TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE12f02.yg.2.1
(290 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike... 159 5e-039
gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA li... 159 5e-039
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 159 5e-039
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 158 1e-038
gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subs... 157 1e-038
gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green... 153 2e-037
gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA li... 146 4e-035
gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedl... 144 2e-034
gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachi... 141 1e-033
gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA li... 140 2e-033
gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachi... 137 2e-032
gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA li... 137 2e-032
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 137 2e-032
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 137 2e-032
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 137 2e-032
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 137 2e-032
gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachi... 136 3e-032
gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA li... 136 3e-032
gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA li... 136 3e-032
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 136 3e-032
gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA li... 136 3e-032
gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA li... 136 3e-032
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 136 3e-032
gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA li... 136 3e-032
gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA li... 136 3e-032
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 136 3e-032
gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA li... 136 3e-032
gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. v... 136 3e-032
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 136 3e-032
gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA li... 135 6e-032
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 135 8e-032
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 135 8e-032
gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. v... 134 1e-031
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 134 1e-031
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 134 1e-031
gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedl... 133 4e-031
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 132 7e-031
gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. v... 132 7e-031
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 131 1e-030
gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA li... 131 1e-030
gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA li... 131 1e-030
gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA li... 131 1e-030
gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. v... 131 1e-030
gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, dro... 131 1e-030
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 131 1e-030
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 131 1e-030
gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. v... 131 1e-030
gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. v... 131 1e-030
gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DA... 126 3e-029
gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA li... 126 3e-029
gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA li... 126 3e-029
gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. v... 126 3e-029
gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA li... 121 1e-027
gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, dro... 121 1e-027
gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA li... 119 5e-027
gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA li... 119 5e-027
gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Le... 118 7e-027
gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. v... 116 5e-026
gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiol... 114 2e-025
gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. v... 112 6e-025
gb|BE411894.1|BE411894 ISC010.D05F990917 ITEC ISC Barley Le... 111 2e-024
gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA li... 103 3e-022
gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. v... 102 5e-022
gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. v... 102 5e-022
gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-a... 102 7e-022
>gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013O09f, mRNA sequence
Length = 938
Score = 159 bits (341), Expect = 5e-039
Identities = 68/95 (71%), Positives = 72/95 (75%)
Frame = -2 / -1
Query: 286 AXXGSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHD 107
A G E IEA+RM IVGVLFCLP +PLR GY ITQNAKKSFP GPHD
Sbjct: 404 ARKGFTRTHRSEMIEANRMDQTITIVGVLFCLPNRPLRNGYR*TITQNAKKSFPKRGPHD 225
Query: 106 SYPLLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
SYPLLIALE PATTPMKF+RS+VVGGINKVVHLNV
Sbjct: 224 SYPLLIALEMPATTPMKFSRSRVVGGINKVVHLNV 120
Score = 151 bits (324), Expect = 1e-036
Identities = 64/96 (66%), Positives = 67/96 (69%)
Frame = +3 / +1
Query: 3 TFKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKG 182
TFKW NFIGVVAG+SNAINNGYESWGP FGKLFFAFWVI LYPFLKG
Sbjct: 121 TFKWTTLLIPPTTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKG 300
Query: 183 LVGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
L+GRQNRTPTI I ILLASI S + P AK
Sbjct: 301 LLGRQNRTPTIVIVWSILLASIISLLWVRVNPFLAK 408
Score = 107 bits (229), Expect = 1e-023
Identities = 44/83 (53%), Positives = 58/83 (69%)
Frame = -1 / -3
Query: 251 ED*SQQDXXXDXNCRCPVLPPNQTFEEGIQXXNHPKCKEELPEXGAP*LVSIIDCIGNTS 72
+D SQQD D + R PVLP QT EE +Q NHP+ +EELPE P* +S++DC+G+ S
Sbjct: 369 DDRSQQDGPDDHDRRGPVLPSQQTLEERVQMNNHPEREEELPEERPP*FISVVDCVGDAS 190
Query: 71 DHTNEVQ*EQSGRRYQ*GSPFKC 3
+HT+EVQ +Q GR Q G PF+C
Sbjct: 189 NHTDEVQQKQGGRGNQQGCPFEC 121
>gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20i09 5', mRNA sequence
Length = 579
Score = 159 bits (341), Expect = 5e-039
Identities = 68/95 (71%), Positives = 72/95 (75%)
Frame = -2 / -1
Query: 286 AXXGSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHD 107
A G E IEA+RM IVGVLFCLP +PLR GY ITQNAKKSFP GPHD
Sbjct: 372 ARKGFTRTHRSEMIEANRMDQTITIVGVLFCLPNRPLRNGYR*TITQNAKKSFPKRGPHD 193
Query: 106 SYPLLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
SYPLLIALE PATTPMKF+RS+VVGGINKVVHLNV
Sbjct: 192 SYPLLIALEMPATTPMKFSRSRVVGGINKVVHLNV 88
Score = 151 bits (324), Expect = 1e-036
Identities = 64/96 (66%), Positives = 67/96 (69%)
Frame = +3 / +2
Query: 3 TFKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKG 182
TFKW NFIGVVAG+SNAINNGYESWGP FGKLFFAFWVI LYPFLKG
Sbjct: 89 TFKWTTLLIPPTTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKG 268
Query: 183 LVGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
L+GRQNRTPTI I ILLASI S + P AK
Sbjct: 269 LLGRQNRTPTIVIVWSILLASIISLLWVRVNPFLAK 376
Score = 107 bits (229), Expect = 1e-023
Identities = 44/83 (53%), Positives = 58/83 (69%)
Frame = -1 / -3
Query: 251 ED*SQQDXXXDXNCRCPVLPPNQTFEEGIQXXNHPKCKEELPEXGAP*LVSIIDCIGNTS 72
+D SQQD D + R PVLP QT EE +Q NHP+ +EELPE P* +S++DC+G+ S
Sbjct: 337 DDRSQQDGPDDHDRRGPVLPSQQTLEERVQMNNHPEREEELPEERPP*FISVVDCVGDAS 158
Query: 71 DHTNEVQ*EQSGRRYQ*GSPFKC 3
+HT+EVQ +Q GR Q G PF+C
Sbjct: 157 NHTDEVQQKQGGRGNQQGCPFEC 89
>gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53E19
5-PRIME, mRNA sequence
Length = 456
Score = 159 bits (341), Expect = 5e-039
Identities = 68/95 (71%), Positives = 72/95 (75%)
Frame = -2 / -3
Query: 286 AXXGSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHD 107
A G E IEA+RM IVGVLFCLP +PLR GY ITQNAKKSFP GPHD
Sbjct: 448 ARKGFTRTHRSEMIEANRMDQTITIVGVLFCLPNRPLRNGYR*TITQNAKKSFPKRGPHD 269
Query: 106 SYPLLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
SYPLLIALE PATTPMKF+RS+VVGGINKVVHLNV
Sbjct: 268 SYPLLIALEMPATTPMKFSRSRVVGGINKVVHLNV 164
Score = 151 bits (324), Expect = 1e-036
Identities = 64/96 (66%), Positives = 67/96 (69%)
Frame = +3 / +3
Query: 3 TFKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKG 182
TFKW NFIGVVAG+SNAINNGYESWGP FGKLFFAFWVI LYPFLKG
Sbjct: 165 TFKWTTLLIPPTTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKG 344
Query: 183 LVGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
L+GRQNRTPTI I ILLASI S + P AK
Sbjct: 345 LLGRQNRTPTIVIVWSILLASIISLLWVRVNPFLAK 452
Score = 107 bits (229), Expect = 1e-023
Identities = 44/83 (53%), Positives = 58/83 (69%)
Frame = -1 / -2
Query: 251 ED*SQQDXXXDXNCRCPVLPPNQTFEEGIQXXNHPKCKEELPEXGAP*LVSIIDCIGNTS 72
+D SQQD D + R PVLP QT EE +Q NHP+ +EELPE P* +S++DC+G+ S
Sbjct: 413 DDRSQQDGPDDHDRRGPVLPSQQTLEERVQMNNHPEREEELPEERPP*FISVVDCVGDAS 234
Query: 71 DHTNEVQ*EQSGRRYQ*GSPFKC 3
+HT+EVQ +Q GR Q G PF+C
Sbjct: 233 NHTDEVQQKQGGRGNQQGCPFEC 165
>gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19J12
5-PRIME, mRNA sequence
Length = 649
Score = 158 bits (339), Expect = 1e-038
Identities = 67/92 (72%), Positives = 71/92 (77%)
Frame = -2 / -3
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
G E IEA+RM IVGVLFCLP +PLR GY ITQNAKKSFP GPHDSYP
Sbjct: 641 GFTRTHRSEMIEANRMDQTITIVGVLFCLPNRPLRNGYR*TITQNAKKSFPKRGPHDSYP 462
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LLIALE PATTPMKF+RS+VVGGINKVVHLNV
Sbjct: 461 LLIALEMPATTPMKFSRSRVVGGINKVVHLNV 366
Score = 148 bits (317), Expect = 1e-035
Identities = 62/92 (67%), Positives = 65/92 (70%)
Frame = +3 / +1
Query: 3 TFKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKG 182
TFKW NFIGVVAG+SNAINNGYESWGP FGKLFFAFWVI LYPFLKG
Sbjct: 367 TFKWTTLLIPPTTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKG 546
Query: 183 LVGRQNRTPTIXIXXXILLASIFSXXXXXIXP 278
L+GRQNRTPTI I ILLASI S + P
Sbjct: 547 LLGRQNRTPTIVIVWSILLASIISLLWVRVNP 642
Score = 107 bits (229), Expect = 1e-023
Identities = 44/83 (53%), Positives = 58/83 (69%)
Frame = -1 / -2
Query: 251 ED*SQQDXXXDXNCRCPVLPPNQTFEEGIQXXNHPKCKEELPEXGAP*LVSIIDCIGNTS 72
+D SQQD D + R PVLP QT EE +Q NHP+ +EELPE P* +S++DC+G+ S
Sbjct: 615 DDRSQQDGPDDHDRRGPVLPSQQTLEERVQMNNHPEREEELPEERPP*FISVVDCVGDAS 436
Query: 71 DHTNEVQ*EQSGRRYQ*GSPFKC 3
+HT+EVQ +Q GR Q G PF+C
Sbjct: 435 NHTDEVQQKQGGRGNQQGCPFEC 367
>gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081H04F1, mRNA sequence
Length = 360
Score = 157 bits (338), Expect = 1e-038
Identities = 66/84 (78%), Positives = 70/84 (83%)
Frame = -2 / -1
Query: 253 EKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYPLLIALETP 74
E IEA+RM IVGVLFCLP +PLR GY ITQNAKKSFP GPHDSYPLLIALE P
Sbjct: 342 EMIEANRMDQTITIVGVLFCLPNRPLRNGYR*TITQNAKKSFPKRGPHDSYPLLIALEMP 163
Query: 73 ATTPMKFNRSKVVGGINKVVHLNV 2
ATTPMKF+RS+VVGGINKVVHLNV
Sbjct: 162 ATTPMKFSRSRVVGGINKVVHLNV 91
Score = 146 bits (314), Expect = 3e-035
Identities = 61/84 (72%), Positives = 63/84 (75%)
Frame = +3 / +2
Query: 3 TFKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKG 182
TFKW NFIGVVAG+SNAINNGYESWGP FGKLFFAFWVI LYPFLKG
Sbjct: 92 TFKWTTLLIPPTTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKG 271
Query: 183 LVGRQNRTPTIXIXXXILLASIFS 254
L+GRQNRTPTI I ILLASI S
Sbjct: 272 LLGRQNRTPTIVIVWSILLASIIS 343
Score = 107 bits (229), Expect = 1e-023
Identities = 44/83 (53%), Positives = 58/83 (69%)
Frame = -1 / -3
Query: 251 ED*SQQDXXXDXNCRCPVLPPNQTFEEGIQXXNHPKCKEELPEXGAP*LVSIIDCIGNTS 72
+D SQQD D + R PVLP QT EE +Q NHP+ +EELPE P* +S++DC+G+ S
Sbjct: 340 DDRSQQDGPDDHDRRGPVLPSQQTLEERVQMNNHPEREEELPEERPP*FISVVDCVGDAS 161
Query: 71 DHTNEVQ*EQSGRRYQ*GSPFKC 3
+HT+EVQ +Q GR Q G PF+C
Sbjct: 160 NHTDEVQQKQGGRGNQQGCPFEC 92
>gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0024E12f, mRNA sequence
Length = 707
Score = 153 bits (329), Expect = 2e-037
Identities = 66/95 (69%), Positives = 70/95 (73%)
Frame = -2 / -3
Query: 286 AXXGSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHD 107
A G E IEA+RM IVGVLFCLP +PLR GY ITQNAKKSFP GPHD
Sbjct: 426 ARKGFTRTHRSEMIEANRMDQTITIVGVLFCLPNRPLRNGYR*TITQNAKKSFPKRGPHD 247
Query: 106 SYPLLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
SYPLLIALE PATTPMKF+RS+VV INKVVHLNV
Sbjct: 246 SYPLLIALEMPATTPMKFSRSRVVAAINKVVHLNV 142
Score = 151 bits (325), Expect = 8e-037
Identities = 63/96 (65%), Positives = 67/96 (69%)
Frame = +3 / +2
Query: 3 TFKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKG 182
TFKW NFIGVVAG+SNAINNGYESWGP FGKLFFAFWVI LYPFLKG
Sbjct: 143 TFKWTTLLMAATTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKG 322
Query: 183 LVGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
L+GRQNRTPTI I ILLASI S + P A+
Sbjct: 323 LLGRQNRTPTIVIVWSILLASIISLLWVRVNPFLAR 430
Score = 112 bits (240), Expect = 4e-025
Identities = 45/83 (54%), Positives = 60/83 (72%)
Frame = -1 / -2
Query: 251 ED*SQQDXXXDXNCRCPVLPPNQTFEEGIQXXNHPKCKEELPEXGAP*LVSIIDCIGNTS 72
+D SQQD D + R PVLP QT EE +Q NHP+ +EELPE P* +S++DC+G+ S
Sbjct: 391 DDRSQQDGPDDHDRRGPVLPSQQTLEERVQMNNHPEREEELPEERPP*FISVVDCVGDAS 212
Query: 71 DHTNEVQ*EQSGRRYQ*GSPFKC 3
+HT+EVQ +Q GRR+Q G PF+C
Sbjct: 211 NHTDEVQQKQGGRRHQQGCPFEC 143
>gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1a04 3', mRNA sequence
Length = 588
Score = 146 bits (313), Expect = 4e-035
Identities = 60/71 (84%), Positives = 63/71 (88%)
Frame = -2 / +3
Query: 214 IVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYPLLIALETPATTPMKFNRSKVV 35
IVGVLFCLP +PLR GY ITQNAKKSFP GPHDSYPLLIALE PATTPMKF+RS+VV
Sbjct: 210 IVGVLFCLPNRPLRNGYR*TITQNAKKSFPKRGPHDSYPLLIALEMPATTPMKFSRSRVV 389
Query: 34 GGINKVVHLNV 2
GGINKVVHLNV
Sbjct: 390 GGINKVVHLNV 422
Score = 135 bits (289), Expect = 8e-032
Identities = 54/73 (73%), Positives = 56/73 (76%)
Frame = +3 / -3
Query: 3 TFKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKG 182
TFKW NFIGVVAG+SNAINNGYESWGP FGKLFFAFWVI LYPFLKG
Sbjct: 421 TFKWTTLLIPPTTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKG 242
Query: 183 LVGRQNRTPTIXI 221
L+GRQNRTPTI I
Sbjct: 241 LLGRQNRTPTIVI 203
Score = 98.7 bits (209), Expect = 8e-021
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = -1 / +2
Query: 221 DXNCRCPVLPPNQTFEEGIQXXNHPKCKEELPEXGAP*LVSIIDCIGNTSDHTNEVQ*EQ 42
D + R PVLP QT EE +Q NHP+ +EELPE P* +S++DC+G+ S+HT+EVQ +Q
Sbjct: 203 DHDRRGPVLPSQQTLEERVQMNNHPEREEELPEERPP*FISVVDCVGDASNHTDEVQQKQ 382
Query: 41 SGRRYQ*GSPFKC 3
GR Q G PF+C
Sbjct: 383 GGRGNQQGCPFEC 421
>gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019A22f, mRNA sequence
Length = 619
Score = 144 bits (308), Expect = 2e-034
Identities = 60/79 (75%), Positives = 63/79 (79%)
Frame = +3 / +1
Query: 54 NFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGLVGRQNRTPTIXIXXXI 233
NFIGVVAG+SNAINNGYESWGP FGKLFFAFWVI LYPFLKGL+GRQNRTPTI I I
Sbjct: 31 NFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSI 210
Query: 234 LLASIFSXXXXXIXPXXAK 290
LLASI S + P AK
Sbjct: 211 LLASIISLLWVRVNPFLAK 267
Score = 140 bits (300), Expect = 2e-033
Identities = 60/87 (68%), Positives = 64/87 (73%)
Frame = -2 / -3
Query: 286 AXXGSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHD 107
A G E IEA+RM IVGVLFCLP +PLR GY ITQNAKKSFP GPHD
Sbjct: 263 ARKGFTRTHRSEMIEANRMDQTITIVGVLFCLPNRPLRNGYR*TITQNAKKSFPKRGPHD 84
Query: 106 SYPLLIALETPATTPMKFNRSKVVGGI 26
SYPLLIALE PATTPMKF+RS+VVGGI
Sbjct: 83 SYPLLIALEMPATTPMKFSRSRVVGGI 3
>gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O11f, mRNA sequence
Length = 658
Score = 141 bits (302), Expect = 1e-033
Identities = 58/95 (61%), Positives = 64/95 (67%)
Frame = +3 / -2
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N IGVVAG+S+AINNGY+SWGP FGKLFFAFWVI LYPFLKG
Sbjct: 492 FKWTTLLIPQTTLLVINIIGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGF 313
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLAS+FS I P K
Sbjct: 312 MGRQNRTPTIVIIWSVLLASMFSLLWVRIDPFTVK 208
Score = 112 bits (239), Expect = 6e-025
Identities = 51/90 (56%), Positives = 56/90 (62%)
Frame = -2 / +2
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS E +EAS +VGVLFCLP KPLR G ITQ AKKS P GPHD YP
Sbjct: 221 GSILTQSRENMEASSTDHMMTMVGVLFCLPMKPLRNG*RCTITQKAKKSLPNSGPHDWYP 400
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHL 8
LL+A E PATTPM S VV G+ +VVHL
Sbjct: 401 LLMASEMPATTPMMLITSSVV*GMRRVVHL 490
>gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdl12 3', mRNA sequence
Length = 661
Score = 140 bits (301), Expect = 2e-033
Identities = 57/95 (60%), Positives = 65/95 (68%)
Frame = +3 / -1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +G+VAGVS+A+NNGY SWGP FGKLFF+FWVI LYPFLKGL
Sbjct: 493 FKWTTLLIPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGL 314
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI + +LLASIFS I P AK
Sbjct: 313 MGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFIAK 209
Score = 109 bits (233), Expect = 4e-024
Identities = 49/93 (52%), Positives = 55/93 (59%)
Frame = -2 / +3
Query: 286 AXXGSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHD 107
A GS EK+EASR +VGV FCLP PLR G +TQ KKSFP GP D
Sbjct: 213 AMKGSILTHTREKMEASRTDQSTTMVGVRFCLPMSPLRNG*RWTMTQKEKKSFPKSGPQD 392
Query: 106 SYPLLIALETPATTPMKFNRSKVVGGINKVVHL 8
YPLL A +TPAT P VVGGI++VVHL
Sbjct: 393 PYPLLTASDTPATMPTMLIMMSVVGGISRVVHL 491
>gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015J16f, mRNA sequence
Length = 631
Score = 137 bits (294), Expect = 2e-032
Identities = 56/95 (58%), Positives = 64/95 (67%)
Frame = +3 / -1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +G+VAGVS+A+NNGY SWGP FGKLFF+ WVI LYPFLKGL
Sbjct: 538 FKWTTLLIPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSXWVIVHLYPFLKGL 359
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI + +LLASIFS I P AK
Sbjct: 358 MGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFIAK 254
Score = 106 bits (227), Expect = 3e-023
Identities = 48/93 (51%), Positives = 54/93 (58%)
Frame = -2 / +3
Query: 286 AXXGSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHD 107
A GS EK+EASR +VGV FCLP PLR G +T KKSFP GP D
Sbjct: 258 AMKGSILTHTREKMEASRTDQSTTMVGVRFCLPMSPLRNG*RWTMTXKEKKSFPKSGPQD 437
Query: 106 SYPLLIALETPATTPMKFNRSKVVGGINKVVHL 8
YPLL A +TPAT P VVGGI++VVHL
Sbjct: 438 PYPLLTASDTPATMPTMLIMMSVVGGISRVVHL 536
>gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l19 3', mRNA sequence
Length = 505
Score = 137 bits (293), Expect = 2e-032
Identities = 57/95 (60%), Positives = 63/95 (66%)
Frame = +3 / -1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 421 FKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGL 242
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI + ILLASIFS I P +
Sbjct: 241 MGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTR 137
Score = 116 bits (249), Expect = 3e-026
Identities = 52/92 (56%), Positives = 58/92 (63%)
Frame = -2 / +3
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK++A RM +VGV FC P PLR GY ITQ AKKSFP GPHD P
Sbjct: 150 GSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIITQKAKKSFPKSGPHD**P 329
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LLIA E PATTP + VVGGI +VVHLN+
Sbjct: 330 LLIA*EVPATTPTRLMIKIVVGGIRRVVHLNM 425
>gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_J01 5', mRNA sequence
Length = 518
Score = 137 bits (293), Expect = 2e-032
Identities = 57/95 (60%), Positives = 63/95 (66%)
Frame = +3 / +1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 196 FKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGL 375
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI + ILLASIFS I P +
Sbjct: 376 MGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTR 480
Score = 116 bits (249), Expect = 3e-026
Identities = 52/92 (56%), Positives = 58/92 (63%)
Frame = -2 / -1
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK++A RM +VGV FC P PLR GY ITQ AKKSFP GPHD P
Sbjct: 467 GSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIITQKAKKSFPKSGPHD**P 288
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LLIA E PATTP + VVGGI +VVHLN+
Sbjct: 287 LLIA*EVPATTPTRLMIKIVVGGIRRVVHLNM 192
>gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. vulgare cDNA clone HB03K11
5-PRIME, mRNA sequence
Length = 577
Score = 137 bits (293), Expect = 2e-032
Identities = 57/95 (60%), Positives = 63/95 (66%)
Frame = +3 / +1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 190 FKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGL 369
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI + ILLASIFS I P +
Sbjct: 370 MGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTR 474
Score = 116 bits (249), Expect = 3e-026
Identities = 52/92 (56%), Positives = 58/92 (63%)
Frame = -2 / -3
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK++A RM +VGV FC P PLR GY ITQ AKKSFP GPHD P
Sbjct: 461 GSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIITQKAKKSFPKSGPHD**P 282
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LLIA E PATTP + VVGGI +VVHLN+
Sbjct: 281 LLIA*EVPATTPTRLMIKIVVGGIRRVVHLNM 186
>gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. vulgare cDNA clone HI12P13
3-PRIME, mRNA sequence
Length = 651
Score = 137 bits (293), Expect = 2e-032
Identities = 57/95 (60%), Positives = 63/95 (66%)
Frame = +3 / -1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 477 FKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGL 298
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI + ILLASIFS I P +
Sbjct: 297 MGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTR 193
Score = 116 bits (249), Expect = 3e-026
Identities = 52/92 (56%), Positives = 58/92 (63%)
Frame = -2 / +2
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK++A RM +VGV FC P PLR GY ITQ AKKSFP GPHD P
Sbjct: 206 GSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIITQKAKKSFPKSGPHD**P 385
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LLIA E PATTP + VVGGI +VVHLN+
Sbjct: 386 LLIA*EVPATTPTRLMIKIVVGGIRRVVHLNM 481
>gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. vulgare cDNA clone HX10P19
3-PRIME, mRNA sequence
Length = 616
Score = 137 bits (293), Expect = 2e-032
Identities = 57/95 (60%), Positives = 63/95 (66%)
Frame = +3 / -2
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 420 FKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGL 241
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI + ILLASIFS I P +
Sbjct: 240 MGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTR 136
Score = 116 bits (249), Expect = 3e-026
Identities = 52/92 (56%), Positives = 58/92 (63%)
Frame = -2 / +2
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK++A RM +VGV FC P PLR GY ITQ AKKSFP GPHD P
Sbjct: 149 GSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIITQKAKKSFPKSGPHD**P 328
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LLIA E PATTP + VVGGI +VVHLN+
Sbjct: 329 LLIA*EVPATTPTRLMIKIVVGGIRRVVHLNM 424
>gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E20f, mRNA sequence
Length = 681
Score = 136 bits (292), Expect = 3e-032
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = +3 / -2
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 659 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 480
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 479 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 375
Score = 116 bits (248), Expect = 3e-026
Identities = 53/92 (57%), Positives = 57/92 (61%)
Frame = -2 / +1
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 388 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 567
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 568 LLMA*EVPATTPTMLMIKMVVGGMRSVVHLNM 663
>gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 5', mRNA sequence
Length = 631
Score = 136 bits (292), Expect = 3e-032
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = +3 / +1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 175 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 354
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 355 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 459
Score = 116 bits (248), Expect = 3e-026
Identities = 53/92 (57%), Positives = 57/92 (61%)
Frame = -2 / -3
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 446 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 267
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 266 LLMA*EVPATTPTMLMIKMVVGGMRSVVHLNM 171
>gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 5', mRNA sequence
Length = 604
Score = 136 bits (292), Expect = 3e-032
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = +3 / +3
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 174 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 353
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 354 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 458
Score = 116 bits (248), Expect = 3e-026
Identities = 53/92 (57%), Positives = 57/92 (61%)
Frame = -2 / -1
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 445 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 266
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 265 LLMA*EVPATTPTMLMIKMVVGGMRSVVHLNM 170
>gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 5', mRNA sequence
Length = 654
Score = 136 bits (292), Expect = 3e-032
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = +3 / +2
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 356 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 535
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 536 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 640
Score = 116 bits (248), Expect = 3e-026
Identities = 53/92 (57%), Positives = 57/92 (61%)
Frame = -2 / -1
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 627 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 448
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 447 LLMA*EVPATTPTMLMIKMVVGGMRSVVHLNM 352
>gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 3', mRNA sequence
Length = 649
Score = 136 bits (292), Expect = 3e-032
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = +3 / -3
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 581 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 402
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 401 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 297
Score = 116 bits (248), Expect = 3e-026
Identities = 53/92 (57%), Positives = 57/92 (61%)
Frame = -2 / +1
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 310 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 489
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 490 LLMA*EVPATTPTMLMIKMVVGGMRSVVHLNM 585
>gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 3', mRNA sequence
Length = 680
Score = 136 bits (292), Expect = 3e-032
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = +3 / -1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 638 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 459
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 458 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 354
Score = 116 bits (248), Expect = 3e-026
Identities = 53/92 (57%), Positives = 57/92 (61%)
Frame = -2 / +1
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 367 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 546
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 547 LLMA*EVPATTPTMLMIKMVVGGMRSVVHLNM 642
>gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 5', mRNA sequence
Length = 656
Score = 136 bits (292), Expect = 3e-032
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = +3 / +3
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 363 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 542
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 543 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 647
Score = 116 bits (248), Expect = 3e-026
Identities = 53/92 (57%), Positives = 57/92 (61%)
Frame = -2 / -2
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 634 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 455
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 454 LLMA*EVPATTPTMLMIKMVVGGMRSVVHLNM 359
>gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 3', mRNA sequence
Length = 604
Score = 136 bits (292), Expect = 3e-032
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = +3 / -2
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 504 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 325
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 324 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 220
Score = 116 bits (248), Expect = 3e-026
Identities = 53/92 (57%), Positives = 57/92 (61%)
Frame = -2 / +2
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 233 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 412
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 413 LLMA*EVPATTPTMLMIKMVVGGMRSVVHLNM 508
>gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a04 3', mRNA sequence
Length = 650
Score = 136 bits (292), Expect = 3e-032
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = +3 / -1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 638 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 459
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 458 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 354
Score = 116 bits (248), Expect = 3e-026
Identities = 53/92 (57%), Positives = 57/92 (61%)
Frame = -2 / +1
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 367 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 546
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 547 LLMA*EVPATTPTMLMIKMVVGGMRSVVHLNM 642
>gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105G09_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 916
Score = 136 bits (292), Expect = 3e-032
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = +3 / +1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 316 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 495
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 496 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 600
Score = 116 bits (248), Expect = 3e-026
Identities = 53/92 (57%), Positives = 57/92 (61%)
Frame = -2 / -3
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 587 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 408
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 407 LLMA*EVPATTPTMLMIKMVVGGMRSVVHLNM 312
>gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31h15 3', mRNA sequence
Length = 669
Score = 136 bits (292), Expect = 3e-032
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = +3 / -1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 597 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 418
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 417 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 313
Score = 116 bits (248), Expect = 3e-026
Identities = 53/92 (57%), Positives = 57/92 (61%)
Frame = -2 / +2
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 326 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 505
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 506 LLMA*EVPATTPTMLMIKMVVGGMRSVVHLNM 601
>gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
5-PRIME, mRNA sequence
Length = 643
Score = 136 bits (292), Expect = 3e-032
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = +3 / +2
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 173 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 352
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 353 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 457
Score = 116 bits (248), Expect = 3e-026
Identities = 53/92 (57%), Positives = 57/92 (61%)
Frame = -2 / -2
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 444 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 265
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 264 LLMA*EVPATTPTMLMIKMVVGGMRSVVHLNM 169
>gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. vulgare cDNA clone HF25D10
5-PRIME, mRNA sequence
Length = 621
Score = 136 bits (292), Expect = 3e-032
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = +3 / +3
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 195 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 374
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 375 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 479
Score = 116 bits (248), Expect = 3e-026
Identities = 53/92 (57%), Positives = 57/92 (61%)
Frame = -2 / -3
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 466 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 287
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 286 LLMA*EVPATTPTMLMIKMVVGGMRSVVHLNM 191
>gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12l12 5', mRNA sequence
Length = 656
Score = 135 bits (290), Expect = 6e-032
Identities = 53/83 (63%), Positives = 61/83 (73%)
Frame = +3 / +2
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +G+VAGVS+A+NNGY SWGP FGKLFF+FWVI LYPFLKGL
Sbjct: 392 FKWTTLLIPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGL 571
Query: 186 VGRQNRTPTIXIXXXILLASIFS 254
+GRQNRTPTI + +LLASIFS
Sbjct: 572 MGRQNRTPTIVVLWSVLLASIFS 640
Score = 105 bits (225), Expect = 5e-023
Identities = 46/82 (56%), Positives = 52/82 (63%)
Frame = -2 / -3
Query: 253 EKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYPLLIALETP 74
EK+EASR +VGV FCLP PLR G +TQ KKSFP GP D YPLL A +TP
Sbjct: 639 EKMEASRTDQSTTMVGVRFCLPMSPLRNG*RWTMTQKEKKSFPKSGPQDPYPLLTASDTP 460
Query: 73 ATTPMKFNRSKVVGGINKVVHL 8
AT P VVGGI++VVHL
Sbjct: 459 ATMPTMLIMMSVVGGISRVVHL 394
>gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 3', mRNA sequence
Length = 658
Score = 135 bits (289), Expect = 8e-032
Identities = 57/95 (60%), Positives = 62/95 (65%)
Frame = +3 / -2
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 477 FKWTTLLIPPTTILIINLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGL 298
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI + ILLASIFS I P +
Sbjct: 297 MGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTR 193
Score = 116 bits (247), Expect = 5e-026
Identities = 51/92 (55%), Positives = 58/92 (63%)
Frame = -2 / +2
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK++A RM +VGV FC P PLR GY ITQ AKKSFP GPHD P
Sbjct: 206 GSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIITQKAKKSFPKSGPHD**P 385
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
+LIA E PATTP + VVGGI +VVHLN+
Sbjct: 386 MLIA*EVPATTPTRLMIKIVVGGIRRVVHLNM 481
>gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i06 3', mRNA sequence
Length = 658
Score = 135 bits (289), Expect = 8e-032
Identities = 57/95 (60%), Positives = 62/95 (65%)
Frame = +3 / -1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 484 FKWTTLLIPPTTILIINLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGL 305
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI + ILLASIFS I P +
Sbjct: 304 MGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTR 200
Score = 116 bits (247), Expect = 5e-026
Identities = 51/92 (55%), Positives = 58/92 (63%)
Frame = -2 / +3
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK++A RM +VGV FC P PLR GY ITQ AKKSFP GPHD P
Sbjct: 213 GSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIITQKAKKSFPKSGPHD**P 392
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
+LIA E PATTP + VVGGI +VVHLN+
Sbjct: 393 MLIA*EVPATTPTRLMIKIVVGGIRRVVHLNM 488
>gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. vulgare cDNA clone HI05L24
3-PRIME, mRNA sequence
Length = 539
Score = 134 bits (288), Expect = 1e-031
Identities = 55/95 (57%), Positives = 62/95 (65%)
Frame = +3 / -3
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKG
Sbjct: 495 FKWTTLFIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGF 316
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI I +LLASIFS + P +
Sbjct: 315 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 211
Score = 117 bits (251), Expect = 1e-026
Identities = 54/92 (58%), Positives = 57/92 (61%)
Frame = -2 / +2
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP KPLRKGY ITQ AKKSFP GP D P
Sbjct: 224 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIKPLRKGYK*TITQKAKKSFPKSGPQDW*P 403
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LL+A E PATTP VVGG+ VVHLN+
Sbjct: 404 LLMA*EVPATTPTMLMIKMVVGGMKSVVHLNM 499
>gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. vulgare cDNA clone HF13B10
5-PRIME, mRNA sequence
Length = 622
Score = 134 bits (288), Expect = 1e-031
Identities = 55/83 (66%), Positives = 60/83 (72%)
Frame = +3 / +3
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 357 FKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGL 536
Query: 186 VGRQNRTPTIXIXXXILLASIFS 254
+GRQNRTPTI + ILLASIFS
Sbjct: 537 MGRQNRTPTIVVVWAILLASIFS 605
Score = 114 bits (243), Expect = 2e-025
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = -2 / -1
Query: 253 EKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYPLLIALETP 74
EK++A RM +VGV FC P PLR GY ITQ AKKSFP GPHD PLLIA E P
Sbjct: 604 EKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIITQKAKKSFPKSGPHD**PLLIA*EVP 425
Query: 73 ATTPMKFNRSKVVGGINKVVHLNV 2
ATTP + VVGGI +VVHLN+
Sbjct: 424 ATTPTRLMIKIVVGGIRRVVHLNM 353
>gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01M13
5-PRIME, mRNA sequence
Length = 653
Score = 134 bits (287), Expect = 1e-031
Identities = 56/95 (58%), Positives = 62/95 (65%)
Frame = +3 / +3
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 285 FKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGL 464
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXPXXAK 290
+GRQNRTPTI + ILLA IFS I P +
Sbjct: 465 MGRQNRTPTIVVVWAILLAYIFSLLWVRIDPFTTR 569
Score = 115 bits (245), Expect = 9e-026
Identities = 52/92 (56%), Positives = 57/92 (61%)
Frame = -2 / -2
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK+ A RM +VGV FC P PLR GY ITQ AKKSFP GPHD P
Sbjct: 556 GSMRTHSKEKMYARRMAQTTTMVGVRFCRPISPLRNGYKWIITQKAKKSFPKSGPHD**P 377
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLNV 2
LLIA E PATTP + VVGGI +VVHLN+
Sbjct: 376 LLIA*EVPATTPTRLMIKIVVGGIRRVVHLNM 281
>gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020M07f, mRNA sequence
Length = 533
Score = 133 bits (284), Expect = 4e-031
Identities = 52/83 (62%), Positives = 60/83 (72%)
Frame = +3 / +3
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +G+VAGVS+A+NNGY SWGP FGKLFF+FWVI LYPFLKGL
Sbjct: 264 FKWTTLLIPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGL 443
Query: 186 VGRQNRTPTIXIXXXILLASIFS 254
+GRQNRTPTI + +LLA IFS
Sbjct: 444 MGRQNRTPTIVVLWSVLLAYIFS 512
Score = 100 bits (214), Expect = 2e-021
Identities = 45/82 (54%), Positives = 51/82 (62%)
Frame = -2 / -2
Query: 253 EKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYPLLIALETP 74
EK+ ASR +VGV FCLP PLR G +TQ KKSFP GP D YPLL A +TP
Sbjct: 511 EKM*ASRTDQSTTMVGVRFCLPMSPLRNG*R*TMTQKEKKSFPKSGPQDPYPLLTASDTP 332
Query: 73 ATTPMKFNRSKVVGGINKVVHL 8
AT P VVGGI++VVHL
Sbjct: 331 ATMPTMLIMMSVVGGISRVVHL 266
>gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109B12_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 880
Score = 132 bits (282), Expect = 7e-031
Identities = 54/83 (65%), Positives = 59/83 (71%)
Frame = +3 / +2
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL
Sbjct: 554 FKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 733
Query: 186 VGRQNRTPTIXIXXXILLASIFS 254
+G QNRTPTI I +LLASIFS
Sbjct: 734 MGXQNRTPTIVIVWAVLLASIFS 802
Score = 111 bits (236), Expect = 2e-024
Identities = 50/84 (59%), Positives = 54/84 (64%)
Frame = -2 / -2
Query: 253 EKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYPLLIALETP 74
EKIEA R IVGV FC P +PLRKGY ITQ AKKSFP GP D PLL+A E P
Sbjct: 801 EKIEARRTAQTMTIVGVRFCXPIRPLRKGYK*TITQKAKKSFPKSGPQDW*PLLMA*EVP 622
Query: 73 ATTPMKFNRSKVVGGINKVVHLNV 2
ATTP VVGG+ VVHLN+
Sbjct: 621 ATTPTMLMIKMVVGGMRSVVHLNM 550
>gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. vulgare cDNA clone HB03H16
5-PRIME, mRNA sequence
Length = 471
Score = 132 bits (282), Expect = 7e-031
Identities = 54/79 (68%), Positives = 60/79 (75%)
Frame = +3 / +2
Query: 54 NFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGLVGRQNRTPTIXIXXXI 233
N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL+GRQNRTPTI + I
Sbjct: 14 NLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAI 193
Query: 234 LLASIFSXXXXXIXPXXAK 290
LLASIFS I P +
Sbjct: 194 LLASIFSLLWVRIDPFTTR 250
>gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16T 5', mRNA sequence
Length = 700
Score = 131 bits (281), Expect = 1e-030
Identities = 54/91 (59%), Positives = 62/91 (68%)
Frame = +3 / +3
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +G+VAG+S AIN+GY+SWGP FGKLFF+ WVI LYPFLKGL
Sbjct: 321 FKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGL 500
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXP 278
+G+QNRTPTI I ILLASIFS I P
Sbjct: 501 MGKQNRTPTIVIVWSILLASIFSLLWVKIDP 593
Score = 100 bits (213), Expect = 2e-021
Identities = 45/91 (49%), Positives = 55/91 (60%)
Frame = -2 / -1
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK+EA R+ +VGV FC P +PLRKG ITQ KKSFP GP D P
Sbjct: 592 GSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGPQDW*P 413
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLN 5
LL+A + PAT P + VVGG+ ++VHLN
Sbjct: 412 LLMAYDMPATMPTRLITRTVVGGMRRLVHLN 320
>gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 3', mRNA sequence
Length = 598
Score = 131 bits (281), Expect = 1e-030
Identities = 53/79 (67%), Positives = 60/79 (75%)
Frame = +3 / -2
Query: 54 NFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGLVGRQNRTPTIXIXXXI 233
N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL+GRQNRTPTI I +
Sbjct: 573 NMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAV 394
Query: 234 LLASIFSXXXXXIXPXXAK 290
LLASIFS + P +
Sbjct: 393 LLASIFSLLWVRVDPFTTR 337
Score = 103 bits (220), Expect = 3e-022
Identities = 48/83 (57%), Positives = 50/83 (60%)
Frame = -2 / +2
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 350 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 529
Query: 97 LLIALETPATTPMKFNRSKVVGG 29
LL+A E PATTP VVGG
Sbjct: 530 LLMA*EVPATTPTMLMIKMVVGG 598
>gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 3', mRNA sequence
Length = 631
Score = 131 bits (281), Expect = 1e-030
Identities = 53/79 (67%), Positives = 60/79 (75%)
Frame = +3 / -3
Query: 54 NFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGLVGRQNRTPTIXIXXXI 233
N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL+GRQNRTPTI I +
Sbjct: 590 NMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAV 411
Query: 234 LLASIFSXXXXXIXPXXAK 290
LLASIFS + P +
Sbjct: 410 LLASIFSLLWVRVDPFTTR 354
Score = 107 bits (229), Expect = 1e-023
Identities = 50/88 (56%), Positives = 53/88 (60%)
Frame = -2 / +1
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 367 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 546
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVV 14
LL+A E PATTP VVGG+ VV
Sbjct: 547 LLMA*EVPATTPTMLMIKMVVGGMRSVV 630
>gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10e13 3', mRNA sequence
Length = 616
Score = 131 bits (281), Expect = 1e-030
Identities = 53/79 (67%), Positives = 60/79 (75%)
Frame = +3 / -2
Query: 54 NFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGLVGRQNRTPTIXIXXXI 233
N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL+GRQNRTPTI I +
Sbjct: 576 NMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAV 397
Query: 234 LLASIFSXXXXXIXPXXAK 290
LLASIFS + P +
Sbjct: 396 LLASIFSLLWVRVDPFTTR 340
Score = 107 bits (229), Expect = 1e-023
Identities = 50/88 (56%), Positives = 53/88 (60%)
Frame = -2 / +2
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EKIEA R IVGV FCLP +PLRKGY ITQ AKKSFP GP D P
Sbjct: 353 GSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TITQKAKKSFPKSGPQDW*P 532
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVV 14
LL+A E PATTP VVGG+ VV
Sbjct: 533 LLMA*EVPATTPTMLMIKMVVGGMRSVV 616
>gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. vulgare cDNA clone HI05F03
3-PRIME, mRNA sequence
Length = 539
Score = 131 bits (281), Expect = 1e-030
Identities = 54/91 (59%), Positives = 62/91 (68%)
Frame = +3 / -1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +G+VAG+S AIN+GY+SWGP FGKLFF+ WVI LYPFLKGL
Sbjct: 452 FKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGL 273
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXP 278
+G+QNRTPTI I ILLASIFS I P
Sbjct: 272 MGKQNRTPTIVIVWSILLASIFSLLWVKIDP 180
Score = 100 bits (213), Expect = 2e-021
Identities = 45/91 (49%), Positives = 55/91 (60%)
Frame = -2 / +1
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK+EA R+ +VGV FC P +PLRKG ITQ KKSFP GP D P
Sbjct: 181 GSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGPQDW*P 360
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLN 5
LL+A + PAT P + VVGG+ ++VHLN
Sbjct: 361 LLMAYDMPATMPTRLITRTVVGGMRRLVHLN 453
>gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_L20 5', mRNA sequence
Length = 538
Score = 131 bits (281), Expect = 1e-030
Identities = 53/79 (67%), Positives = 60/79 (75%)
Frame = +3 / +2
Query: 54 NFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGLVGRQNRTPTIXIXXXI 233
N +GVVAG S AIN+GY+SWGP FGKLFFAFWVI LYPFLKGL+GRQNRTPTI I +
Sbjct: 11 NMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAV 190
Query: 234 LLASIFSXXXXXIXPXXAK 290
LLASIFS + P +
Sbjct: 191 LLASIFSLLWVRVDPFTTR 247
>gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
5-PRIME, mRNA sequence
Length = 617
Score = 131 bits (281), Expect = 1e-030
Identities = 54/91 (59%), Positives = 62/91 (68%)
Frame = +3 / +2
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +G+VAG+S AIN+GY+SWGP FGKLFF+ WVI LYPFLKGL
Sbjct: 329 FKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGL 508
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXP 278
+G+QNRTPTI I ILLASIFS I P
Sbjct: 509 MGKQNRTPTIVIVWSILLASIFSLLWVKIDP 601
Score = 100 bits (213), Expect = 2e-021
Identities = 45/91 (49%), Positives = 55/91 (60%)
Frame = -2 / -3
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK+EA R+ +VGV FC P +PLRKG ITQ KKSFP GP D P
Sbjct: 600 GSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGPQDW*P 421
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLN 5
LL+A + PAT P + VVGG+ ++VHLN
Sbjct: 420 LLMAYDMPATMPTRLITRTVVGGMRRLVHLN 328
>gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
5-PRIME, mRNA sequence
Length = 638
Score = 131 bits (281), Expect = 1e-030
Identities = 54/91 (59%), Positives = 62/91 (68%)
Frame = +3 / +2
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +G+VAG+S AIN+GY+SWGP FGKLFF+ WVI LYPFLKGL
Sbjct: 329 FKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGL 508
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXP 278
+G+QNRTPTI I ILLASIFS I P
Sbjct: 509 MGKQNRTPTIVIVWSILLASIFSLLWVKIDP 601
Score = 100 bits (213), Expect = 2e-021
Identities = 45/91 (49%), Positives = 55/91 (60%)
Frame = -2 / -3
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK+EA R+ +VGV FC P +PLRKG ITQ KKSFP GP D P
Sbjct: 600 GSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGPQDW*P 421
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLN 5
LL+A + PAT P + VVGG+ ++VHLN
Sbjct: 420 LLMAYDMPATMPTRLITRTVVGGMRRLVHLN 328
>gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
3-PRIME, mRNA sequence
Length = 652
Score = 131 bits (281), Expect = 1e-030
Identities = 54/91 (59%), Positives = 62/91 (68%)
Frame = +3 / -1
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +G+VAG+S AIN+GY+SWGP FGKLFF+ WVI LYPFLKGL
Sbjct: 631 FKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGL 452
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXP 278
+G+QNRTPTI I ILLASIFS I P
Sbjct: 451 MGKQNRTPTIVIVWSILLASIFSLLWVKIDP 359
Score = 100 bits (213), Expect = 2e-021
Identities = 45/91 (49%), Positives = 55/91 (60%)
Frame = -2 / +3
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK+EA R+ +VGV FC P +PLRKG ITQ KKSFP GP D P
Sbjct: 360 GSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGPQDW*P 539
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLN 5
LL+A + PAT P + VVGG+ ++VHLN
Sbjct: 540 LLMAYDMPATMPTRLITRTVVGGMRRLVHLN 632
>gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
3-PRIME, mRNA sequence
Length = 654
Score = 131 bits (281), Expect = 1e-030
Identities = 54/91 (59%), Positives = 62/91 (68%)
Frame = +3 / -2
Query: 6 FKWXXXXXXXXXXXXXNFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGL 185
FKW N +G+VAG+S AIN+GY+SWGP FGKLFF+ WVI LYPFLKGL
Sbjct: 632 FKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGL 453
Query: 186 VGRQNRTPTIXIXXXILLASIFSXXXXXIXP 278
+G+QNRTPTI I ILLASIFS I P
Sbjct: 452 MGKQNRTPTIVIVWSILLASIFSLLWVKIDP 360
Score = 100 bits (213), Expect = 2e-021
Identities = 45/91 (49%), Positives = 55/91 (60%)
Frame = -2 / +1
Query: 277 GSXXXXXXEKIEASRMXXXXXIVGVLFCLPTKPLRKGYXXXITQNAKKSFPXXGPHDSYP 98
GS EK+EA R+ +VGV FC P +PLRKG ITQ KKSFP GP D P
Sbjct: 361 GSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGPQDW*P 540
Query: 97 LLIALETPATTPMKFNRSKVVGGINKVVHLN 5
LL+A + PAT P + VVGG+ ++VHLN
Sbjct: 541 LLMAYDMPATMPTRLITRTVVGGMRRLVHLN 633
>gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0017H01f, mRNA sequence
Length = 755
Score = 126 bits (270), Expect = 3e-029
Identities = 51/75 (68%), Positives = 59/75 (78%)
Frame = +3 / +1
Query: 54 NFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGLVGRQNRTPTIXIXXXI 233
N +G+VAG+S AIN+GY+SWGP FGKLFF+ WVI LYPFLKGL+G+QNRTPTI I I
Sbjct: 13 NLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSI 192
Query: 234 LLASIFSXXXXXIXP 278
LLASIFS I P
Sbjct: 193 LLASIFSLLWVKIDP 237
>gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20p06 3', mRNA sequence
Length = 509
Score = 126 bits (270), Expect = 3e-029
Identities = 51/75 (68%), Positives = 59/75 (78%)
Frame = +3 / -2
Query: 54 NFIGVVAGVSNAINNGYESWGPXFGKLFFAFWVIXXLYPFLKGLVGRQNRTPTIXIXXXI 233
N +G+VAG+S AIN+GY+SWGP FGKLFF+ WVI LYPFLKGL+G+QNRTPTI I I
Sbjct: 502 NLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSI 323
Query: 234 LLASIFSXXXXXIXP 278
LLASIFS I P
Sbjct: 322 LLASIFSLLWVKIDP 278
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 110,488,681
Number of Sequences: 312970
Number of extensions: 1275711
Number of successful extensions: 102636
Number of sequences better than 1.0e-020: 84
length of database: 58,378,179
effective HSP length: 48
effective length of database: 43,355,619
effective search space used: 2081069712
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)