TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH2a02.xg.2.1
(644 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW982533.3|AW982533 HVSMEg0003I09f Hordeum vulgare pre-a... 200 7e-051
gb|CA024787.1|CA024787 HZ50E24r HZ Hordeum vulgare subsp. v... 198 2e-050
gb|BI956967.1|BI956967 HVSMEn0006I08f Hordeum vulgare rachi... 180 6e-045
gb|CA031458.1|CA031458 HX10A06r HX Hordeum vulgare subsp. v... 103 4e-043
gb|BE060794.1|BE060794 HVSMEg0013G05f Hordeum vulgare pre-a... 173 7e-043
gb|CA015150.1|CA015150 HT13H01r HT Hordeum vulgare subsp. v... 163 7e-040
gb|BQ468970.1|BQ468970 HM02P11r HM Hordeum vulgare subsp. v... 162 1e-039
gb|CB882206.1|CB882206 HL01D01w HL Hordeum vulgare subsp. v... 88 1e-037
gb|BE195554.3|BE195554 HVSMEh0089G13f Hordeum vulgare 5-45 ... 91 1e-035
gb|BG300831.1|BG300831 HVSMEb0018J05f Hordeum vulgare seedl... 128 1e-032
gb|BQ468196.1|BQ468196 HP01F17T HP Hordeum vulgare subsp. v... 138 3e-032
gb|BU999035.1|BU999035 HI12P13r HI Hordeum vulgare subsp. v... 138 4e-032
gb|CV053799.1|CV053799 BNEL103c9 Barley EST endosperm libra... 137 5e-032
gb|CV054673.1|CV054673 BNEL112a7 Barley EST endosperm libra... 137 5e-032
gb|CV063264.1|CV063264 BNEL88d6 Barley EST endosperm librar... 137 5e-032
gb|CV063381.1|CV063381 BNEL89f8 Barley EST endosperm librar... 137 5e-032
gb|AV836609.1|AV836609 AV836609 K. Sato unpublished cDNA li... 90 5e-030
gb|CA013673.1|CA013673 HT09C18r HT Hordeum vulgare subsp. v... 128 3e-029
gb|CA019440.1|CA019440 HV11P23r HV Hordeum vulgare subsp. v... 121 3e-027
gb|CV059774.1|CV059774 BNEL50g8 Barley EST endosperm librar... 98 2e-025
gb|BI956417.1|BI956417 HVSMEn0003E01f Hordeum vulgare rachi... 113 8e-025
gb|CV063849.1|CV063849 BNEL93h2 Barley EST endosperm librar... 72 1e-024
>gb|AW982533.3|AW982533 HVSMEg0003I09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003I09f, mRNA sequence
Length = 854
Score = 200 bits (431), Expect = 7e-051
Identities = 79/119 (66%), Positives = 99/119 (83%)
Frame = +2 / +3
Query: 257 LPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAAS 436
L +DIFVST DP KEPP+VTANT+LSILA DYPV+K+SCYVSDDG ++LTF+A+AE +
Sbjct: 3 LAAVDIFVSTVDPLKEPPIVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFDALAETSE 182
Query: 437 FANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGL 613
FA WVPF +K++IEPR P+ YF+ K D K+KV+ FVKDRR +KREY+EFK+RINGL
Sbjct: 183 FARKWVPFVKKYDIEPRAPEWYFSQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGL 359
>gb|CA024787.1|CA024787 HZ50E24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50E24
5-PRIME, mRNA sequence
Length = 365
Score = 198 bits (427), Expect = 2e-050
Identities = 79/115 (68%), Positives = 94/115 (81%)
Frame = +2 / +2
Query: 269 DIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANM 448
D FVST DP KEPPLVTANTILSILA DYPV+KLSCYVSDDG A+LTFE ++E + FA
Sbjct: 11 DFFVSTVDPAKEPPLVTANTILSILAVDYPVDKLSCYVSDDGAAMLTFEGLSETSEFAKK 190
Query: 449 WVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGL 613
WVPFC+K++IEPR P+ YF K D K+KV +FV+DRR +KREY+EFK+RIN L
Sbjct: 191 WVPFCKKYSIEPRAPEWYFQQKIDYLKDKVVPNFVRDRRAMKREYEEFKIRINAL 355
>gb|BI956967.1|BI956967 HVSMEn0006I08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0006I08f, mRNA sequence
Length = 898
Score = 180 bits (388), Expect = 6e-045
Identities = 70/105 (66%), Positives = 89/105 (84%)
Frame = +2 / +2
Query: 299 KEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNI 478
KEPP+VTANT+LSILA DYPV+K+SCYVSDDG ++LTF+A+AE + FA WVPF +K++I
Sbjct: 5 KEPPIVTANTVLSILAGDYPVDKVSCYVSDDGASMLTFDALAETSEFARKWVPFVKKYDI 184
Query: 479 EPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGL 613
EPR P+ YF+ K D K+KV+ FVKDRR +KREY+EFK+RINGL
Sbjct: 185 EPRAPEWYFSQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGL 319
>gb|CA031458.1|CA031458 HX10A06r HX Hordeum vulgare subsp. vulgare cDNA clone HX10A06
5-PRIME, mRNA sequence
Length = 627
Score = 103 bits (220), Expect(2) = 4e-043
Identities = 42/54 (77%), Positives = 47/54 (87%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTF 412
S L +DIFVST DP KEPPLVTANT+LSILA DYPV+K+SCYVSDDG A+LTF
Sbjct: 466 SQLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 627
Score = 90.9 bits (192), Expect(2) = 4e-043
Identities = 35/73 (47%), Positives = 53/73 (72%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I++R+ VL +FL +RI + +A LW +SV+CE+WF FSW+LDQ PK PVN
Sbjct: 232 INPYRMVIVLRLIVLCIFLHYRITNPVRNAYPLWLLSVICEIWFAFSWILDQFPKWSPVN 411
Query: 182 RATDLAVLKDKFE 220
R T L L +++
Sbjct: 412 RETYLDRLALRYD 450
>gb|BE060794.1|BE060794 HVSMEg0013G05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013G05f, mRNA sequence
Length = 624
Score = 173 bits (373), Expect = 7e-043
Identities = 69/102 (67%), Positives = 84/102 (82%)
Frame = +2 / +1
Query: 308 PLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPR 487
PLVTANTILSILA DYPV+KLSCYVSDDG A+LTFE ++E + FA WVPFC+K++IEPR
Sbjct: 1 PLVTANTILSILAVDYPVDKLSCYVSDDGAAMLTFEGLSETSEFAKKWVPFCKKYSIEPR 180
Query: 488 NPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGL 613
P+ YF K D K+KV +FV+DRR +KREY+EFK+RIN L
Sbjct: 181 APEWYFQQKIDYLKDKVVPNFVRDRRAMKREYEEFKIRINAL 306
>gb|CA015150.1|CA015150 HT13H01r HT Hordeum vulgare subsp. vulgare cDNA clone HT13H01
5-PRIME, mRNA sequence
Length = 526
Score = 163 bits (351), Expect = 7e-040
Identities = 62/95 (65%), Positives = 78/95 (82%)
Frame = +2 / +3
Query: 329 ILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFN 508
+LSILA DYPV+K+SCYVSDDG A+LTFE+++E A FA WVPFC+KHNIEPR P+ YF
Sbjct: 3 VLSILAVDYPVDKVSCYVSDDGSAMLTFESLSETAEFARKWVPFCKKHNIEPRAPEFYFQ 182
Query: 509 LKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGL 613
K D K+K++ FVK+RR +KREY+EFK+RIN L
Sbjct: 183 QKIDYLKDKIQPSFVKERRAMKREYEEFKIRINAL 287
>gb|BQ468970.1|BQ468970 HM02P11r HM Hordeum vulgare subsp. vulgare cDNA clone HM02P11
5-PRIME, mRNA sequence
Length = 619
Score = 162 bits (349), Expect = 1e-039
Identities = 63/96 (65%), Positives = 78/96 (81%)
Frame = +2 / +2
Query: 326 TILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYF 505
T+LSILA DYPVEK+SCYVSDDG A+LTFE++AE A FA WVPFC+K +IEPR P+ YF
Sbjct: 2 TVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKFSIEPRTPEFYF 181
Query: 506 NLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGL 613
+ K D K+K+ FVK+RR +KR+Y+EFKVRIN L
Sbjct: 182 SQKIDYLKDKIHPSFVKERRAMKRDYEEFKVRINAL 289
>gb|CB882206.1|CB882206 HL01D01w HL Hordeum vulgare subsp. vulgare cDNA clone HL01D01
3-PRIME, mRNA sequence
Length = 700
Score = 88.1 bits (186), Expect(2) = 1e-037
Identities = 35/46 (76%), Positives = 40/46 (86%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSD 388
S L +DIFVST DP KEPP+VTANT+LSILA DYPV+K+SCYVSD
Sbjct: 563 SQLAAVDIFVSTVDPLKEPPIVTANTVLSILAVDYPVDKVSCYVSD 700
Score = 88.1 bits (186), Expect(2) = 1e-037
Identities = 32/73 (43%), Positives = 52/73 (71%)
Frame = +2 / +2
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I++R+ VL +FL +R+ + +A LW +SV+CE+WF SW+LDQ PK P+N
Sbjct: 329 INPYRMVIVLRLVVLSIFLHYRLTNPVRNAYPLWLLSVICEIWFALSWILDQFPKWFPIN 508
Query: 182 RATDLAVLKDKFE 220
R T L L +++
Sbjct: 509 RETYLDRLALRYD 547
>gb|BE195554.3|BE195554 HVSMEh0089G13f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089G13f, mRNA sequence
Length = 845
Score = 90.9 bits (192), Expect(2) = 1e-035
Identities = 36/55 (65%), Positives = 44/55 (80%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFE 415
S L +DIF+ST DP KEPP+VT NT LSILA DYP++K+SCYVSDDG +TF+
Sbjct: 371 SQLAAVDIFLSTVDPLKEPPIVTVNTGLSILACDYPMDKVSCYVSDDGALKVTFD 535
Score = 79.0 bits (166), Expect(2) = 1e-035
Identities = 27/58 (46%), Positives = 43/58 (74%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCP 175
++PYR++I++R+ VL +FL +R+ + +A LW +SV+CE+WF SW+LDQ PK P
Sbjct: 136 INPYRMVIVLRLVVLSIFLHYRLTNPVRNAYPLWLLSVICEIWFALSWILDQFPKWFP 309
>gb|BG300831.1|BG300831 HVSMEb0018J05f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018J05f, mRNA sequence
Length = 605
Score = 128 bits (274), Expect(2) = 1e-032
Identities = 46/90 (51%), Positives = 67/90 (74%)
Frame = +2 / +1
Query: 257 LPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAAS 436
LP +DIFV TADP+ EPP++ +T+LS++A DYP EKL+ Y+SDD G+ +TF A+ EA+
Sbjct: 307 LPAVDIFVCTADPDLEPPMLVISTVLSVMAYDYPPEKLNIYLSDDAGSAITFYALHEASE 486
Query: 437 FANMWVPFCRKHNIEPRNPDSYFNLKKDPY 526
FA W+PFC+ + +EPR+P +YF P+
Sbjct: 487 FAKHWIPFCKNYKVEPRSPAAYFAQGDTPH 576
Score = 31.3 bits (62), Expect(2) = 1e-032
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2 / +1
Query: 113 VVCELWFGFSWLLDQLPKLCPVNRAT 190
+V ELWFG W+L + PV R T
Sbjct: 190 LVAELWFGLYWVLTLSVRWNPVRRTT 267
>gb|BQ468196.1|BQ468196 HP01F17T HP Hordeum vulgare subsp. vulgare cDNA clone HP01F17
5-PRIME, mRNA sequence
Length = 519
Score = 138 bits (296), Expect = 3e-032
Identities = 54/60 (90%), Positives = 58/60 (96%)
Frame = +2 / +1
Query: 464 RKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDA 643
RKH IEPRNP+SYF+LK+DPYKNKVR DFVKDRRR+KREYDEFKVRINGLPDSIRRRSDA
Sbjct: 13 RKHGIEPRNPESYFSLKRDPYKNKVRSDFVKDRRRIKREYDEFKVRINGLPDSIRRRSDA 192
>gb|BU999035.1|BU999035 HI12P13r HI Hordeum vulgare subsp. vulgare cDNA clone HI12P13
5-PRIME, mRNA sequence
Length = 656
Score = 138 bits (295), Expect = 4e-032
Identities = 54/86 (62%), Positives = 68/86 (79%)
Frame = +2 / +1
Query: 356 PVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNK 535
P ++SCYVSDDG A+LTF+A+AE + FA WVPFC+K+NIEPR P+ YF K D K+K
Sbjct: 25 PC*QVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDFLKDK 204
Query: 536 VRQDFVKDRRRVKREYDEFKVRINGL 613
V+ FVKDRR +KREY+EFKVR+N L
Sbjct: 205 VQTSFVKDRRAMKREYEEFKVRVNSL 282
>gb|CV053799.1|CV053799 BNEL103c9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL103c9 5' similar to Oryza sativa,
mRNA sequence
Length = 710
Score = 137 bits (294), Expect = 5e-032
Identities = 54/89 (60%), Positives = 66/89 (74%)
Frame = +2 / +2
Query: 239 PTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEA 418
P G SDLP LD+F++T DP EP L T N+ILSILA DYPV+K + Y SDDGG+L+ +E
Sbjct: 77 PDGGSDLPLLDVFINTVDPVDEPMLYTMNSILSILATDYPVQKYATYFSDDGGSLVHYEG 256
Query: 419 MAEAASFANMWVPFCRKHNIEPRNPDSYF 505
+ A FA WVPFCRKH +EPR P+SYF
Sbjct: 257 LLLTAEFAASWVPFCRKHCVEPRAPESYF 343
>gb|CV054673.1|CV054673 BNEL112a7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112a7 5' similar to Oryza sativa,
mRNA sequence
Length = 705
Score = 137 bits (294), Expect = 5e-032
Identities = 54/89 (60%), Positives = 66/89 (74%)
Frame = +2 / +2
Query: 239 PTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEA 418
P G SDLP LD+F++T DP EP L T N+ILSILA DYPV+K + Y SDDGG+L+ +E
Sbjct: 77 PDGGSDLPLLDVFINTVDPVDEPMLYTMNSILSILATDYPVQKYATYFSDDGGSLVHYEG 256
Query: 419 MAEAASFANMWVPFCRKHNIEPRNPDSYF 505
+ A FA WVPFCRKH +EPR P+SYF
Sbjct: 257 LLLTAEFAASWVPFCRKHCVEPRAPESYF 343
>gb|CV063264.1|CV063264 BNEL88d6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL88d6 5' similar to putative
cellulose synthase-like protein OsCslF1, mRNA sequence
Length = 846
Score = 137 bits (294), Expect = 5e-032
Identities = 54/89 (60%), Positives = 66/89 (74%)
Frame = +2 / +2
Query: 239 PTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEA 418
P G SDLP LD+F++T DP EP L T N+ILSILA DYPV+K + Y SDDGG+L+ +E
Sbjct: 86 PDGGSDLPLLDVFINTVDPVDEPMLYTMNSILSILATDYPVQKYATYFSDDGGSLVHYEG 265
Query: 419 MAEAASFANMWVPFCRKHNIEPRNPDSYF 505
+ A FA WVPFCRKH +EPR P+SYF
Sbjct: 266 LLLTAEFAASWVPFCRKHCVEPRAPESYF 352
>gb|CV063381.1|CV063381 BNEL89f8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL89f8 5' similar to Oryza sativa,
mRNA sequence
Length = 707
Score = 137 bits (294), Expect = 5e-032
Identities = 54/89 (60%), Positives = 66/89 (74%)
Frame = +2 / +2
Query: 239 PTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEA 418
P G SDLP LD+F++T DP EP L T N+ILSILA DYPV+K + Y SDDGG+L+ +E
Sbjct: 77 PDGGSDLPLLDVFINTVDPVDEPMLYTMNSILSILATDYPVQKYATYFSDDGGSLVHYEG 256
Query: 419 MAEAASFANMWVPFCRKHNIEPRNPDSYF 505
+ A FA WVPFCRKH +EPR P+SYF
Sbjct: 257 LLLTAEFAASWVPFCRKHCVEPRAPESYF 343
>gb|AV836609.1|AV836609 AV836609 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd18j24, mRNA
sequence
Length = 548
Score = 90.4 bits (191), Expect(2) = 5e-030
Identities = 33/73 (45%), Positives = 50/73 (68%)
Frame = +2 / +2
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I+IR+ ++ LF +R+ H DA LW +SV+CE+WF SW+LDQ PK P+
Sbjct: 212 INPYRMIIVIRLVIVCLFFHYRVMHPVHDAFVLWLISVICEIWFAMSWILDQFPKWFPIE 391
Query: 182 RATDLAVLKDKFE 220
R T L L +F+
Sbjct: 392 RETYLDRLTLRFD 430
Score = 60.2 bits (125), Expect(2) = 5e-030
Identities = 26/34 (76%), Positives = 27/34 (79%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAAD 352
S L +D FVST DP KEPPLVTANTILSILA D
Sbjct: 446 SQLAPVDFFVSTVDPAKEPPLVTANTILSILAVD 547
>gb|CA013673.1|CA013673 HT09C18r HT Hordeum vulgare subsp. vulgare cDNA clone HT09C18
5-PRIME, mRNA sequence
Length = 409
Score = 128 bits (274), Expect = 3e-029
Identities = 49/84 (58%), Positives = 66/84 (78%)
Frame = +2 / +3
Query: 257 LPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAAS 436
LP +DIFV TADP EPP + +TILS++A +YP EKLS Y+SDDGG++LTF M EA+
Sbjct: 69 LPCVDIFVCTADPYSEPPSLVVSTILSLMAYNYPPEKLSVYLSDDGGSILTFYGMREASL 248
Query: 437 FANMWVPFCRKHNIEPRNPDSYFN 508
A W+PFC+++NIEPR+P +YF+
Sbjct: 249 IAKHWLPFCKRYNIEPRSPAAYFS 320
>gb|CA019440.1|CA019440 HV11P23r HV Hordeum vulgare subsp. vulgare cDNA clone HV11P23
5-PRIME, mRNA sequence
Length = 619
Score = 121 bits (259), Expect = 3e-027
Identities = 47/78 (60%), Positives = 61/78 (78%)
Frame = +2 / +2
Query: 380 VSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKD 559
VSDDG A+LTFE ++E + FA WVPFC+K++IEPR P+ YF K D K+KV +FV+D
Sbjct: 11 VSDDGAAMLTFEGLSETSEFAKKWVPFCKKYSIEPRAPEWYFQQKIDYLKDKVVPNFVRD 190
Query: 560 RRRVKREYDEFKVRINGL 613
RR +KREY+EFK+RIN L
Sbjct: 191 RRAMKREYEEFKIRINAL 244
>gb|CV059774.1|CV059774 BNEL50g8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL50g8 5' similar to Oryza sativa,
mRNA sequence
Length = 588
Score = 97.7 bits (207), Expect(2) = 2e-025
Identities = 35/72 (48%), Positives = 54/72 (75%)
Frame = +2 / +3
Query: 11 YRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRAT 190
YRLL L+R+ V+ LF TWR++H++ DA+WLW +SVV +LWFG +WLL+Q+ KL P
Sbjct: 267 YRLLTLVRVIVVILFFTWRMRHRDSDAMWLWWISVVGDLWFGVTWLLNQITKLKPRKCVP 446
Query: 191 DLAVLKDKFETP 226
++VL+++ + P
Sbjct: 447 SISVLREQLDQP 482
Score = 37.7 bits (76), Expect(2) = 2e-025
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2 / +3
Query: 239 PTGRSDLPGLDIFVSTADPEKEPPLVT 319
P G SDLP LD+ ++T DP EP L T
Sbjct: 480 PDGGSDLPLLDVVINTVDPVDEPMLYT 560
>gb|BI956417.1|BI956417 HVSMEn0003E01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0003E01f, mRNA sequence
Length = 457
Score = 113 bits (242), Expect = 8e-025
Identities = 47/97 (48%), Positives = 62/97 (63%)
Frame = +2 / +3
Query: 323 NTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSY 502
N++L ILA YP + CY+ D +L +++ F WVPFC+K +I+PR P Y
Sbjct: 6 NSMLFILA*VYPDARKMCYICGDRAGMLCLNTLSDTGEFERRWVPFCKKFSIKPRAP*FY 185
Query: 503 FNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGL 613
F+ K D K+KV FVK+RR +KREYDEFK RINGL
Sbjct: 186 FSQKIDYLKDKVHPTFVKERRAMKREYDEFKERINGL 296
>gb|CV063849.1|CV063849 BNEL93h2 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL93h2 5' similar to Oryza sativa,
mRNA sequence
Length = 706
Score = 72.1 bits (151), Expect(2) = 1e-024
Identities = 25/42 (59%), Positives = 35/42 (83%)
Frame = +2 / +2
Query: 11 YRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFG 136
YRLL L+R+ V+ LF TWR++H++ DA+WLW +SVV +LWFG
Sbjct: 266 YRLLTLVRVIVVILFFTWRMRHRDSDAMWLWWISVVGDLWFG 391
Score = 60.6 bits (126), Expect(2) = 1e-024
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = +2 / +3
Query: 239 PTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYP 358
P G SDLP LD+F++T DP EP L T N++LSIL DYP
Sbjct: 480 PDGGSDLPLLDVFINTGDPVDEPMLYTMNSMLSILVTDYP 599
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 307,477,123
Number of Sequences: 312970
Number of extensions: 4829012
Number of successful extensions: 51877
Number of sequences better than 1.0e-020: 28
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6913923567
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)