TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ2b01.yg.2.1
(541 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV836714.1|AV836714 AV836714 K. Sato unpublished cDNA li... 141 4e-037
>gb|AV836714.1|AV836714 AV836714 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd26p01, mRNA
sequence
Length = 635
Score = 141 bits (303), Expect(2) = 4e-037
Identities = 55/90 (61%), Positives = 77/90 (85%)
Frame = +3 / +3
Query: 12 LXNDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPKDVL 191
L N+VLD+AKIE+GKLEL+AVP D+R + DD++SLF K++EK +ELAV+V D VP+ ++
Sbjct: 93 LINEVLDQAKIESGKLELDAVPLDVRLVCDDILSLFCGKAQEKGLELAVYVSDQVPQTLI 272
Query: 192 GDPWRFRQILTNLVGNAVKFTERGHVFVRV 281
GDP R RQI+TNL+GN++KFTERGH+++ V
Sbjct: 273 GDPNRMRQIITNLMGNSIKFTERGHIYLTV 362
Score = 32.7 bits (65), Expect(2) = 4e-037
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3 / +3
Query: 354 VDSTTNGAFNTLSGFEAAXXRNSWQYFXM 440
V++ +NTLSG E A R SWQ F +
Sbjct: 396 VETEIQNTYNTLSGCEVAKRRLSWQSFRL 482
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 201,798,115
Number of Sequences: 312970
Number of extensions: 2777413
Number of successful extensions: 35200
Number of sequences better than 1.0e-020: 2
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 5512128591
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)