNFGSITVMTNAQMVEFAWGLAQSGKQF 379
Score = 70.6 bits (148), Expect(3) = 1e-021
Identities = 35/76 (46%), Positives = 40/76 (52%)
Frame = -2 / -2
Query: 620 HTSHTXXXVGXWSPKMGLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGAHSITLP 441
H+ H + WS K G GTP LSS EF PL V PTAG STSCCG P
Sbjct: 639 HSLHWDLQLVCWSAKNGQLITGTPPNRLSSAEFQPLCVRKAPTAGWFSTSCCGHQEAMSP 460
Query: 440 LPSTAAMNPSGSSCLS 393
P+ +A N SGS+ S
Sbjct: 459 RPAVSARNSSGSTAAS 412
Score = 45.0 bits (92), Expect(3) = 1e-021
Identities = 22/47 (46%), Positives = 27/47 (57%)
Frame = -2 / -2
Query: 344 LFAKPHAISTNSSGVT*TTLPKLTYSTDPGARASSHSMQTRSWLRRL 204
L A PHA ST + V LPKLTY+T+PG SSH + +RL
Sbjct: 366 LCASPHANSTICALVMTVMLPKLTYTTEPGCLPSSHCRHSSCSFQRL 226
Score = 30.3 bits (60), Expect(3) = 4e-040
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1 / +2
Query: 28 RATESTTNSSGAILNTFEDLESRELE 105
R TE T +S ILN F DLE +E
Sbjct: 50 RETERTAGASAVILNRFGDLEGEAVE 127
Score = 24.4 bits (47), Expect(3) = 1e-021
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3 / -3
Query: 79 QTC*GLRRTSSSCSP 35
+TC*G RRT C+P
Sbjct: 101 RTC*G*RRTRRPCAP 57
>gb|BF620291.2|BF620291 HVSMEc0019F18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0019F18f, mRNA sequence
Length = 689
Score = 106 bits (227), Expect = 1e-022
Identities = 55/115 (47%), Positives = 60/115 (52%)
Frame = -2 / -3
Query: 524 FHPL*VXXPPTAG*ASTSCCGAHSITLPLPSTAAMNPSGSSCLSXXXXXXXXXXXXXXXP 345
FHP V P TAG STS CGAHS T+P P AA NPSGS
Sbjct: 663 FHPPCVQNPATAGCGSTSSCGAHSTTIPRPLVAASNPSGSRVSPSAATRPGRTTQRNGTR 484
Query: 344 LFAKPHAISTNSSGVT*TTLPKLTYSTDPGARASSHSMQTRSWLRRLVSSAPSLE 180
L A PHA+ST S LPKLTYSTD ASSH Q RS RL+S+A + E
Sbjct: 483 LPAMPHAVSTRSRADMHARLPKLTYSTDAAGCASSHFRQLRSCRSRLLSAAAAGE 319
Score = 80.2 bits (169), Expect(3) = 5e-037
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = +1 / +2
Query: 193 ADETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
A E+SLL QDR C++WLDA+ SVLYVSFGS+ ++ +LVE AWG+A S VPF
Sbjct: 332 AAESSLLRQDRSCLKWLDAQPAASVLYVSFGSLACMSARDLVETAWGIAGSRVPF 496
Score = 76.1 bits (160), Expect(3) = 5e-037
Identities = 28/39 (71%), Positives = 30/39 (76%)
Frame = +1 / +2
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGW 522
LPDGF AA GRG V+EWAPQ+EVL HPAV G TH GW
Sbjct: 545 LPDGFEAATSGRGMVVEWAPQEEVLPHPAVAGFWTHGGW 661
Score = 36.3 bits (73), Expect(3) = 5e-037
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1 / +2
Query: 4 EIVQKILGRATESTTNSSGAILNTFEDLESRELEMIRDEL 123
++ K+L R + SSG ILNTF+ LE EL +R +L
Sbjct: 161 DLTCKLLERVVGAVKASSGIILNTFDALERPELAKLRRDL 280
>gb|BF628779.2|BF628779 HVSMEb0008B22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008B22f, mRNA sequence
Length = 741
Score = 86.6 bits (183), Expect(2) = 6e-034
Identities = 33/51 (64%), Positives = 41/51 (80%)
Frame = +1 / +3
Query: 205 SLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
SL +DR C+EWLD R PGSV+YV+FGS+ ++ +ELVE AWGLANSG PF
Sbjct: 150 SLWREDRSCLEWLDGREPGSVVYVNFGSITTMSGEELVEFAWGLANSGHPF 302
Score = 77.4 bits (163), Expect(2) = 6e-034
Identities = 31/69 (44%), Positives = 39/69 (56%)
Frame = +1 / +3
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LP F+ A +GR + W Q+ VL HPA+G TH GWNST +I G+PML P F +
Sbjct: 363 LPPEFVEATKGRCLLASWCEQEAVLQHPALGVFLTHCGWNSTFVAISAGLPMLCWPFFAE 542
Query: 586 QXPTXXYVC 612
Q Y C
Sbjct: 543 QQTNSRYAC 569
>gb|BM816260.1|BM816260 HC113E04_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC113E04_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 842
Score = 141 bits (304), Expect = 3e-033
Identities = 59/132 (44%), Positives = 76/132 (57%)
Frame = +1 / +2
Query: 232 MEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPFXXXXXXXXXXXXDKQELP 411
+ WLD + PGSV+YV+FGS+ ++ + L+E AWGLANSG F D LP
Sbjct: 71 LRWLDNQPPGSVVYVNFGSITVMSNEHLLEFAWGLANSGYTFLWNVRPDLVKGHDNAVLP 250
Query: 412 DGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQX 591
F AA E R + W PQ++VL H A+G TH+GWNS+LE I GVPM+ P F +Q
Sbjct: 251 PEFSAATEDRSMLSTWCPQEKVLEHEAIGVFLTHSGWNSSLEGICGGVPMVCWPFFTEQQ 430
Query: 592 PTXXYVCDVWXI 627
Y C W I
Sbjct: 431 TNCRYKCTEWGI 466
>gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags5b03, mRNA sequence
Length = 671
Score = 141 bits (303), Expect = 4e-033
Identities = 59/142 (41%), Positives = 79/142 (55%)
Frame = +1 / +1
Query: 202 TSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPFXXXXXXXX 381
++L + + WLD R P SV+YV+FGS+ ++ + ++E AWGLAN+G F
Sbjct: 73 SNLWKEQDAPLRWLDGRPPRSVVYVNFGSIAVMSKEHMLEFAWGLANTGYAFLWNVRPDL 252
Query: 382 XXXXDKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPM 561
D+ LP F A EGR + W PQ++VL AVG TH+GWNS+LE I GVPM
Sbjct: 253 VKGDDEAALPPEFSTATEGRSMLSTWCPQEKVLEQEAVGVFLTHSGWNSSLEGICGGVPM 432
Query: 562 LSRPIFGDQXPTXXYVCDVWXI 627
+ P F DQ Y C W I
Sbjct: 433 VCWPFFADQQTNCRYKCTEWGI 498
>gb|BJ463253.1|BJ463253 BJ463253 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26i01 5', mRNA sequence
Length = 518
Score = 141 bits (303), Expect = 4e-033
Identities = 59/142 (41%), Positives = 79/142 (55%)
Frame = +1 / +3
Query: 202 TSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPFXXXXXXXX 381
++L + + WLD R P SV+YV+FGS+ ++ + ++E AWGLAN+G F
Sbjct: 36 SNLWKEQDAPLRWLDGRPPRSVVYVNFGSIAVMSKEHMLEFAWGLANTGYAFLWNVRPDL 215
Query: 382 XXXXDKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPM 561
D+ LP F A EGR + W PQ++VL AVG TH+GWNS+LE I GVPM
Sbjct: 216 VKGDDEAALPPEFSTATEGRSMLSTWCPQEKVLEQEAVGVFLTHSGWNSSLEGICGGVPM 395
Query: 562 LSRPIFGDQXPTXXYVCDVWXI 627
+ P F DQ Y C W I
Sbjct: 396 VCWPFFADQQTNCRYKCTEWGI 461
>gb|BF628789.2|BF628789 HVSMEb0008D18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008D18f, mRNA sequence
Length = 769
Score = 86.6 bits (183), Expect(2) = 8e-033
Identities = 33/51 (64%), Positives = 41/51 (80%)
Frame = +1 / +3
Query: 205 SLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
SL +DR C+EWLD R PGSV+YV+FGS+ ++ +ELVE AWGLANSG PF
Sbjct: 150 SLWREDRSCLEWLDGREPGSVVYVNFGSITTMSGEELVEFAWGLANSGHPF 302
Score = 73.8 bits (155), Expect(2) = 8e-033
Identities = 30/69 (43%), Positives = 38/69 (55%)
Frame = +1 / +3
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LP F+ A +GR + W Q+ VL HPA+G TH GWNST +I G+PML P +
Sbjct: 363 LPPEFVEATKGRCLLASWCEQEAVLQHPALGVFLTHCGWNSTFVAISAGLPMLCWPFLRE 542
Query: 586 QXPTXXYVC 612
Q Y C
Sbjct: 543 QQTNSRYAC 569
>gb|BU994619.1|BU994619 HM07K10r HM Hordeum vulgare subsp. vulgare cDNA clone HM07K10
5-PRIME, mRNA sequence
Length = 603
Score = 91.6 bits (194), Expect(2) = 3e-031
Identities = 35/80 (43%), Positives = 47/80 (58%)
Frame = +1 / +3
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP F+ ++EGRG + W PQ+ VL H AVG TH+GWNST++S+ GVP L P
Sbjct: 279 DVAVLPPEFLESIEGRGVLASWCPQEAVLRHEAVGVFLTHSGWNSTVDSLCGGVPTLCWP 458
Query: 574 IFGDQXPTXXYVCDVWXIXV 633
F +Q Y C W + +
Sbjct: 459 FFAEQQTNSRYSCVEWGVAM 518
Score = 63.3 bits (132), Expect(2) = 3e-031
Identities = 24/52 (46%), Positives = 37/52 (71%)
Frame = +1 / +3
Query: 202 TSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
++L +D C +LD + P SV+YV++GS+ ++ +EL+E AWGLANSG F
Sbjct: 90 SNLWKEDVSCFNFLDGKEPRSVVYVNYGSITVMSNEELLEFAWGLANSGQSF 245
>gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105A11_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 872
Score = 81.1 bits (171), Expect(2) = 6e-031
Identities = 32/78 (41%), Positives = 41/78 (52%)
Frame = +1 / +3
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP F+ A +GR + W Q+ V+ H AVG TH GWNS +E + GVPML P
Sbjct: 414 DAAVLPPEFIEATKGRCLLASWCEQEAVMRHEAVGAFLTHCGWNSMMEGLGAGVPMLCWP 593
Query: 574 IFGDQXPTXXYVCDVWXI 627
F +Q Y C W +
Sbjct: 594 FFAEQQTNSRYACVEWGV 647
Score = 72.9 bits (153), Expect(2) = 6e-031
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +1 / +3
Query: 193 ADETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
A +SL +D+ C+EWL R P SV+YV++GSV ++ ELVE AWGLAN G F
Sbjct: 216 AMRSSLWREDQSCLEWLQGREPRSVVYVNYGSVTTMSKQELVEFAWGLANCGYDF 380
>gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16h10 3', mRNA sequence
Length = 669
Score = 97.6 bits (207), Expect(2) = 2e-030
Identities = 37/74 (50%), Positives = 46/74 (62%)
Frame = +1 / -3
Query: 412 DGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQX 591
D F VEG+G V+ WAPQQ VL+HP+V +H GWNST+E + GVP L P F DQ
Sbjct: 400 DAFKRRVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQF 221
Query: 592 PTXXYVCDVWXIXV 633
Y+C+VW V
Sbjct: 220 CNQSYICNVWGTGV 179
Score = 54.6 bits (113), Expect(2) = 2e-030
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +1 / -3
Query: 208 LLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
L +D C+ WLDA+A GSV+YV+FGS +E+A GL +G PF
Sbjct: 601 LWQEDSACLPWLDAQARGSVIYVAFGSFTVFDAARFLELADGLELTGRPF 452
>gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3k12 3', mRNA sequence
Length = 651
Score = 97.6 bits (207), Expect(2) = 2e-030
Identities = 37/74 (50%), Positives = 46/74 (62%)
Frame = +1 / -1
Query: 412 DGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQX 591
D F VEG+G V+ WAPQQ VL+HP+V +H GWNST+E + GVP L P F DQ
Sbjct: 387 DAFKRRVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQF 208
Query: 592 PTXXYVCDVWXIXV 633
Y+C+VW V
Sbjct: 207 CNQSYICNVWGTGV 166
Score = 54.6 bits (113), Expect(2) = 2e-030
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +1 / -1
Query: 208 LLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
L +D C+ WLDA+A GSV+YV+FGS +E+A GL +G PF
Sbjct: 588 LWQEDSACLPWLDAQARGSVIYVAFGSFTVFDAARFLELADGLELTGRPF 439
>gb|BQ763939.1|BQ763939 EBro03_SQ005_G23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_G23 5', mRNA sequence
Length = 594
Score = 88.0 bits (186), Expect(2) = 2e-029
Identities = 35/76 (46%), Positives = 44/76 (57%)
Frame = +1 / +2
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LP GF+ A GRG V W Q+ VL H AV TH+GWNST+E++ GVPML P F +
Sbjct: 191 LPPGFLEATRGRGLVASWCDQEAVLRHDAVCVFLTHSGWNSTVEALCGGVPMLCWPFFAE 370
Query: 586 QXPTXXYVCDVWXIXV 633
Q Y C W + +
Sbjct: 371 QQTNCRYKCVEWGVAM 418
Score = 61.0 bits (127), Expect(2) = 2e-029
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +1 / +2
Query: 223 RVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
+ C+ WLD + SV+YV+FGSV ++ +L E AWGLANSG F
Sbjct: 2 QTCLRWLDGKRRRSVVYVNFGSVTVMSSHDLAEFAWGLANSGQEF 136
>emb|X15694.1|HVBRNZ1H Barley bronze 1 homologue for UDPglucose flavonol 3,0 glucosyl
transferase
Length = 2326
Score = 78.8 bits (166), Expect(2) = 9e-026
Identities = 31/60 (51%), Positives = 34/60 (56%)
Frame = +1 / +2
Query: 442 GKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPTXXYVCDVW 621
G V+ WAPQ VL H AVG TH GW S +E + GVPM RP FGDQ V VW
Sbjct: 1649 GLVVPWAPQVGVLRHAAVGAFVTHAGWASVMEGVSSGVPMACRPFFGDQTMNARSVASVW 1828
Score = 57.8 bits (120), Expect(2) = 9e-026
Identities = 26/55 (47%), Positives = 30/55 (54%)
Frame = +1 / +2
Query: 193 ADETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
AD + C+ WLD R SV YVSFG+ PDEL E+A GL SG PF
Sbjct: 1424 ADTNEAPADPHGCLAWLDRRPARSVAYVSFGTNATARPDELQELAAGLEASGAPF 1588
>gb|CB880150.1|CB880150 HM05K10w HM Hordeum vulgare subsp. vulgare cDNA clone HM05K10
3-PRIME, mRNA sequence
Length = 622
Score = 91.6 bits (194), Expect(2) = 1e-025
Identities = 35/80 (43%), Positives = 47/80 (58%)
Frame = +1 / -2
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP F+ ++EGRG + W PQ+ VL H AVG TH+GWNST++S+ GVP L P
Sbjct: 498 DVAVLPPEFLESIEGRGVLASWCPQEAVLRHEAVGVFLTHSGWNSTVDSLCGGVPTLCWP 319
Query: 574 IFGDQXPTXXYVCDVWXIXV 633
F +Q Y C W + +
Sbjct: 318 FFAEQQTNSRYSCVEWGVAM 259
Score = 44.5 bits (91), Expect(2) = 1e-025
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = +1 / -2
Query: 268 LYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
+YV++GS+ ++ +EL+E AWGLANSG F
Sbjct: 621 VYVNYGSITVMSNEELLEFAWGLANSGQSF 532
>gb|BF260942.2|BF260942 HVSMEf0023F14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023F14f, mRNA sequence
Length = 816
Score = 115 bits (246), Expect = 3e-025
Identities = 50/125 (40%), Positives = 70/125 (56%)
Frame = +1 / +3
Query: 247 ARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPFXXXXXXXXXXXXDKQELPDGFMA 426
++A G+V+YVS GS+ ++ +E E GL ++G PF L D
Sbjct: 3 SQADGTVVYVSLGSLAVISVEEFTEFLSGLVSAGHPFLWVLRPDMVGASQNAVLQDAIRT 182
Query: 427 AVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPTXXY 606
A + + +V+EWAPQ++VL H AVG TH GWNSTLES+ EGVP + P F DQ +
Sbjct: 183 AGKSKARVVEWAPQRDVLRHRAVGCFLTHAGWNSTLESVAEGVPTVCWPFFVDQQINSRF 362
Query: 607 VCDVW 621
+ VW
Sbjct: 363 MGAVW 377
>gb|BF623637.2|BF623637 HVSMEa0003E04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0003E04f, mRNA sequence
Length = 485
Score = 70.1 bits (147), Expect(2) = 5e-025
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = +1 / +1
Query: 457 WAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPTXXYVCDV 618
WAPQ +L H A+GG TH GWNST+E I GVPM++ P F +Q V DV
Sbjct: 322 WAPQVMILWHQAIGGFVTHCGWNSTIEGICAGVPMITWPHFSEQFVNEKLVVDV 483
Score = 64.2 bits (134), Expect(2) = 5e-025
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +1 / +1
Query: 229 CMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
C++WLD+R PGSV++VSFGS+ TP +LVE+ GL S PF
Sbjct: 91 CLQWLDSRKPGSVIFVSFGSLACTTPQQLVELGLGLEASQKPF 219
>gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001A18f, mRNA sequence
Length = 612
Score = 77.0 bits (162), Expect(2) = 8e-025
Identities = 31/59 (52%), Positives = 39/59 (66%)
Frame = +1 / +3
Query: 457 WAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPTXXYVCDVWXIXV 633
WAPQ +L+HPAVGG TH GWN+TLE+I GVP L+ P F DQ + + DV + V
Sbjct: 255 WAPQVTILSHPAVGGFLTHCGWNATLEAISHGVPALTWPNFADQFCSERLLVDVLRVGV 431
Score = 56.4 bits (117), Expect(2) = 8e-025
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +1 / +3
Query: 232 MEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
+ WLDAR P SVLY+SFGS+ + ++ E+A GL SG PF
Sbjct: 24 VSWLDARPPASVLYISFGSIAKLPAKQVAELARGLEASGRPF 149
>gb|BQ768134.1|BQ768134 EBro08_SQ010_E19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_E19 5', mRNA sequence
Length = 469
Score = 71.0 bits (149), Expect(3) = 2e-024
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +1
Query: 205 SLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
SL + C++WLD R PGSV+YV+FGS+ +T ++VE AWGLA SG F
Sbjct: 157 SLWKEQDECLQWLDGRQPGSVVYVNFGSITVMTNAQMVEFAWGLAQSGKQF 309
Score = 55.9 bits (116), Expect(3) = 2e-024
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = +1 / +1
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNG 519
D LP+ F+A GRG + W PQQEVL HPAV TH+G
Sbjct: 343 DAAVLPEEFLAETAGRGLMASWCPQQEVLNHPAVRAFLTHSG 468
Score = 23.0 bits (44), Expect(3) = 2e-024
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1 / +1
Query: 52 SSGAILNTFEDLESRELE 105
+S ILN+F DLE +E
Sbjct: 4 ASAVILNSFGDLEGEAVE 57
>gb|CA028126.1|CA028126 HZ61B05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61B05
5-PRIME, mRNA sequence
Length = 565
Score = 60.1 bits (125), Expect(3) = 2e-023
Identities = 28/78 (35%), Positives = 38/78 (48%)
Frame = +1 / +3
Query: 220 DRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPFXXXXXXXXXXXXDK 399
+R + WLD +AP SV+YVSFGSV P + EI GL + G PF +
Sbjct: 219 ERAIVAWLDKQAPDSVVYVSFGSVARKLPKQQFEIGHGLEHCGRPFLWVVKESELASPES 398
Query: 400 QELPDGFMAAVEGRGKVI 453
+ + A GRG V+
Sbjct: 399 RMWLENLEARTSGRGLVV 452
Score = 59.6 bits (124), Expect(3) = 2e-023
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = +1 / +3
Query: 457 WAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPM 561
WAPQ VL+H +VGG TH GWNS LESI GVP+
Sbjct: 459 WAPQLAVLSHRSVGGFVTHCGWNSVLESIAHGVPV 563
Score = 26.7 bits (52), Expect(3) = 2e-023
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1 / +3
Query: 31 ATESTTNSSGAILNTFEDLESREL 102
A + S GA++NTF DLE + +
Sbjct: 33 AVAAMRTSHGAVINTFLDLEEKSV 104
>gb|BQ466592.1|BQ466592 HT02P16r HT Hordeum vulgare subsp. vulgare cDNA clone HT02P16
5-PRIME, mRNA sequence
Length = 606
Score = 77.9 bits (164), Expect(2) = 4e-023
Identities = 29/56 (51%), Positives = 37/56 (66%)
Frame = +1 / +1
Query: 412 DGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIF 579
D F VEG+G V+ WAPQQ VL+HP++ +H GWNST+E + GVP L P F
Sbjct: 439 DAFKRRVEGKGLVVGWAPQQRVLSHPSIACFVSHCGWNSTMEGLRHGVPFLCWPYF 606
Score = 50.0 bits (103), Expect(2) = 4e-023
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +1 / +1
Query: 208 LLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
L ++ C+ WLDA+A GSV+YV+FGS E+A GL +G PF
Sbjct: 238 LWPEELACLPWLDAQARGSVVYVAFGSFTIFDAARFQELADGLELTGRPF 387
>gb|BI780035.2|BI780035 EBma08_SQ001_D16_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ001_D16 5', mRNA sequence
Length = 582
Score = 70.1 bits (147), Expect(2) = 4e-023
Identities = 27/48 (56%), Positives = 30/48 (62%)
Frame = +1 / +3
Query: 442 GKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
G V+ WAPQ VL H AVG TH GW S +E + GVPM RP FGD
Sbjct: 438 GLVVPWAPQVGVLRHAAVGAFVTHAGWASVMEGVSSGVPMACRPFFGD 581
Score = 57.8 bits (120), Expect(2) = 4e-023
Identities = 26/55 (47%), Positives = 30/55 (54%)
Frame = +1 / +3
Query: 193 ADETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
AD + C+ WLD R SV YVSFG+ PDEL E+A GL SG PF
Sbjct: 210 ADTNEAPADPHGCLAWLDRRPARSVAYVSFGTNATARPDELQELAAGLEASGAPF 374
>gb|AJ462135.1|AJ462135 AJ462135 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200058E12F1, mRNA sequence
Length = 360
Score = 107 bits (228), Expect = 9e-023
Identities = 42/64 (65%), Positives = 46/64 (71%)
Frame = +1 / +2
Query: 436 GRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPTXXYVCD 615
GRG V+EWAPQ+EVL HPAV G TH GWNST ES+ EGVPML RP FGDQ YV
Sbjct: 8 GRGMVVEWAPQEEVLRHPAVAGFWTHGGWNSTTESMCEGVPMLCRPHFGDQMGNARYVEH 187
Query: 616 VWXI 627
VW +
Sbjct: 188 VWKV 199
>gb|BM443110.2|BM443110 EBro02_SQ002_J16_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ002_J16 5', mRNA sequence
Length = 427
Score = 64.2 bits (134), Expect(2) = 9e-023
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +1 / +3
Query: 229 CMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
C++WLD+R PGSV++VSFGS+ TP +LVE+ GL S PF
Sbjct: 78 CLQWLDSRKPGSVIFVSFGSLACTTPQQLVELGLGLEASQKPF 206
Score = 62.3 bits (130), Expect(2) = 9e-023
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = +1 / +3
Query: 457 WAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
WAPQ +L H A+GG TH GWNST+E I GVPM++ P
Sbjct: 309 WAPQVMILWHQAIGGFVTHCGWNSTIEGICAGVPMITWP 425
>gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
5-PRIME, mRNA sequence
Length = 647
Score = 106 bits (227), Expect = 1e-022
Identities = 40/78 (51%), Positives = 50/78 (64%)
Frame = +1 / +3
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP+ F+A GRG + W PQQEVL HPAVG TH+GWNS LES++ GVP++S P
Sbjct: 63 DAAVLPEEFLAETAGRGLMASWCPQQEVLNHPAVGAFLTHSGWNSALESLFGGVPVISWP 242
Query: 574 IFGDQXPTXXYVCDVWXI 627
F DQ Y C+ W +
Sbjct: 243 FFADQQTNCRYQCNEWGV 296
>gb|CA009114.1|CA009114 HU13D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU13D11
5-PRIME, mRNA sequence
Length = 581
Score = 80.2 bits (169), Expect(2) = 2e-022
Identities = 31/59 (52%), Positives = 39/59 (66%)
Frame = +1 / +2
Query: 457 WAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPTXXYVCDVWXIXV 633
WAPQ +LAHPAVGG TH GW STLES+ GVPM++ P+F +Q + DV + V
Sbjct: 287 WAPQVAILAHPAVGGFMTHCGWGSTLESVAAGVPMVTWPLFAEQFVNEKLIVDVLGVGV 463
Score = 45.0 bits (92), Expect(2) = 2e-022
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1 / +2
Query: 223 RVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVP 354
R CM WLD + SV+YVSFGS + P +L+++ L + P
Sbjct: 53 RRCMSWLDGKKAESVVYVSFGSAGCIPPAQLMQLGMALVSCRWP 184
>gb|BI956242.1|BI956242 HVSMEn0001H15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0001H15f, mRNA sequence
Length = 1174
Score = 105 bits (224), Expect = 3e-022
Identities = 48/100 (48%), Positives = 60/100 (60%)
Frame = +1 / +2
Query: 247 ARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPFXXXXXXXXXXXXDKQELPDGFMA 426
A+ GSVLY+SFGS HVT EL EIA G+ SG F D LPDGF+A
Sbjct: 2 AQPAGSVLYISFGSYAHVTKQELHEIAGGVLASGARFLWVMLPDIVSSDDPDPLPDGFVA 181
Query: 427 AVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIY 546
A GRG V+ W Q EVL+H +VGG TH G +S L++++
Sbjct: 182 ASAGRGLVVPWCCQVEVLSHTSVGGFLTHCGRSSELDTLW 301
>gb|BF255421.3|BF255421 HVSMEf0006N01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006N01f, mRNA sequence
Length = 584
Score = 91.6 bits (194), Expect(2) = 4e-022
Identities = 35/80 (43%), Positives = 47/80 (58%)
Frame = +1 / +1
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP F+ ++EGRG + W PQ+ VL H AVG TH+GWNST++S+ GVP L P
Sbjct: 88 DVAVLPPEFLESIEGRGVLASWCPQEAVLRHEAVGVFLTHSGWNSTVDSLCGGVPTLCWP 267
Query: 574 IFGDQXPTXXYVCDVWXIXV 633
F +Q Y C W + +
Sbjct: 268 FFAEQQTNSRYSCVEWGVAM 327
Score = 32.6 bits (65), Expect(2) = 4e-022
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1 / +1
Query: 307 DELVEIAWGLANSGVPF 357
+EL+E AWGLANSG F
Sbjct: 4 EELLEFAWGLANSGQSF 54
>emb|AJ496572.1|HVU496572 Hordeum vulgare partial mRNA for putative glycosyltransferase (sf2
gene)
Length = 863
Score = 68.3 bits (143), Expect(3) = 1e-021
Identities = 26/59 (44%), Positives = 37/59 (62%)
Frame = +1 / +1
Query: 457 WAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPTXXYVCDVWXIXV 633
WAPQ +L+H A+GG TH GWNS LE++ GVPM++ P + DQ V ++ + V
Sbjct: 562 WAPQMLILSHAALGGFVTHCGWNSVLEAVSAGVPMVTWPRYADQFNNEKLVVELLKVGV 738
Score = 53.6 bits (111), Expect(3) = 1e-021
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +1 / +1
Query: 229 CMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
C+ WLDA+ GSV+YVSFG++ P EL ++A L SGV F
Sbjct: 328 CLRWLDAKPAGSVVYVSFGTLTKFAPAELHQLARALDLSGVNF 456
Score = 21.6 bits (41), Expect(3) = 1e-021
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1 / +1
Query: 58 GAILNTFEDLESRELEMIRDELADR 132
G + N+F DLE +E + L R
Sbjct: 169 GEVFNSFHDLEPDYVEHFQKTLGRR 243
>gb|BF622661.2|BF622661 HVSMEa0007K11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0007K11f, mRNA sequence
Length = 697
Score = 73.8 bits (155), Expect(2) = 5e-021
Identities = 30/64 (46%), Positives = 37/64 (57%)
Frame = +1 / +2
Query: 442 GKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPTXXYVCDVW 621
G + W PQ EVLAH A+G TH GWNSTLE++ GVP + P + DQ YV W
Sbjct: 230 GLIGSWCPQLEVLAHRAIGCFITHCGWNSTLEALVNGVPFVGIPHWADQPTIAKYVESAW 409
Query: 622 XIXV 633
+ V
Sbjct: 410 GMGV 421
Score = 46.8 bits (96), Expect(2) = 5e-021
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +1 / +2
Query: 208 LLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
L D CM+WL+ + SV+ VS+G+V + +L E+ GL NS PF
Sbjct: 11 LFISDVECMDWLEIQMNSSVVLVSYGTVSNYDATQLEELGNGLCNSSKPF 160
>gb|CA015634.1|CA015634 HT14O18r HT Hordeum vulgare subsp. vulgare cDNA clone HT14O18
5-PRIME, mRNA sequence
Length = 622
Score = 66.9 bits (140), Expect(2) = 5e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +1 / +2
Query: 457 WAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQ 588
WAPQ +L+H A+GG TH GWNS LE++ GVPM++ P + DQ
Sbjct: 296 WAPQMLILSHAALGGFVTHCGWNSVLEAVSAGVPMVTWPRYADQ 427
Score = 53.6 bits (111), Expect(2) = 5e-021
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +1 / +2
Query: 229 CMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
C+ WLDA+ GSV+YVSFG++ P EL ++A L SGV F
Sbjct: 62 CLRWLDAKPAGSVVYVSFGTLTKFAPAELHQLARALDLSGVNF 190
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.317 0.136 0.413
Matrix: BLOSUM62
Number of Hits to DB: 308,507,664
Number of Sequences: 312970
Number of extensions: 5060576
Number of successful extensions: 79141
Number of sequences better than 1.0e-020: 40
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 8118639010
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)