TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAM14e11.yg.2.1
         (197 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BG369152.1|BG369152  HVSMEi0022M21f Hordeum vulgare 20 DA...   128   1e-029
gb|CA012753.1|CA012753  HT06F12r HT Hordeum vulgare subsp. v...   128   1e-029
gb|AV836706.1|AV836706  AV836706 K. Sato unpublished cDNA li...   116   3e-026
gb|CA007166.1|CA007166  HU06P22r HU Hordeum vulgare subsp. v...   114   2e-025
gb|CA008120.1|CA008120  HU09P10r HU Hordeum vulgare subsp. v...   114   2e-025
gb|CA018261.1|CA018261  HV08B18r HV Hordeum vulgare subsp. v...   110   4e-024

>gb|BG369152.1|BG369152 HVSMEi0022M21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
           (20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
           HVSMEi0022M21f, mRNA sequence
          Length = 826

 Score =  128 bits (274), Expect = 1e-029
 Identities = 51/65 (78%), Positives = 61/65 (93%)
 Frame = -2 / +1

                                                                       
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
           PMV TGHSLGR+KLEQ+LKQGR +++E+++TYKIMRRIE EEL LDASE+VITSTRQEID
Sbjct: 58  PMVFTGHSLGRDKLEQLLKQGRQTRDEVNATYKIMRRIEAEELCLDASEIVITSTRQEID 237

                
Query: 16  EQWGL 2
           +QWGL
Sbjct: 238 KQWGL 252



>gb|CA012753.1|CA012753 HT06F12r HT Hordeum vulgare subsp. vulgare cDNA clone HT06F12
           5-PRIME, mRNA sequence
          Length = 700

 Score =  128 bits (274), Expect = 1e-029
 Identities = 51/65 (78%), Positives = 61/65 (93%)
 Frame = -2 / +1

                                                                       
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
           PMV TGHSLGR+KLEQ+LKQGR +++E+++TYKIMRRIE EEL LDASE+VITSTRQEID
Sbjct: 469 PMVFTGHSLGRDKLEQLLKQGRQTRDEVNATYKIMRRIEAEELCLDASEIVITSTRQEID 648

                
Query: 16  EQWGL 2
           +QWGL
Sbjct: 649 KQWGL 663



>gb|AV836706.1|AV836706 AV836706 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
           vulgare seedling leaves second leaf stage Hordeum
           vulgare subsp. vulgare cDNA clone basd26l03, mRNA
           sequence
          Length = 555

 Score =  116 bits (249), Expect = 3e-026
 Identities = 48/65 (73%), Positives = 56/65 (86%)
 Frame = -2 / +1

                                                                       
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
           PM  TGH LG++KLE +LKQGR S+EEI+ TYKIMRRIE EEL+LDASE+VI STRQEI+
Sbjct: 298 PMAFTGHFLGKDKLEGLLKQGRQSREEINMTYKIMRRIEAEELSLDASEIVIASTRQEIE 477

                
Query: 16  EQWGL 2
           EQW L
Sbjct: 478 EQWNL 492



>gb|CA007166.1|CA007166 HU06P22r HU Hordeum vulgare subsp. vulgare cDNA clone HU06P22
           5-PRIME, mRNA sequence
          Length = 660

 Score =  114 bits (243), Expect = 2e-025
 Identities = 47/64 (73%), Positives = 56/64 (87%)
 Frame = -2 / +3

                                                                       
Query: 193 MVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEIDE 14
           MV TGH LG++KLE +LKQGR ++EEI+ TYKIMRRIE EEL+LDASE+VI STRQEI+E
Sbjct: 42  MVFTGHFLGKDKLEGLLKQGRQTREEINMTYKIMRRIEAEELSLDASEIVIASTRQEIEE 221

               
Query: 13  QWGL 2
           QW L
Sbjct: 222 QWNL 233



>gb|CA008120.1|CA008120 HU09P10r HU Hordeum vulgare subsp. vulgare cDNA clone HU09P10
           5-PRIME, mRNA sequence
          Length = 594

 Score =  114 bits (243), Expect = 2e-025
 Identities = 47/64 (73%), Positives = 56/64 (87%)
 Frame = -2 / +3

                                                                       
Query: 193 MVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEIDE 14
           MV TGH LG++KLE +LKQGR ++EEI+ TYKIMRRIE EEL+LDASE+VI STRQEI+E
Sbjct: 258 MVFTGHFLGKDKLEGLLKQGRQTREEINMTYKIMRRIEAEELSLDASEIVIASTRQEIEE 437

               
Query: 13  QWGL 2
           QW L
Sbjct: 438 QWNL 449



>gb|CA018261.1|CA018261 HV08B18r HV Hordeum vulgare subsp. vulgare cDNA clone HV08B18
           5-PRIME, mRNA sequence
          Length = 634

 Score =  110 bits (234), Expect = 4e-024
 Identities = 45/61 (73%), Positives = 54/61 (88%)
 Frame = -2 / +1

                                                                       
Query: 184 TGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEIDEQWG 5
           TGH LG++KLE +LKQGR ++EEI+ TYKIMRRIE EEL+LDASE+VI STRQEI+EQW 
Sbjct: 25  TGHFLGKDKLEGLLKQGRQTREEINMTYKIMRRIEAEELSLDASEIVIASTRQEIEEQWN 204

            
Query: 4   L 2
           L
Sbjct: 205 L 207



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 111,727,384
Number of Sequences: 312970
Number of extensions: 1686891
Number of successful extensions: 295857
Number of sequences better than 1.0e-020: 7
length of database: 58,378,179
effective HSP length: 46
effective length of database: 43,981,559
effective search space used: 835649621
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)