TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ7h03.xg.2.1
(487 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow st... 213 5e-055
gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow st... 213 5e-055
gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow st... 137 1e-047
gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow st... 137 1e-047
gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow st... 137 1e-047
gb|CK123865.1|CK123865 BES1824105n21 BES1824 Hordeum vulgar... 94 4e-033
gb|CK125568.1|CK125568 BES1824109b06 BES1824 Hordeum vulgar... 94 4e-033
gb|AV926936.1|AV926936 AV926936 K. Sato unpublished cDNA li... 94 4e-033
gb|BQ765063.1|BQ765063 EBca01_SQ005_N18_R carpel, pre-anthe... 94 4e-033
gb|CA032315.1|CA032315 HX12K14r HX Hordeum vulgare subsp. v... 94 4e-033
gb|BM377129.2|BM377129 EBem05_SQ004_D11_R embryo, 14 DPA, n... 94 4e-033
gb|CA025095.1|CA025095 HZ51D05r HZ Hordeum vulgare subsp. v... 94 4e-033
gb|AL505296.1|AL505296 AL505296 Hordeum vulgare Barke roots... 93 7e-033
gb|BG300145.1|BG300145 HVSMEb0010G24f Hordeum vulgare seedl... 93 7e-033
gb|BM369644.2|BM369644 EBem07_SQ004_D10_R embryo, 28 DPA, n... 93 7e-033
gb|BI950605.1|BI950605 HVSMEl0021J24f Hordeum vulgare spike... 92 2e-032
gb|BJ463541.1|BJ463541 BJ463541 K. Sato unpublished cDNA li... 90 5e-032
gb|BQ469637.1|BQ469637 HZ01G16r HZ Hordeum vulgare subsp. v... 94 3e-031
gb|AL505692.1|AL505692 AL505692 Hordeum vulgare Barke roots... 94 2e-030
gb|BU996702.1|BU996702 HM14H14r HM Hordeum vulgare subsp. v... 94 2e-030
gb|BU999728.1|BU999728 HI15I03r HI Hordeum vulgare subsp. v... 94 2e-030
gb|AL506237.1|AL506237 AL506237 Hordeum vulgare Barke devel... 98 5e-030
gb|AW982205.2|AW982205 HVSMEg0002E10f Hordeum vulgare pre-a... 98 7e-030
gb|BQ464047.1|BQ464047 HF01D07T HF Hordeum vulgare subsp. v... 98 7e-030
gb|BQ460388.1|BQ460388 HA09M17r HA Hordeum vulgare subsp. v... 98 7e-030
gb|BJ463425.1|BJ463425 BJ463425 K. Sato unpublished cDNA li... 98 7e-030
gb|BU988629.1|BU988629 HF18D11r HF Hordeum vulgare subsp. v... 98 7e-030
gb|BU997945.1|BU997945 HI09I01r HI Hordeum vulgare subsp. v... 98 7e-030
gb|BQ471999.1|BQ471999 HV04C01r HV Hordeum vulgare subsp. v... 98 7e-030
gb|BM376958.2|BM376958 EBem05_SQ003_L10_R embryo, 14 DPA, n... 97 1e-029
gb|BM376791.2|BM376791 EBem05_SQ003_E02_R embryo, 14 DPA, n... 95 3e-029
gb|BM373914.2|BM373914 EBma03_SQ003_B17_R maternal, 8 DPA, ... 97 6e-029
gb|BM372397.2|BM372397 EBro03_SQ004_N12_R root, 3 week, wat... 74 3e-027
gb|BU977218.1|BU977218 HA11A17r HA Hordeum vulgare subsp. v... 94 1e-026
gb|CA028260.1|CA028260 HZ61H10r HZ Hordeum vulgare subsp. v... 94 1e-026
gb|BM374546.2|BM374546 EBpi03_SQ003_O19_R pistil, 4 DPA, no... 94 2e-025
gb|BM442216.2|BM442216 EBan01_SQ002_I23_R anther, yellow st... 110 5e-024
gb|BJ476245.1|BJ476245 BJ476245 K. Sato unpublished cDNA li... 67 5e-024
gb|BE216049.2|BE216049 HV_CEb0009E03f Hordeum vulgare seedl... 67 9e-024
gb|BQ764615.1|BQ764615 EBca01_SQ004_K11_R carpel, pre-anthe... 74 8e-023
gb|AV919448.1|AV919448 AV919448 K. Sato unpublished cDNA li... 74 8e-023
gb|AV918472.1|AV918472 AV918472 K. Sato unpublished cDNA li... 74 8e-023
gb|BU982393.1|BU982393 HA26G16r HA Hordeum vulgare subsp. v... 94 4e-022
gb|BJ465856.1|BJ465856 BJ465856 K. Sato unpublished cDNA li... 70 1e-021
gb|CA017403.1|CA017403 HV05B16r HV Hordeum vulgare subsp. v... 94 1e-021
>gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E04 5', mRNA sequence
Length = 507
Score = 213 bits (460), Expect = 5e-055
Identities = 90/139 (64%), Positives = 95/139 (68%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
SFTGTQ C+ C+K IDLL YHKTCF HCKGILS SYSSM LYCKTH
Sbjct: 73 SFTGTQDKCSACEKTVHFIDLLTADGVIYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTH 252
Query: 251 FEQLFKETGSFSKNFTPXXKSSDKXXLTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTL 430
FEQLFKETGSFSK FTP KS DK LTRAPSKLS+ FSGT AC KTVYPLE +TL
Sbjct: 253 FEQLFKETGSFSKKFTPGNKSGDKSELTRAPSKLSAAFSGTQDKCAACTKTVYPLEKMTL 432
Query: 431 EXXSYHKXXXXXSHGGXXL 487
E +YHK SHGG L
Sbjct: 433 EGDAYHKSCFKCSHGGCIL 489
Score = 154 bits (330), Expect = 4e-037
Identities = 78/139 (56%), Positives = 81/139 (58%)
Frame = -2 / -2
Query: 486 RXXPPCEXLXXLLW*DXXSRVNXSSGYTVFWQAXXLX*VPEXXDDXXXXXXXXXXXSEDX 307
R PP E L LLW SRV SSGYTVF QA L *VPE D S D
Sbjct: 488 RMQPPWEHLKQLLWYASPSRVIFSSGYTVFVQAAHLS*VPEKAADSLLGALVSSLLSPDL 309
Query: 306 XXGVKFLEKLPVSLKSCSKWVLQYXXXSMEE*LXIERIPLQWXXXKHVLW*VXXSXXRRS 127
GV F EKLPVSLKSCSK VLQ SMEE*L IERIPLQW K VLW*+ S RRS
Sbjct: 308 LPGVNFFEKLPVSLKSCSKCVLQ*RTPSMEE*LHIERIPLQWLHLKQVLW*MTPSAVRRS 129
Query: 126 MXXXXLSHSAHXSXVPVKE 70
M SH+ H S VPVK+
Sbjct: 128 MKWTVFSHAEHLSCVPVKD 72
Score = 117 bits (250), Expect = 4e-026
Identities = 63/146 (43%), Positives = 66/146 (45%)
Frame = +3 / +2
Query: 48 RQASAPCLLSPAXRXXARSATRXXXSSTSSXXXXXPTIRHASXXATAKGSSRXXATLPWX 227
R+ S LSPA R AR A R SSTSS T R AS ATAKGSSR A LPW
Sbjct: 50 RRTSPTTCLSPARRTSARRAKRRSTSSTSSRPTASSTTRPASNAATAKGSSRCAAILPWT 229
Query: 228 XXCXXXXXXXXXXXXXXXXXXXXXXXXSLQTRXN*QGPPASYHLXFLVLXIXXQLARKQC 407
+L TR N*QGP ASY L VL I Q ARKQC
Sbjct: 230 VSSTARRTSSSSSRRQGASQRSSHRVTNLATRVN*QGPQASYPLPSPVLKISVQPARKQC 409
Query: 408 TRWXS*LWKXSPTTRXXXXXRTGAXS 485
*LW+ TTR TGA S
Sbjct: 410 IHSKR*LWRAMHTTRAASSAPTGAAS 487
Score = 101 bits (216), Expect = 2e-021
Identities = 50/90 (55%), Positives = 57/90 (63%)
Frame = +1 / +3
Query: 217 FHGXXXVLQDPLRAALQGDRELLQELHAXXXVFRQGXTDKGPQQAIIXXFWYSX*XXSLP 396
FHG +LQD LRAALQGDRELL+E+H ++RQ TDKGP+QAI YS * SL
Sbjct: 219 FHGRCPLLQDALRAALQGDRELLKEVHTG*QIWRQE*TDKGPKQAIRCLLRYSR*VCSLH 398
Query: 397 ENSVPAGXVDSGXXVLPQEXXQXLARGXXP 486
ENSV DSG +PQE Q L RG P
Sbjct: 399 ENSVSTRKDDSGGRCIPQELLQVLPRGLHP 488
Score = 60.6 bits (126), Expect(2) = 5e-021
Identities = 29/51 (56%), Positives = 31/51 (60%)
Frame = -1 / -1
Query: 223 HGRVAXXREDPFAVAXXEACLMVGXXXXXEEVDXXXXLVALRAXXLXAGER 71
HGR+A REDPFAVA EA L+V EEVD L A RA L AGER
Sbjct: 225 HGRIAAHREDPFAVAAFEAGLVVDDAVGREEVDEVDRLFARRALVLRAGER 73
Score = 59.3 bits (123), Expect(2) = 5e-021
Identities = 26/56 (46%), Positives = 30/56 (53%)
Frame = -3 / -3
Query: 485 GXXPRAXXXXXSCGRTXLPESTXPAGTLFSGKLXXYXEYQKXXMIACWGPLSVXPC 318
G PR SCG PES+ TLFS +L Y EY++ IAC GPLSV C
Sbjct: 487 GCSPRGST*SSSCGMHRPPESSFRVDTLFSCRLHTYLEYRRRQRIACLGPLSVHSC 320
>gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_D21 5', mRNA sequence
Length = 633
Score = 213 bits (460), Expect = 5e-055
Identities = 90/139 (64%), Positives = 95/139 (68%)
Frame = +2 / +2
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
SFTGTQ C+ C+K IDLL YHKTCF HCKGILS SYSSM LYCKTH
Sbjct: 71 SFTGTQDKCSACEKTVHFIDLLTADGVIYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTH 250
Query: 251 FEQLFKETGSFSKNFTPXXKSSDKXXLTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTL 430
FEQLFKETGSFSK FTP KS DK LTRAPSKLS+ FSGT AC KTVYPLE +TL
Sbjct: 251 FEQLFKETGSFSKKFTPGNKSGDKSELTRAPSKLSAAFSGTQDKCAACTKTVYPLEKMTL 430
Query: 431 EXXSYHKXXXXXSHGGXXL 487
E +YHK SHGG L
Sbjct: 431 EGDAYHKSCFKCSHGGCIL 487
Score = 154 bits (330), Expect = 4e-037
Identities = 78/139 (56%), Positives = 81/139 (58%)
Frame = -2 / -1
Query: 486 RXXPPCEXLXXLLW*DXXSRVNXSSGYTVFWQAXXLX*VPEXXDDXXXXXXXXXXXSEDX 307
R PP E L LLW SRV SSGYTVF QA L *VPE D S D
Sbjct: 486 RMQPPWEHLKQLLWYASPSRVIFSSGYTVFVQAAHLS*VPEKAADSLLGALVSSLLSPDL 307
Query: 306 XXGVKFLEKLPVSLKSCSKWVLQYXXXSMEE*LXIERIPLQWXXXKHVLW*VXXSXXRRS 127
GV F EKLPVSLKSCSK VLQ SMEE*L IERIPLQW K VLW*+ S RRS
Sbjct: 306 LPGVNFFEKLPVSLKSCSKCVLQ*RTPSMEE*LHIERIPLQWLHLKQVLW*MTPSAVRRS 127
Query: 126 MXXXXLSHSAHXSXVPVKE 70
M SH+ H S VPVK+
Sbjct: 126 MKWTVFSHAEHLSCVPVKD 70
Score = 117 bits (250), Expect = 4e-026
Identities = 63/146 (43%), Positives = 66/146 (45%)
Frame = +3 / +3
Query: 48 RQASAPCLLSPAXRXXARSATRXXXSSTSSXXXXXPTIRHASXXATAKGSSRXXATLPWX 227
R+ S LSPA R AR A R SSTSS T R AS ATAKGSSR A LPW
Sbjct: 48 RRTSPTTCLSPARRTSARRAKRRSTSSTSSRPTASSTTRPASNAATAKGSSRCAAILPWT 227
Query: 228 XXCXXXXXXXXXXXXXXXXXXXXXXXXSLQTRXN*QGPPASYHLXFLVLXIXXQLARKQC 407
+L TR N*QGP ASY L VL I Q ARKQC
Sbjct: 228 VSSTARRTSSSSSRRQGASQRSSHRVTNLATRVN*QGPQASYPLPSPVLRISVQPARKQC 407
Query: 408 TRWXS*LWKXSPTTRXXXXXRTGAXS 485
*LW+ TTR TGA S
Sbjct: 408 IHSKR*LWRAMHTTRAASSAPTGAAS 485
Score = 101 bits (216), Expect = 2e-021
Identities = 50/90 (55%), Positives = 57/90 (63%)
Frame = +1 / +1
Query: 217 FHGXXXVLQDPLRAALQGDRELLQELHAXXXVFRQGXTDKGPQQAIIXXFWYSX*XXSLP 396
FHG +LQD LRAALQGDRELL+E+H ++RQ TDKGP+QAI YS * SL
Sbjct: 217 FHGRCPLLQDALRAALQGDRELLKEVHTG*QIWRQE*TDKGPKQAIRCLLRYSG*VCSLH 396
Query: 397 ENSVPAGXVDSGXXVLPQEXXQXLARGXXP 486
ENSV DSG +PQE Q L RG P
Sbjct: 397 ENSVSTRKDDSGGRCIPQELLQVLPRGLHP 486
Score = 60.6 bits (126), Expect(2) = 7e-021
Identities = 29/51 (56%), Positives = 31/51 (60%)
Frame = -1 / -3
Query: 223 HGRVAXXREDPFAVAXXEACLMVGXXXXXEEVDXXXXLVALRAXXLXAGER 71
HGR+A REDPFAVA EA L+V EEVD L A RA L AGER
Sbjct: 223 HGRIAAHREDPFAVAAFEAGLVVDDAVGREEVDEVDRLFARRALVLRAGER 71
Score = 58.8 bits (122), Expect(2) = 7e-021
Identities = 26/56 (46%), Positives = 30/56 (53%)
Frame = -3 / -2
Query: 485 GXXPRAXXXXXSCGRTXLPESTXPAGTLFSGKLXXYXEYQKXXMIACWGPLSVXPC 318
G PR SCG PES+ TLFS +L Y EY++ IAC GPLSV C
Sbjct: 485 GCSPRGST*SSSCGMHRPPESSFRVDTLFSCRLHTYPEYRRRQRIACLGPLSVHSC 318
>gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_K04 5', mRNA sequence
Length = 647
Score = 137 bits (293), Expect(2) = 1e-047
Identities = 55/84 (65%), Positives = 59/84 (70%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
SFTGTQ C CDK IDLL +YHKTCF HCKG LS +YSSM LYCKTH
Sbjct: 114 SFTGTQDKCKTCDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTH 293
Query: 251 FEQLFKETGSFSKNFTPXXKSSDK 322
FEQLFKETGSFSK FTP KS++K
Sbjct: 294 FEQLFKETGSFSKKFTPGGKSAEK 365
Score = 117 bits (250), Expect(2) = 1e-036
Identities = 53/84 (63%), Positives = 57/84 (67%)
Frame = -2 / -2
Query: 312 DXXXGVKFLEKLPVSLKSCSKWVLQYXXXSMEE*LXIERIPLQWXXXKHVLW*VXXSXXR 133
D GV F EKLPVSLKSCSKWVLQ SMEE*L IER+PLQW KHVLW* S R
Sbjct: 355 DLPPGVNFFEKLPVSLKSCSKWVLQ*RTPSMEE*LHIERVPLQWLHLKHVLW*ETPSAVR 176
Query: 132 RSMXXXXLSHSAHXSXVPVKEDMV 61
RSM LSH H S VPVK+ ++
Sbjct: 175 RSMKWTVLSHVLHLSCVPVKDMVI 104
Score = 72.1 bits (151), Expect(2) = 1e-047
Identities = 31/51 (60%), Positives = 34/51 (66%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
+APSK+SS FSGT ACQKTVYPLE L+LE YHK SHGG L
Sbjct: 375 KAPSKMSSAFSGTQDKCAACQKTVYPLEKLSLEGECYHKGCFKCSHGGCIL 527
Score = 69.8 bits (146), Expect(3) = 4e-025
Identities = 31/51 (60%), Positives = 32/51 (62%)
Frame = +3 / +1
Query: 72 LSPAXRXXARSATRXXXSSTSSXXXXXPTIRHASXXATAKGSSRXXATLPW 224
LSPA R AR ATR SSTSS PT RHAS ATA+G SR TLPW
Sbjct: 115 LSPARRTSARRATRPSTSSTSSPPTASPTTRHASSAATARGPSRCATTLPW 267
Score = 55.1 bits (114), Expect(2) = 1e-036
Identities = 25/45 (55%), Positives = 28/45 (62%)
Frame = -2 / -2
Query: 486 RXXPPCEXLXXLLW*DXXSRVNXSSGYTVFWQAXXLX*VPEXXDD 352
R PPCE L LW* S+ + S+GYTVF QA L *VPE DD
Sbjct: 526 RMQPPCEHLKQPLW*HSPSKDSFSNGYTVF*QAAHLS*VPEKADD 392
Score = 43.2 bits (88), Expect(3) = 4e-025
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +1 / +2
Query: 217 FHGXXXVLQDPLRAALQGDRELLQELHA 300
FHG +LQDP R LQGD ELL+E++A
Sbjct: 260 FHGWCPLLQDPFRTTLQGDGELLKEIYA 343
Score = 38.2 bits (77), Expect(3) = 4e-025
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3 / +1
Query: 345 ASYHLXFLVLXIXXQLARKQCTRWXS*LWKXSPTTRXXXXXRTGAXS 485
A HL L L I + +K CT W S W+ + TTR R A S
Sbjct: 385 ARCHLPSLELRINVRPVKKPCTHWRSYPWRENATTRAASSARMVAAS 525
>gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_D10 5', mRNA sequence
Length = 634
Score = 137 bits (293), Expect(2) = 1e-047
Identities = 55/84 (65%), Positives = 59/84 (70%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
SFTGTQ C CDK IDLL +YHKTCF HCKG LS +YSSM LYCKTH
Sbjct: 120 SFTGTQDKCKTCDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTH 299
Query: 251 FEQLFKETGSFSKNFTPXXKSSDK 322
FEQLFKETGSFSK FTP KS++K
Sbjct: 300 FEQLFKETGSFSKKFTPGGKSAEK 371
Score = 117 bits (250), Expect(2) = 1e-036
Identities = 53/84 (63%), Positives = 57/84 (67%)
Frame = -2 / -1
Query: 312 DXXXGVKFLEKLPVSLKSCSKWVLQYXXXSMEE*LXIERIPLQWXXXKHVLW*VXXSXXR 133
D GV F EKLPVSLKSCSKWVLQ SMEE*L IER+PLQW KHVLW* S R
Sbjct: 361 DLPPGVNFFEKLPVSLKSCSKWVLQ*RTPSMEE*LHIERVPLQWLHLKHVLW*ETPSAVR 182
Query: 132 RSMXXXXLSHSAHXSXVPVKEDMV 61
RSM LSH H S VPVK+ ++
Sbjct: 181 RSMKWTVLSHVLHLSCVPVKDMVI 110
Score = 72.1 bits (151), Expect(2) = 1e-047
Identities = 31/51 (60%), Positives = 34/51 (66%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
+APSK+SS FSGT ACQKTVYPLE L+LE YHK SHGG L
Sbjct: 381 KAPSKMSSAFSGTQDKCAACQKTVYPLEKLSLEGECYHKGCFKCSHGGCIL 533
Score = 69.8 bits (146), Expect(3) = 4e-025
Identities = 31/51 (60%), Positives = 32/51 (62%)
Frame = +3 / +1
Query: 72 LSPAXRXXARSATRXXXSSTSSXXXXXPTIRHASXXATAKGSSRXXATLPW 224
LSPA R AR ATR SSTSS PT RHAS ATA+G SR TLPW
Sbjct: 121 LSPARRTSARRATRPSTSSTSSPPTASPTTRHASSAATARGPSRCATTLPW 273
Score = 55.1 bits (114), Expect(2) = 1e-036
Identities = 25/45 (55%), Positives = 28/45 (62%)
Frame = -2 / -1
Query: 486 RXXPPCEXLXXLLW*DXXSRVNXSSGYTVFWQAXXLX*VPEXXDD 352
R PPCE L LW* S+ + S+GYTVF QA L *VPE DD
Sbjct: 532 RMQPPCEHLKQPLW*HSPSKDSFSNGYTVF*QAAHLS*VPEKADD 398
Score = 43.2 bits (88), Expect(3) = 4e-025
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +1 / +2
Query: 217 FHGXXXVLQDPLRAALQGDRELLQELHA 300
FHG +LQDP R LQGD ELL+E++A
Sbjct: 266 FHGWCPLLQDPFRTTLQGDGELLKEIYA 349
Score = 38.2 bits (77), Expect(3) = 4e-025
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3 / +1
Query: 345 ASYHLXFLVLXIXXQLARKQCTRWXS*LWKXSPTTRXXXXXRTGAXS 485
A HL L L I + +K CT W S W+ + TTR R A S
Sbjct: 391 ARCHLPSLELRINVRPVKKPCTHWRSYPWRENATTRAASSARMVAAS 531
>gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_I18 5', mRNA sequence
Length = 598
Score = 137 bits (293), Expect(2) = 1e-047
Identities = 55/84 (65%), Positives = 59/84 (70%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
SFTGTQ C CDK IDLL +YHKTCF HCKG LS +YSSM LYCKTH
Sbjct: 123 SFTGTQDKCKTCDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTH 302
Query: 251 FEQLFKETGSFSKNFTPXXKSSDK 322
FEQLFKETGSFSK FTP KS++K
Sbjct: 303 FEQLFKETGSFSKKFTPGGKSAEK 374
Score = 117 bits (250), Expect(2) = 1e-036
Identities = 53/84 (63%), Positives = 57/84 (67%)
Frame = -2 / -1
Query: 312 DXXXGVKFLEKLPVSLKSCSKWVLQYXXXSMEE*LXIERIPLQWXXXKHVLW*VXXSXXR 133
D GV F EKLPVSLKSCSKWVLQ SMEE*L IER+PLQW KHVLW* S R
Sbjct: 364 DLPPGVNFFEKLPVSLKSCSKWVLQ*RTPSMEE*LHIERVPLQWLHLKHVLW*ETPSAVR 185
Query: 132 RSMXXXXLSHSAHXSXVPVKEDMV 61
RSM LSH H S VPVK+ ++
Sbjct: 184 RSMKWTVLSHVLHLSCVPVKDMVI 113
Score = 72.1 bits (151), Expect(2) = 1e-047
Identities = 31/51 (60%), Positives = 34/51 (66%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
+APSK+SS FSGT ACQKTVYPLE L+LE YHK SHGG L
Sbjct: 384 KAPSKMSSAFSGTQDKCAACQKTVYPLEKLSLEGECYHKGCFKCSHGGCIL 536
Score = 69.8 bits (146), Expect(3) = 4e-025
Identities = 31/51 (60%), Positives = 32/51 (62%)
Frame = +3 / +1
Query: 72 LSPAXRXXARSATRXXXSSTSSXXXXXPTIRHASXXATAKGSSRXXATLPW 224
LSPA R AR ATR SSTSS PT RHAS ATA+G SR TLPW
Sbjct: 124 LSPARRTSARRATRPSTSSTSSPPTASPTTRHASSAATARGPSRCATTLPW 276
Score = 55.1 bits (114), Expect(2) = 1e-036
Identities = 25/45 (55%), Positives = 28/45 (62%)
Frame = -2 / -1
Query: 486 RXXPPCEXLXXLLW*DXXSRVNXSSGYTVFWQAXXLX*VPEXXDD 352
R PPCE L LW* S+ + S+GYTVF QA L *VPE DD
Sbjct: 535 RMQPPCEHLKQPLW*HSPSKDSFSNGYTVF*QAAHLS*VPEKADD 401
Score = 43.2 bits (88), Expect(3) = 4e-025
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +1 / +2
Query: 217 FHGXXXVLQDPLRAALQGDRELLQELHA 300
FHG +LQDP R LQGD ELL+E++A
Sbjct: 269 FHGWCPLLQDPFRTTLQGDGELLKEIYA 352
Score = 38.2 bits (77), Expect(3) = 4e-025
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3 / +1
Query: 345 ASYHLXFLVLXIXXQLARKQCTRWXS*LWKXSPTTRXXXXXRTGAXS 485
A HL L L I + +K CT W S W+ + TTR R A S
Sbjct: 394 ARCHLPSLELRINVRPVKKPCTHWRSYPWRENATTRAASSARMVAAS 534
>gb|CK123865.1|CK123865 BES1824105n21 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N215 5-PRIME, mRNA sequence
Length = 823
Score = 94.1 bits (199), Expect(2) = 4e-033
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +1
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 46 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 225
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 226 EGVPYCKPHFAQLFKETGSYNKSF 297
Score = 66.6 bits (139), Expect(2) = 4e-033
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 346 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 504
>gb|CK125568.1|CK125568 BES1824109b06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B069 5-PRIME, mRNA sequence
Length = 782
Score = 94.1 bits (199), Expect(2) = 4e-033
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +3
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 54 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 233
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 234 EGVPYCKPHFAQLFKETGSYNKSF 305
Score = 66.6 bits (139), Expect(2) = 4e-033
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 354 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 512
>gb|AV926936.1|AV926936 AV926936 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26c07 5', mRNA sequence
Length = 733
Score = 94.1 bits (199), Expect(2) = 4e-033
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +2
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 188 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 367
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 368 EGVPYCKPHFAQLFKETGSYNKSF 439
Score = 66.6 bits (139), Expect(2) = 4e-033
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +2
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 488 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 646
>gb|BQ765063.1|BQ765063 EBca01_SQ005_N18_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_N18 5', mRNA sequence
Length = 716
Score = 94.1 bits (199), Expect(2) = 4e-033
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +1
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 46 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 225
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 226 EGVPYCKPHFAQLFKETGSYNKSF 297
Score = 66.6 bits (139), Expect(2) = 4e-033
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 346 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 504
>gb|CA032315.1|CA032315 HX12K14r HX Hordeum vulgare subsp. vulgare cDNA clone HX12K14
5-PRIME, mRNA sequence
Length = 666
Score = 94.1 bits (199), Expect(2) = 4e-033
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +1
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 178 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 357
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 358 EGVPYCKPHFAQLFKETGSYNKSF 429
Score = 66.6 bits (139), Expect(2) = 4e-033
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 478 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 636
>gb|BM377129.2|BM377129 EBem05_SQ004_D11_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_D11 5', mRNA sequence
Length = 625
Score = 94.1 bits (199), Expect(2) = 4e-033
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +3
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 147 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 326
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 327 EGVPYCKPHFAQLFKETGSYNKSF 398
Score = 66.6 bits (139), Expect(2) = 4e-033
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 447 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 605
>gb|CA025095.1|CA025095 HZ51D05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51D05
5-PRIME, mRNA sequence
Length = 587
Score = 94.1 bits (199), Expect(2) = 4e-033
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +1
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 25 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 204
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 205 EGVPYCKPHFAQLFKETGSYNKSF 276
Score = 66.6 bits (139), Expect(2) = 4e-033
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 325 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 483
>gb|AL505296.1|AL505296 AL505296 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08A11V 5', mRNA sequence
Length = 689
Score = 93.2 bits (197), Expect(2) = 7e-033
Identities = 36/74 (48%), Positives = 43/74 (58%)
Frame = +2 / +2
Query: 74 FTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHF 253
F+GTQ C C K +D L +H+ CF HCK LS SYSS YCK HF
Sbjct: 35 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 214
Query: 254 EQLFKETGSFSKNF 295
QLFKETGS++K+F
Sbjct: 215 AQLFKETGSYNKSF 256
Score = 66.6 bits (139), Expect(2) = 7e-033
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +2
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 305 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 463
>gb|BG300145.1|BG300145 HVSMEb0010G24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010G24f, mRNA sequence
Length = 517
Score = 93.2 bits (197), Expect(2) = 7e-033
Identities = 36/74 (48%), Positives = 43/74 (58%)
Frame = +2 / +3
Query: 74 FTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHF 253
F+GTQ C C K +D L +H+ CF HCK LS SYSS YCK HF
Sbjct: 24 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 203
Query: 254 EQLFKETGSFSKNF 295
QLFKETGS++K+F
Sbjct: 204 AQLFKETGSYNKSF 245
Score = 66.6 bits (139), Expect(2) = 7e-033
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 294 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 452
>gb|BM369644.2|BM369644 EBem07_SQ004_D10_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_D10 5', mRNA sequence
Length = 512
Score = 93.2 bits (197), Expect(2) = 7e-033
Identities = 36/74 (48%), Positives = 43/74 (58%)
Frame = +2 / +1
Query: 74 FTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHF 253
F+GTQ C C K +D L +H+ CF HCK LS SYSS YCK HF
Sbjct: 19 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 198
Query: 254 EQLFKETGSFSKNF 295
QLFKETGS++K+F
Sbjct: 199 AQLFKETGSYNKSF 240
Score = 66.6 bits (139), Expect(2) = 7e-033
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 289 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 447
>gb|BI950605.1|BI950605 HVSMEl0021J24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0021J24f, mRNA sequence
Length = 865
Score = 91.8 bits (194), Expect(2) = 2e-032
Identities = 36/84 (42%), Positives = 46/84 (54%)
Frame = +2 / +1
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D + +H+ CF HCK LS SYSS
Sbjct: 76 RETTATAATMFSGTQQKCKVCTKTVYPMDQVCTDGAVFHRACFKCHHCKSTLSFSSYSSF 255
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 256 EGVPYCKPHFAQLFKETGSYNKSF 327
Score = 66.6 bits (139), Expect(2) = 2e-032
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 376 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 534
>gb|BJ463541.1|BJ463541 BJ463541 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32g17 5', mRNA sequence
Length = 604
Score = 90.4 bits (191), Expect(2) = 5e-032
Identities = 35/73 (47%), Positives = 42/73 (57%)
Frame = +2 / +3
Query: 77 TGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHFE 256
+GTQ C C K +D L +H+ CF HCK LS SYSS YCK HF
Sbjct: 51 SGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHFA 230
Query: 257 QLFKETGSFSKNF 295
QLFKETGS++K+F
Sbjct: 231 QLFKETGSYNKSF 269
Score = 66.6 bits (139), Expect(2) = 5e-032
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 318 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 476
>gb|BQ469637.1|BQ469637 HZ01G16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01G16
5-PRIME, mRNA sequence
Length = 509
Score = 94.1 bits (199), Expect(2) = 3e-031
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +1
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 64 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 243
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 244 EGVPYCKPHFAQLFKETGSYNKSF 315
Score = 60.2 bits (125), Expect(2) = 3e-031
Identities = 25/48 (52%), Positives = 29/48 (60%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSH 472
LTR+PSK + FSGT C KT YPLE +T+E SYHK SH
Sbjct: 364 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSH 507
>gb|AL505692.1|AL505692 AL505692 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09D21V 5', mRNA sequence
Length = 470
Score = 94.1 bits (199), Expect(2) = 2e-030
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +1
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 34 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 213
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 214 EGVPYCKPHFAQLFKETGSYNKSF 285
Score = 57.4 bits (119), Expect(2) = 2e-030
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHK 451
LTR+PSK + FSGT C KT YPLE +T+E SYHK
Sbjct: 334 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHK 456
>gb|BU996702.1|BU996702 HM14H14r HM Hordeum vulgare subsp. vulgare cDNA clone HM14H14
5-PRIME, mRNA sequence
Length = 558
Score = 94.1 bits (199), Expect(2) = 2e-030
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +3
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 117 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 296
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 297 EGVPYCKPHFAQLFKETGSYNKSF 368
Score = 57.4 bits (119), Expect(2) = 2e-030
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHK 451
LTR+PSK + FSGT C KT YPLE +T+E SYHK
Sbjct: 417 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHK 539
>gb|BU999728.1|BU999728 HI15I03r HI Hordeum vulgare subsp. vulgare cDNA clone HI15I03
5-PRIME, mRNA sequence
Length = 543
Score = 94.1 bits (199), Expect(2) = 2e-030
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +2
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 116 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 295
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 296 EGVPYCKPHFAQLFKETGSYNKSF 367
Score = 57.4 bits (119), Expect(2) = 2e-030
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +2 / +2
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHK 451
LTR+PSK + FSGT C KT YPLE +T+E SYHK
Sbjct: 416 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHK 538
>gb|AL506237.1|AL506237 AL506237 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02H15T 5',
mRNA sequence
Length = 697
Score = 98.2 bits (208), Expect(2) = 5e-030
Identities = 37/81 (45%), Positives = 44/81 (54%)
Frame = +2 / +3
Query: 53 GVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXX 232
G +SF GT C CDK +D L YHK CF HCKG L +Y+S
Sbjct: 39 GEAXATSFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGV 218
Query: 233 LYCKTHFEQLFKETGSFSKNF 295
LYC+ HF+QLFK TGS K+F
Sbjct: 219 LYCRPHFDQLFKRTGSLDKSF 281
Score = 51.9 bits (107), Expect(2) = 5e-030
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / +3
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 339 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 470
>gb|AW982205.2|AW982205 HVSMEg0002E10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002E10f, mRNA sequence
Length = 828
Score = 97.7 bits (207), Expect(2) = 7e-030
Identities = 37/81 (45%), Positives = 44/81 (54%)
Frame = +2 / +1
Query: 53 GVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXX 232
G +SF GT C CDK +D L YHK CF HCKG L +Y+S
Sbjct: 163 GEAMATSFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGV 342
Query: 233 LYCKTHFEQLFKETGSFSKNF 295
LYC+ HF+QLFK TGS K+F
Sbjct: 343 LYCRPHFDQLFKRTGSLDKSF 405
Score = 51.9 bits (107), Expect(2) = 7e-030
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / +1
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 463 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 594
>gb|BQ464047.1|BQ464047 HF01D07T HF Hordeum vulgare subsp. vulgare cDNA clone HF01D07
5-PRIME, mRNA sequence
Length = 679
Score = 97.7 bits (207), Expect(2) = 7e-030
Identities = 37/81 (45%), Positives = 44/81 (54%)
Frame = +2 / +2
Query: 53 GVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXX 232
G +SF GT C CDK +D L YHK CF HCKG L +Y+S
Sbjct: 98 GEAMATSFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGV 277
Query: 233 LYCKTHFEQLFKETGSFSKNF 295
LYC+ HF+QLFK TGS K+F
Sbjct: 278 LYCRPHFDQLFKRTGSLDKSF 340
Score = 51.9 bits (107), Expect(2) = 7e-030
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / +2
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 398 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 529
>gb|BQ460388.1|BQ460388 HA09M17r HA Hordeum vulgare subsp. vulgare cDNA clone HA09M17
5-PRIME, mRNA sequence
Length = 635
Score = 97.7 bits (207), Expect(2) = 7e-030
Identities = 37/81 (45%), Positives = 44/81 (54%)
Frame = +2 / +2
Query: 53 GVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXX 232
G +SF GT C CDK +D L YHK CF HCKG L +Y+S
Sbjct: 53 GEAMATSFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGV 232
Query: 233 LYCKTHFEQLFKETGSFSKNF 295
LYC+ HF+QLFK TGS K+F
Sbjct: 233 LYCRPHFDQLFKRTGSLDKSF 295
Score = 51.9 bits (107), Expect(2) = 7e-030
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / +2
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 353 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 484
>gb|BJ463425.1|BJ463425 BJ463425 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27k10 5', mRNA sequence
Length = 634
Score = 97.7 bits (207), Expect(2) = 7e-030
Identities = 37/81 (45%), Positives = 44/81 (54%)
Frame = +2 / +2
Query: 53 GVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXX 232
G +SF GT C CDK +D L YHK CF HCKG L +Y+S
Sbjct: 83 GEAMATSFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGV 262
Query: 233 LYCKTHFEQLFKETGSFSKNF 295
LYC+ HF+QLFK TGS K+F
Sbjct: 263 LYCRPHFDQLFKRTGSLDKSF 325
Score = 51.9 bits (107), Expect(2) = 7e-030
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / +2
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 383 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 514
>gb|BU988629.1|BU988629 HF18D11r HF Hordeum vulgare subsp. vulgare cDNA clone HF18D11
5-PRIME, mRNA sequence
Length = 631
Score = 97.7 bits (207), Expect(2) = 7e-030
Identities = 37/81 (45%), Positives = 44/81 (54%)
Frame = +2 / +3
Query: 53 GVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXX 232
G +SF GT C CDK +D L YHK CF HCKG L +Y+S
Sbjct: 183 GEAMATSFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGV 362
Query: 233 LYCKTHFEQLFKETGSFSKNF 295
LYC+ HF+QLFK TGS K+F
Sbjct: 363 LYCRPHFDQLFKRTGSLDKSF 425
Score = 51.9 bits (107), Expect(2) = 7e-030
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / +3
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 483 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 614
>gb|BU997945.1|BU997945 HI09I01r HI Hordeum vulgare subsp. vulgare cDNA clone HI09I01
5-PRIME, mRNA sequence
Length = 584
Score = 97.7 bits (207), Expect(2) = 7e-030
Identities = 37/81 (45%), Positives = 44/81 (54%)
Frame = +2 / +3
Query: 53 GVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXX 232
G +SF GT C CDK +D L YHK CF HCKG L +Y+S
Sbjct: 36 GEAMATSFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGV 215
Query: 233 LYCKTHFEQLFKETGSFSKNF 295
LYC+ HF+QLFK TGS K+F
Sbjct: 216 LYCRPHFDQLFKRTGSLDKSF 278
Score = 51.9 bits (107), Expect(2) = 7e-030
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / +3
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 336 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 467
>gb|BQ471999.1|BQ471999 HV04C01r HV Hordeum vulgare subsp. vulgare cDNA clone HV04C01
5-PRIME, mRNA sequence
Length = 572
Score = 97.7 bits (207), Expect(2) = 7e-030
Identities = 37/81 (45%), Positives = 44/81 (54%)
Frame = +2 / +2
Query: 53 GVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXX 232
G +SF GT C CDK +D L YHK CF HCKG L +Y+S
Sbjct: 62 GEAMATSFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGV 241
Query: 233 LYCKTHFEQLFKETGSFSKNF 295
LYC+ HF+QLFK TGS K+F
Sbjct: 242 LYCRPHFDQLFKRTGSLDKSF 304
Score = 51.9 bits (107), Expect(2) = 7e-030
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / +2
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 362 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 493
>gb|BM376958.2|BM376958 EBem05_SQ003_L10_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_L10 5', mRNA sequence
Length = 464
Score = 96.8 bits (205), Expect(2) = 1e-029
Identities = 36/76 (47%), Positives = 43/76 (56%)
Frame = +2 / +3
Query: 68 SSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKT 247
+SF GT C CDK +D L YHK CF HCKG L +Y+S LYC+
Sbjct: 15 TSFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRP 194
Query: 248 HFEQLFKETGSFSKNF 295
HF+QLFK TGS K+F
Sbjct: 195 HFDQLFKRTGSLDKSF 242
Score = 51.9 bits (107), Expect(2) = 1e-029
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / +3
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 300 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 431
>gb|BM376791.2|BM376791 EBem05_SQ003_E02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_E02 5', mRNA sequence
Length = 646
Score = 95.5 bits (202), Expect(2) = 3e-029
Identities = 36/81 (44%), Positives = 44/81 (54%)
Frame = +2 / +1
Query: 53 GVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXX 232
G +SF GT C CDK +D L +HK CF HCKG L +Y+S
Sbjct: 52 GEAMATSFQGTTTKCNACDKTVYLVDKLTADNRVHHKACFRCHHCKGTLKLANYNSFEGV 231
Query: 233 LYCKTHFEQLFKETGSFSKNF 295
LYC+ HF+QLFK TGS K+F
Sbjct: 232 LYCRPHFDQLFKRTGSLDKSF 294
Score = 51.9 bits (107), Expect(2) = 3e-029
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / +1
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 352 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 483
>gb|BM373914.2|BM373914 EBma03_SQ003_B17_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_B17 5', mRNA sequence
Length = 631
Score = 97.3 bits (206), Expect(2) = 6e-029
Identities = 37/81 (45%), Positives = 44/81 (54%)
Frame = +2 / +1
Query: 53 GVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXX 232
G +SF GT C CDK +D L YHK CF HCKG L +Y+S
Sbjct: 55 GEAMATSFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFWCHHCKGTLKLANYNSFEGV 234
Query: 233 LYCKTHFEQLFKETGSFSKNF 295
LYC+ HF+QLFK TGS K+F
Sbjct: 235 LYCRPHFDQLFKRTGSLDKSF 297
Score = 49.2 bits (101), Expect(2) = 6e-029
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +2 / +1
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHG 475
K+SS F+GT C KTVYP+E +T+ YHK HG
Sbjct: 355 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHG 483
>gb|BM372397.2|BM372397 EBro03_SQ004_N12_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_N12 5', mRNA sequence
Length = 581
Score = 74.4 bits (156), Expect(2) = 3e-027
Identities = 28/54 (51%), Positives = 33/54 (61%)
Frame = +2 / +2
Query: 134 LXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHFEQLFKETGSFSKNF 295
L +H+ CF HCK LS SYSS YCK HF QLFKETGS++K+F
Sbjct: 5 LSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHFAQLFKETGSYNKSF 166
Score = 66.6 bits (139), Expect(2) = 3e-027
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +2
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 215 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 373
>gb|BU977218.1|BU977218 HA11A17r HA Hordeum vulgare subsp. vulgare cDNA clone HA11A17
5-PRIME, mRNA sequence
Length = 558
Score = 94.1 bits (199), Expect(2) = 1e-026
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +1
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 157 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 336
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 337 EGVPYCKPHFAQLFKETGSYNKSF 408
Score = 45.1 bits (92), Expect(2) = 1e-026
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTL 430
LTR+PSK + FSGT C KT YPLE +T+
Sbjct: 457 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTV 558
>gb|CA028260.1|CA028260 HZ61H10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61H10
5-PRIME, mRNA sequence
Length = 556
Score = 94.1 bits (199), Expect(2) = 1e-026
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +2
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 155 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 334
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 335 EGVPYCKPHFAQLFKETGSYNKSF 406
Score = 45.1 bits (92), Expect(2) = 1e-026
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2 / +2
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTL 430
LTR+PSK + FSGT C KT YPLE +T+
Sbjct: 455 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTV 556
>gb|BM374546.2|BM374546 EBpi03_SQ003_O19_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_O19 5', mRNA sequence
Length = 452
Score = 94.1 bits (199), Expect(2) = 2e-025
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +1
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 64 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 243
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 244 EGVPYCKPHFPQLFKETGSYNKSF 315
Score = 40.0 bits (81), Expect(2) = 2e-025
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPL 415
LTR+PSK + FSGT C KT YPL
Sbjct: 364 LTRSPSKAAGMFSGTQDKCATCGKTAYPL 450
>gb|BM442216.2|BM442216 EBan01_SQ002_I23_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_I23 5', mRNA sequence
Length = 284
Score = 110 bits (235), Expect = 5e-024
Identities = 44/75 (58%), Positives = 48/75 (64%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GTQ C C+K IDLL YHK CF HCK LS SYSSM L+CKTH
Sbjct: 52 TFYGTQDKCKACNKTVHFIDLLTADSVPYHKYCFKCSHCKSTLSMCSYSSMDGVLFCKTH 231
Query: 251 FEQLFKETGSFSKNF 295
FEQLFKETG+F KNF
Sbjct: 232 FEQLFKETGTFKKNF 276
>gb|BJ476245.1|BJ476245 BJ476245 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal33a06 3', mRNA sequence
Length = 688
Score = 66.6 bits (139), Expect(2) = 5e-024
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / -2
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 513 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 355
Score = 63.4 bits (132), Expect(2) = 5e-024
Identities = 25/42 (59%), Positives = 28/42 (66%)
Frame = +2 / -2
Query: 170 FXXXHCKGILSXXSYSSMXXXLYCKTHFEQLFKETGSFSKNF 295
F HCK LS SYSS YCK HF QLFKETGS++K+F
Sbjct: 687 FKCHHCKSTLSFSSYSSFEGVPYCKPHFAQLFKETGSYNKSF 562
>gb|BE216049.2|BE216049 HV_CEb0009E03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009E03f, mRNA sequence
Length = 652
Score = 66.6 bits (139), Expect(2) = 9e-024
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
LTR+PSK + FSGT C KT YPLE +T+E SYHK SHGG L
Sbjct: 184 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAL 342
Score = 62.5 bits (130), Expect(2) = 9e-024
Identities = 24/38 (63%), Positives = 27/38 (71%)
Frame = +2 / +1
Query: 182 HCKGILSXXSYSSMXXXLYCKTHFEQLFKETGSFSKNF 295
HCK LS SYSS YCK HF QLFKETGS++K+F
Sbjct: 22 HCKSTLSFSSYSSFEGVPYCKPHFAQLFKETGSYNKSF 135
>gb|BQ764615.1|BQ764615 EBca01_SQ004_K11_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_K11 5', mRNA sequence
Length = 746
Score = 73.9 bits (155), Expect(2) = 8e-023
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +2 / +3
Query: 155 YHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHFEQLFKETGSFSKNF 295
YHK CF HCKG L +Y+S LYC+ HF+QLFK TGS K+F
Sbjct: 99 YHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQLFKRTGSLDKSF 239
Score = 51.9 bits (107), Expect(2) = 8e-023
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / +3
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 297 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 428
>gb|AV919448.1|AV919448 AV919448 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b09 3', mRNA sequence
Length = 687
Score = 73.9 bits (155), Expect(2) = 8e-023
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +2 / -3
Query: 155 YHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHFEQLFKETGSFSKNF 295
YHK CF HCKG L +Y+S LYC+ HF+QLFK TGS K+F
Sbjct: 670 YHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQLFKRTGSLDKSF 530
Score = 51.9 bits (107), Expect(2) = 8e-023
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / -3
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 472 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 341
>gb|AV918472.1|AV918472 AV918472 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21c22 3', mRNA sequence
Length = 668
Score = 73.9 bits (155), Expect(2) = 8e-023
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +2 / -3
Query: 155 YHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHFEQLFKETGSFSKNF 295
YHK CF HCKG L +Y+S LYC+ HF+QLFK TGS K+F
Sbjct: 660 YHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQLFKRTGSLDKSF 520
Score = 51.9 bits (107), Expect(2) = 8e-023
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / -3
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 462 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 331
>gb|BU982393.1|BU982393 HA26G16r HA Hordeum vulgare subsp. vulgare cDNA clone HA26G16
5-PRIME, mRNA sequence
Length = 417
Score = 93.6 bits (198), Expect(2) = 4e-022
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +2
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 44 RETTATAATLFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 223
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 224 EGVPYCKPHFAQLFKETGSYNKSF 295
Score = 29.5 bits (58), Expect(2) = 4e-022
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2 / +2
Query: 329 LTRAPSKLSSXFSGTXXXXXACQK 400
LTR+PSK + FSGT C K
Sbjct: 344 LTRSPSKAAGMFSGTQDKCATCGK 415
>gb|BJ465856.1|BJ465856 BJ465856 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27k10 3', mRNA sequence
Length = 658
Score = 70.3 bits (147), Expect(2) = 1e-021
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = +2 / -3
Query: 158 HKTCFXXXHCKGILSXXSYSSMXXXLYCKTHFEQLFKETGSFSKNF 295
HK CF HCKG L +Y+S LYC+ HF+QLFK TGS K+F
Sbjct: 656 HKACFRCHHCKGTLKLANYNSXEGVLYCRPHFDQLFKRTGSLDKSF 519
Score = 51.9 bits (107), Expect(2) = 1e-021
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / -3
Query: 347 KLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
K+SS F+GT C KTVYP+E +T+ YHK HGG
Sbjct: 461 KVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCCHGG 330
>gb|CA017403.1|CA017403 HV05B16r HV Hordeum vulgare subsp. vulgare cDNA clone HV05B16
5-PRIME, mRNA sequence
Length = 500
Score = 94.1 bits (199), Expect(2) = 1e-021
Identities = 37/84 (44%), Positives = 46/84 (54%)
Frame = +2 / +2
Query: 44 RQAGVGTMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSM 223
R+ + F+GTQ C C K +D L +H+ CF HCK LS SYSS
Sbjct: 134 RETTATAATMFSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSF 313
Query: 224 XXXLYCKTHFEQLFKETGSFSKNF 295
YCK HF QLFKETGS++K+F
Sbjct: 314 EGVPYCKPHFAQLFKETGSYNKSF 385
Score = 28.1 bits (55), Expect(2) = 1e-021
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2 / +2
Query: 329 LTRAPSKLSSXFSGTXXXXXAC 394
LTR+PSK + FSGT C
Sbjct: 434 LTRSPSKAAGMFSGTQDKCATC 499
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 158,585,319
Number of Sequences: 312970
Number of extensions: 1471578
Number of successful extensions: 31519
Number of sequences better than 1.0e-020: 59
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 4742994369
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)