TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAO3g02.yg.2.1
(344 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV936335.1|AV936335 AV936335 K. Sato unpublished cDNA li... 172 5e-043
gb|CB880964.1|CB880964 HM08F20w HM Hordeum vulgare subsp. v... 172 5e-043
gb|CB882449.1|CB882449 HL01O07w HL Hordeum vulgare subsp. v... 172 5e-043
gb|CD663353.1|CD663353 UCRHV18_05ah10_b1 Drought-stressed D... 172 5e-043
gb|BQ664207.1|BQ664207 HV02F10u HV Hordeum vulgare subsp. v... 144 2e-034
gb|CA010449.1|CA010449 HT09N07u HT Hordeum vulgare subsp. v... 142 9e-034
gb|AV928420.1|AV928420 AV928420 K. Sato unpublished cDNA li... 137 2e-032
gb|AV911026.1|AV911026 AV911026 K. Sato unpublished cDNA li... 124 2e-028
gb|BJ474523.1|BJ474523 BJ474523 K. Sato unpublished cDNA li... 117 2e-026
gb|BF625611.2|BF625611 HVSMEa0011O14f Hordeum vulgare seedl... 68 5e-024
gb|CD662384.1|CD662384 UCRHV18_02aa05_b1 Drought-stressed D... 68 8e-024
gb|AV928554.1|AV928554 AV928554 K. Sato unpublished cDNA li... 68 8e-024
>gb|AV936335.1|AV936335 AV936335 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10p08 3', mRNA sequence
Length = 678
Score = 172 bits (371), Expect = 5e-043
Identities = 71/102 (69%), Positives = 77/102 (75%)
Frame = +1 / -3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERLXXXXXXLSD 195
YLF+S NDVSVLP HTIH KCLKEM+EHCQFACPLCS M ERL LS+
Sbjct: 481 YLFESRNDVSVLPCGHTIHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSN 302
Query: 196 SCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTRXI*S 321
S D KMVRILCNDCGA+S+VQFHLIAHKC + SYNTR I*S
Sbjct: 301 SFDDKMVRILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*S 176
Score = 160 bits (345), Expect = 2e-039
Identities = 69/102 (67%), Positives = 75/102 (73%)
Frame = -1 / +3
Query: 320 LQIXRVLYXXXFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRXXXXXXSLSXXXXMX 141
LQI RVLY WHLCAIK NCTSD APQSLHNMRTIL S+E DR SLS M
Sbjct: 177 LQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDMS 356
Query: 140 XXXLEQRGHANWQCSSISFRHFT*MV*XXGRTETSFVESNKY 15
LEQ GHANWQCS ISF+HF+*+V* GRTETSF++SNKY
Sbjct: 357 HTDLEQSGHANWQCSFISFKHFS*IV*PHGRTETSFLDSNKY 482
Score = 113 bits (242), Expect = 3e-025
Identities = 51/102 (50%), Positives = 70/102 (68%)
Frame = -3 / +2
Query: 321 TSNLAGVV*XXILALVRNQMELHI*YCPAVVA*YADHFVITGVRQXXXXXXEPFPXXXHV 142
TSNL GVV* +AL+ N ++LH+*Y PA++A YA+H ++ GV Q + FP HV
Sbjct: 176 TSNLPGVV*LATMALMCN*VKLHL*YRPAIIAQYANHLIVEGV*QSR*FCIQSFPCL*HV 355
Query: 141 XXXXGAKGACKLAVLFHFFQALYMNGMTXRQDGNIICRIEQV 16
GA+ AC+LA+L HFFQA +MN MT RQ+ +II R++QV
Sbjct: 356 THRLGAERACELAMLLHFFQAFFMNCMTTRQNRDIISRLKQV 481
Score = 105 bits (225), Expect = 7e-023
Identities = 46/102 (45%), Positives = 54/102 (52%)
Frame = -2 / +1
Query: 319 FKSXGCCMXXXSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTEXXXXXXAFPXXXXCX 140
FK GCCM GT Q + TA LI PR+ C IC P RS TE FP C
Sbjct: 178 FKFAGCCMTCNYGTYVQLSETAPLIPPRNHCTICEPSYRRRSLTESLVLHPVFPMPLTCH 357
Query: 139 XXXWSKGGMQTGSALPFLSGTLHEWYDXKAGRKHHLSNRTST 14
WS+ GM+ G+A FLS HE YD A ++HH S +TST
Sbjct: 358 TPTWSRAGMRIGNAPSFLSSIFHELYDHTAEQRHHFSTQTST 483
>gb|CB880964.1|CB880964 HM08F20w HM Hordeum vulgare subsp. vulgare cDNA clone HM08F20
3-PRIME, mRNA sequence
Length = 663
Score = 172 bits (371), Expect = 5e-043
Identities = 71/102 (69%), Positives = 77/102 (75%)
Frame = +1 / -2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERLXXXXXXLSD 195
YLF+S NDVSVLP HTIH KCLKEM+EHCQFACPLCS M ERL LS+
Sbjct: 560 YLFESRNDVSVLPCGHTIHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSN 381
Query: 196 SCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTRXI*S 321
S D KMVRILCNDCGA+S+VQFHLIAHKC + SYNTR I*S
Sbjct: 380 SFDDKMVRILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*S 255
Score = 160 bits (345), Expect = 2e-039
Identities = 69/102 (67%), Positives = 75/102 (73%)
Frame = -1 / +1
Query: 320 LQIXRVLYXXXFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRXXXXXXSLSXXXXMX 141
LQI RVLY WHLCAIK NCTSD APQSLHNMRTIL S+E DR SLS M
Sbjct: 256 LQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDMS 435
Query: 140 XXXLEQRGHANWQCSSISFRHFT*MV*XXGRTETSFVESNKY 15
LEQ GHANWQCS ISF+HF+*+V* GRTETSF++SNKY
Sbjct: 436 HTDLEQSGHANWQCSFISFKHFS*IV*PHGRTETSFLDSNKY 561
Score = 114 bits (244), Expect = 2e-025
Identities = 51/102 (50%), Positives = 71/102 (69%)
Frame = -3 / +3
Query: 321 TSNLAGVV*XXILALVRNQMELHI*YCPAVVA*YADHFVITGVRQXXXXXXEPFPXXXHV 142
TSNL+GVV* +AL+ N ++LH+*Y PA++A YA+H ++ GV Q + FP HV
Sbjct: 255 TSNLSGVV*LATMALMCN*VKLHL*YRPAIIAQYANHLIVEGV*QSR*FCIQSFPCL*HV 434
Query: 141 XXXXGAKGACKLAVLFHFFQALYMNGMTXRQDGNIICRIEQV 16
GA+ AC+LA+L HFFQA +MN MT RQ+ +II R++QV
Sbjct: 435 THRLGAERACELAMLLHFFQAFFMNCMTTRQNRDIISRLKQV 560
Score = 105 bits (224), Expect = 9e-023
Identities = 46/102 (45%), Positives = 54/102 (52%)
Frame = -2 / +2
Query: 319 FKSXGCCMXXXSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTEXXXXXXAFPXXXXCX 140
FK GCCM GT Q + TA LI PR+ C IC P RS TE FP C
Sbjct: 257 FKFVGCCMTCNYGTYVQLSETAPLIPPRNHCTICEPSYRRRSLTESLVLHPVFPMPLTCH 436
Query: 139 XXXWSKGGMQTGSALPFLSGTLHEWYDXKAGRKHHLSNRTST 14
WS+ GM+ G+A FLS HE YD A ++HH S +TST
Sbjct: 437 TPTWSRAGMRIGNAPSFLSSIFHELYDHTAEQRHHFSTQTST 562
>gb|CB882449.1|CB882449 HL01O07w HL Hordeum vulgare subsp. vulgare cDNA clone HL01O07
3-PRIME, mRNA sequence
Length = 593
Score = 172 bits (371), Expect = 5e-043
Identities = 71/102 (69%), Positives = 77/102 (75%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERLXXXXXXLSD 195
YLF+S NDVSVLP HTIH KCLKEM+EHCQFACPLCS M ERL LS+
Sbjct: 196 YLFESRNDVSVLPCGHTIHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSN 375
Query: 196 SCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTRXI*S 321
S D KMVRILCNDCGA+S+VQFHLIAHKC + SYNTR I*S
Sbjct: 376 SFDDKMVRILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*S 501
Score = 160 bits (345), Expect = 2e-039
Identities = 69/102 (67%), Positives = 75/102 (73%)
Frame = -1 / -1
Query: 320 LQIXRVLYXXXFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRXXXXXXSLSXXXXMX 141
LQI RVLY WHLCAIK NCTSD APQSLHNMRTIL S+E DR SLS M
Sbjct: 500 LQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDMS 321
Query: 140 XXXLEQRGHANWQCSSISFRHFT*MV*XXGRTETSFVESNKY 15
LEQ GHANWQCS ISF+HF+*+V* GRTETSF++SNKY
Sbjct: 320 HTDLEQSGHANWQCSFISFKHFS*IV*PHGRTETSFLDSNKY 195
Score = 114 bits (244), Expect = 2e-025
Identities = 51/102 (50%), Positives = 71/102 (69%)
Frame = -3 / -3
Query: 321 TSNLAGVV*XXILALVRNQMELHI*YCPAVVA*YADHFVITGVRQXXXXXXEPFPXXXHV 142
TSNL+GVV* +AL+ N ++LH+*Y PA++A YA+H ++ GV Q + FP HV
Sbjct: 501 TSNLSGVV*LATMALMCN*VKLHL*YRPAIIAQYANHLIVEGV*QSR*FCIQSFPCL*HV 322
Query: 141 XXXXGAKGACKLAVLFHFFQALYMNGMTXRQDGNIICRIEQV 16
GA+ AC+LA+L HFFQA +MN MT RQ+ +II R++QV
Sbjct: 321 THRLGAERACELAMLLHFFQAFFMNCMTTRQNRDIISRLKQV 196
Score = 105 bits (224), Expect = 9e-023
Identities = 46/102 (45%), Positives = 54/102 (52%)
Frame = -2 / -2
Query: 319 FKSXGCCMXXXSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTEXXXXXXAFPXXXXCX 140
FK GCCM GT Q + TA LI PR+ C IC P RS TE FP C
Sbjct: 499 FKFVGCCMTCNYGTYVQLSETAPLIPPRNHCTICEPSYRRRSLTESLVLHPVFPMPLTCH 320
Query: 139 XXXWSKGGMQTGSALPFLSGTLHEWYDXKAGRKHHLSNRTST 14
WS+ GM+ G+A FLS HE YD A ++HH S +TST
Sbjct: 319 TPTWSRAGMRIGNAPSFLSSIFHELYDHTAEQRHHFSTQTST 194
>gb|CD663353.1|CD663353 UCRHV18_05ah10_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05ah10, mRNA sequence
Length = 706
Score = 172 bits (371), Expect = 5e-043
Identities = 71/102 (69%), Positives = 77/102 (75%)
Frame = +1 / -2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERLXXXXXXLSD 195
YLF+S NDVSVLP HTIH KCLKEM+EHCQFACPLCS M ERL LS+
Sbjct: 558 YLFESRNDVSVLPCGHTIHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSN 379
Query: 196 SCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTRXI*S 321
S D KMVRILCNDCGA+S+VQFHLIAHKC + SYNTR I*S
Sbjct: 378 SFDDKMVRILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*S 253
Score = 160 bits (345), Expect = 2e-039
Identities = 69/102 (67%), Positives = 75/102 (73%)
Frame = -1 / +2
Query: 320 LQIXRVLYXXXFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRXXXXXXSLSXXXXMX 141
LQI RVLY WHLCAIK NCTSD APQSLHNMRTIL S+E DR SLS M
Sbjct: 254 LQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDMS 433
Query: 140 XXXLEQRGHANWQCSSISFRHFT*MV*XXGRTETSFVESNKY 15
LEQ GHANWQCS ISF+HF+*+V* GRTETSF++SNKY
Sbjct: 434 HTDLEQSGHANWQCSFISFKHFS*IV*PHGRTETSFLDSNKY 559
Score = 113 bits (242), Expect = 3e-025
Identities = 51/102 (50%), Positives = 70/102 (68%)
Frame = -3 / +1
Query: 321 TSNLAGVV*XXILALVRNQMELHI*YCPAVVA*YADHFVITGVRQXXXXXXEPFPXXXHV 142
TSNL GVV* +AL+ N ++LH+*Y PA++A YA+H ++ GV Q + FP HV
Sbjct: 253 TSNLPGVV*LATMALMCN*VKLHL*YRPAIIAQYANHLIVEGV*QSR*FCIQSFPCL*HV 432
Query: 141 XXXXGAKGACKLAVLFHFFQALYMNGMTXRQDGNIICRIEQV 16
GA+ AC+LA+L HFFQA +MN MT RQ+ +II R++QV
Sbjct: 433 THRLGAERACELAMLLHFFQAFFMNCMTTRQNRDIISRLKQV 558
Score = 105 bits (225), Expect = 7e-023
Identities = 46/102 (45%), Positives = 54/102 (52%)
Frame = -2 / +3
Query: 319 FKSXGCCMXXXSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTEXXXXXXAFPXXXXCX 140
FK GCCM GT Q + TA LI PR+ C IC P RS TE FP C
Sbjct: 255 FKFAGCCMTCNYGTYVQLSETAPLIPPRNHCTICEPSYRRRSLTESLVLHPVFPMPLTCH 434
Query: 139 XXXWSKGGMQTGSALPFLSGTLHEWYDXKAGRKHHLSNRTST 14
WS+ GM+ G+A FLS HE YD A ++HH S +TST
Sbjct: 435 TPTWSRAGMRIGNAPSFLSSIFHELYDHTAEQRHHFSTQTST 560
>gb|BQ664207.1|BQ664207 HV02F10u HV Hordeum vulgare subsp. vulgare cDNA clone HV02F10
3-PRIME, mRNA sequence
Length = 497
Score = 144 bits (309), Expect = 2e-034
Identities = 59/86 (68%), Positives = 64/86 (74%)
Frame = +1 / -3
Query: 64 TIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERLXXXXXXLSDSCDHKMVRILCNDCGA 243
TIH KCLKEM+EHCQFACPLCS M ERL LS+S D KMVRILCNDCGA
Sbjct: 495 TIHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGA 316
Query: 244 ISDVQFHLIAHKCQNXXSYNTRXI*S 321
+S+VQFHLIAHKC + SYNTR I*S
Sbjct: 315 VSEVQFHLIAHKCHSCKSYNTRQI*S 238
Score = 133 bits (286), Expect = 3e-031
Identities = 57/86 (66%), Positives = 61/86 (70%)
Frame = -1 / +2
Query: 320 LQIXRVLYXXXFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRXXXXXXSLSXXXXMX 141
LQI RVLY WHLCAIK NCTSD APQSLHNMRTIL S+E DR SLS M
Sbjct: 239 LQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDMS 418
Query: 140 XXXLEQRGHANWQCSSISFRHFT*MV 63
LEQ GHANWQCS ISF+HF+*+V
Sbjct: 419 HTDLEQSGHANWQCSFISFKHFS*IV 496
>gb|CA010449.1|CA010449 HT09N07u HT Hordeum vulgare subsp. vulgare cDNA clone HT09N07
3-PRIME, mRNA sequence
Length = 488
Score = 142 bits (304), Expect = 9e-034
Identities = 58/85 (68%), Positives = 63/85 (74%)
Frame = +1 / -1
Query: 67 IHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERLXXXXXXLSDSCDHKMVRILCNDCGAI 246
IH KCLKEM+EHCQFACPLCS M ERL LS+S D KMVRILCNDCGA+
Sbjct: 488 IHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGAV 309
Query: 247 SDVQFHLIAHKCQNXXSYNTRXI*S 321
S+VQFHLIAHKC + SYNTR I*S
Sbjct: 308 SEVQFHLIAHKCHSCKSYNTRQI*S 234
Score = 131 bits (281), Expect = 1e-030
Identities = 56/84 (66%), Positives = 59/84 (70%)
Frame = -1 / +1
Query: 320 LQIXRVLYXXXFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRXXXXXXSLSXXXXMX 141
LQI RVLY WHLCAIK NCTSD APQSLHNMRTIL S+E DR SLS M
Sbjct: 235 LQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDMS 414
Query: 140 XXXLEQRGHANWQCSSISFRHFT* 69
LEQ GHANWQCS ISF+HF+*
Sbjct: 415 HTDLEQSGHANWQCSFISFKHFS* 486
>gb|AV928420.1|AV928420 AV928420 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdg02 3', mRNA sequence
Length = 752
Score = 137 bits (294), Expect = 2e-032
Identities = 56/82 (68%), Positives = 61/82 (74%)
Frame = +1 / -1
Query: 76 KCLKEMEEHCQFACPLCSXXXXXMXXXXERLXXXXXXLSDSCDHKMVRILCNDCGAISDV 255
KCLKEM+EHCQFACPLCS M ERL LS+S D KMVRILCNDCGA+S+V
Sbjct: 749 KCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGAVSEV 570
Query: 256 QFHLIAHKCQNXXSYNTRXI*S 321
QFHLIAHKC + SYNTR I*S
Sbjct: 569 QFHLIAHKCHSCKSYNTRQI*S 504
Score = 130 bits (279), Expect = 2e-030
Identities = 55/82 (67%), Positives = 57/82 (69%)
Frame = -1 / +1
Query: 320 LQIXRVLYXXXFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRXXXXXXSLSXXXXMX 141
LQI RVLY WHLCAIK NCTSD APQSLHNMRTIL S+E DR SLS M
Sbjct: 505 LQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDMS 684
Query: 140 XXXLEQRGHANWQCSSISFRHF 75
LEQ GHANWQCS ISF+HF
Sbjct: 685 HTDLEQSGHANWQCSFISFKHF 750
>gb|AV911026.1|AV911026 AV911026 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11m03 3', mRNA sequence
Length = 685
Score = 124 bits (266), Expect = 2e-028
Identities = 51/75 (68%), Positives = 52/75 (69%)
Frame = -1 / +1
Query: 320 LQIXRVLYXXXFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRXXXXXXSLSXXXXMX 141
LQI RVLY WHLCAIKWNCTSD APQSLHNMRTIL S+E DR SLS M
Sbjct: 457 LQICRVLYDLQLWHLCAIKWNCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDMS 636
Query: 140 XXXLEQRGHANWQCS 96
LEQ GHANWQCS
Sbjct: 637 HTDLEQSGHANWQCS 681
Score = 122 bits (261), Expect = 7e-028
Identities = 50/76 (65%), Positives = 55/76 (72%)
Frame = +1 / -3
Query: 94 EEHCQFACPLCSXXXXXMXXXXERLXXXXXXLSDSCDHKMVRILCNDCGAISDVQFHLIA 273
+EHCQFACPLCS M ERL LS+S D KMVRILCNDCGA+S+VQFHLIA
Sbjct: 683 KEHCQFACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGAVSEVQFHLIA 504
Query: 274 HKCQNXXSYNTRXI*S 321
HKC + SYNTR I*S
Sbjct: 503 HKCHSCKSYNTRQI*S 456
>gb|BJ474523.1|BJ474523 BJ474523 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14f22 3', mRNA sequence
Length = 389
Score = 117 bits (250), Expect = 2e-026
Identities = 48/75 (64%), Positives = 53/75 (70%)
Frame = +1 / -2
Query: 97 EHCQFACPLCSXXXXXMXXXXERLXXXXXXLSDSCDHKMVRILCNDCGAISDVQFHLIAH 276
+HCQ ACPLCS M ERL LS+S D KMVRILCNDCGA+S+VQFHLIAH
Sbjct: 388 KHCQLACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGAVSEVQFHLIAH 209
Query: 277 KCQNXXSYNTRXI*S 321
KC + SYNTR I*S
Sbjct: 208 KCHSCKSYNTRQI*S 164
Score = 116 bits (248), Expect = 5e-026
Identities = 50/74 (67%), Positives = 51/74 (68%)
Frame = -1 / +3
Query: 320 LQIXRVLYXXXFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRXXXXXXSLSXXXXMX 141
LQI RVLY WHLCAIK NCTSD APQSLHNMRTIL S+E DR SLS M
Sbjct: 165 LQIXRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDMS 344
Query: 140 XXXLEQRGHANWQC 99
LEQ GHANWQC
Sbjct: 345 HTDLEQSGHANWQC 386
>gb|BF625611.2|BF625611 HVSMEa0011O14f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011O14f, mRNA sequence
Length = 638
Score = 68.0 bits (142), Expect(2) = 5e-024
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST D+SVL HTIH++CL EM H F+CP+CS M ++L
Sbjct: 209 YLFDSTMDISVLHCGHTIHLECLNEMRVHHHFSCPVCSRSACDMTDAWQKL 361
Score = 60.6 bits (126), Expect(2) = 5e-024
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +1 / +2
Query: 208 KMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
KMV ILCNDCGA S V+FH++A KC SYNTR
Sbjct: 407 KMVWILCNDCGATSSVRFHVLAQKCPGCSSYNTR 508
>gb|CD662384.1|CD662384 UCRHV18_02aa05_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02aa05, mRNA sequence
Length = 896
Score = 68.0 bits (142), Expect(2) = 8e-024
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +1 / -3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST D+SVL HTIH++CL EM H F+CP+CS M ++L
Sbjct: 762 YLFDSTMDISVLHCGHTIHLECLNEMRVHHHFSCPVCSRSACDMTDAWQKL 610
Score = 60.6 bits (126), Expect(2) = 8e-024
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +1 / -3
Query: 208 KMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
KMV ILCNDCGA S V+FH++A KC SYNTR
Sbjct: 564 KMVWILCNDCGATSSVRFHVLAQKCPGCSSYNTR 463
>gb|AV928554.1|AV928554 AV928554 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdn20 3', mRNA sequence
Length = 751
Score = 68.0 bits (142), Expect(2) = 8e-024
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +1 / -3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST D+SVL HTIH++CL EM H F+CP+CS M ++L
Sbjct: 716 YLFDSTMDISVLHCGHTIHLECLNEMRVHHHFSCPVCSRSACDMTDAWQKL 564
Score = 60.6 bits (126), Expect(2) = 8e-024
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +1 / -3
Query: 208 KMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
KMV ILCNDCGA S V+FH++A KC SYNTR
Sbjct: 518 KMVWILCNDCGATSSVRFHVLAQKCPGCSSYNTR 417
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 123,925,671
Number of Sequences: 312970
Number of extensions: 1299596
Number of successful extensions: 100329
Number of sequences better than 1.0e-020: 17
length of database: 58,378,179
effective HSP length: 49
effective length of database: 43,042,649
effective search space used: 2797772185
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)