TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD4g02.sg.2.1
(308 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. v... 241 9e-064
gb|BU975384.1|BU975384 HB31F04r BC Hordeum vulgare subsp. v... 241 9e-064
gb|BE420919.1|BE420919 HWM003.H08 ITEC HWM Barley Leaf Libr... 138 4e-057
gb|BM816328.1|BM816328 HC108D12_SK.ab1 HC Hordeum vulgare s... 204 2e-052
gb|CA013755.1|CA013755 HT09G07r HT Hordeum vulgare subsp. v... 186 4e-047
gb|BE558753.3|BE558753 HV_CEb0020E08f Hordeum vulgare seedl... 162 5e-040
gb|BM371846.2|BM371846 EBma08_SQ004_C16_R maternal, 28 DPA,... 149 5e-036
gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. v... 139 6e-035
gb|BI952869.1|BI952869 HVSMEm0008B04f Hordeum vulgare green... 144 2e-034
gb|CA013080.1|CA013080 HT07F09r HT Hordeum vulgare subsp. v... 142 5e-034
gb|BJ463662.1|BJ463662 BJ463662 K. Sato unpublished cDNA li... 140 3e-033
gb|CA015170.1|CA015170 HT13H22r HT Hordeum vulgare subsp. v... 132 8e-031
gb|BM816326.1|BM816326 HB02F03_T3.ab1 HB Hordeum vulgare su... 124 5e-030
gb|CA013134.1|CA013134 HT07H24r HT Hordeum vulgare subsp. v... 122 5e-028
gb|CB882476.1|CB882476 HL01P12w HL Hordeum vulgare subsp. v... 117 2e-026
gb|CK123613.1|CK123613 BES1824104l12 BES1824 Hordeum vulgar... 116 4e-026
gb|BM816327.1|BM816327 HB106A04_SK.ab1 HB Hordeum vulgare s... 105 1e-023
gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. v... 102 5e-022
gb|BE216452.2|BE216452 HV_CEb0010I13f Hordeum vulgare seedl... 102 7e-022
>gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. vulgare cDNA clone HB19L11
5-PRIME, mRNA sequence
Length = 569
Score = 241 bits (521), Expect = 9e-064
Identities = 95/102 (93%), Positives = 97/102 (95%)
Frame = -2 / +1
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTEEFPL ATNPYGRTKLVIEDICRD+ RSDPDWKIILLRYFNPVGAHPSGYIGEDP G
Sbjct: 97 PCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRYFNPVGAHPSGYIGEDPLG 276
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
VPNNLMPYVQQVAVGR P LTVYGTDY+TKDGTGVRDYIHVV
Sbjct: 277 VPNNLMPYVQQVAVGRRPALTVYGTDYNTKDGTGVRDYIHVV 402
Score = 156 bits (335), Expect(2) = 9e-040
Identities = 68/78 (87%), Positives = 71/78 (91%)
Frame = +3 / -1
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC T*GIRL GTP+GSSPM PLG*APTGLKYLSSMIFQSGSERW SRQMSS+TS
Sbjct: 329 GRLPTATCWT*GIRLLGTPRGSSPM*PLG*APTGLKYLSSMIFQSGSERWRSRQMSSMTS 150
Query: 255 FVRP*GLVAQSGNSSVHG 308
FVRP GLVA+SGNSSV G
Sbjct: 149 FVRPYGLVAESGNSSVQG 96
Score = 115 bits (246), Expect = 7e-026
Identities = 51/101 (50%), Positives = 58/101 (57%)
Frame = +1 / -2
Query: 1 RQRGCNHAPQSHPWCCSPSRRP*GEVTSQQRLAARRASGCSGHRRGLRRCTRLDERQRG* 180
+Q GC+H P HPWCCS SR+P + S+QRLA RASGC G + GL RC+ ERQ G*
Sbjct: 403 QQHGCSHVPLFHPWCCSRSRKPSAQAASRQRLAGHRASGCWGLQGGLPRCSHSGERQLG* 224
Query: 181 ST*AVXXXXXXXXXXXXXXCLQSQALSAHRDWWRRAGILRC 303
ST AV CLQ QAL W RRAG RC
Sbjct: 223 STSAV*SSSRGPSAGGHGRCLQ*QALFGRTGWSRRAGTPRC 101
Score = 105 bits (224), Expect = 8e-023
Identities = 55/100 (55%), Positives = 58/100 (58%)
Frame = -3 / +2
Query: 303 APKNSRSAPPIPMGGQSL*LKXXXXXXXXXXXTGRSYCSGTSTPLALIQAGTSAKTPAVS 124
AP++SRS P QSL LK TGRSYC GTST LAL + TS KTP S
Sbjct: 101 APRSSRSPRPTRTAEQSLSLKTSAVTSSARTPTGRSYC*GTSTQLALTRVATSGKTPLES 280
Query: 123 RTT*CPTCSKSLLGGYLTSRSTGRTTAPRMGLGCVITSTL 4
TT*CP SKSL GG L R TG TT PRM G V TS L
Sbjct: 281 PTT*CPMSSKSLSGGGLR*RFTGPTTTPRMEQGYVTTSML 400
Score = 24.4 bits (47), Expect(2) = 9e-040
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2 / -3
Query: 2 DNVDVITHPSPILG 43
+N+DV+T+P ILG
Sbjct: 402 NNMDVVTYPCSILG 361
>gb|BU975384.1|BU975384 HB31F04r BC Hordeum vulgare subsp. vulgare cDNA clone HB31F04
5-PRIME, mRNA sequence
Length = 501
Score = 241 bits (521), Expect = 9e-064
Identities = 95/102 (93%), Positives = 97/102 (95%)
Frame = -2 / +1
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTEEFPL ATNPYGRTKLVIEDICRD+ RSDPDWKIILLRYFNPVGAHPSGYIGEDP G
Sbjct: 160 PCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRYFNPVGAHPSGYIGEDPLG 339
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
VPNNLMPYVQQVAVGR P LTVYGTDY+TKDGTGVRDYIHVV
Sbjct: 340 VPNNLMPYVQQVAVGRRPALTVYGTDYNTKDGTGVRDYIHVV 465
Score = 156 bits (335), Expect(2) = 8e-040
Identities = 68/78 (87%), Positives = 71/78 (91%)
Frame = +3 / -2
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC T*GIRL GTP+GSSPM PLG*APTGLKYLSSMIFQSGSERW SRQMSS+TS
Sbjct: 392 GRLPTATCWT*GIRLLGTPRGSSPM*PLG*APTGLKYLSSMIFQSGSERWRSRQMSSMTS 213
Query: 255 FVRP*GLVAQSGNSSVHG 308
FVRP GLVA+SGNSSV G
Sbjct: 212 FVRPYGLVAESGNSSVQG 159
Score = 115 bits (246), Expect = 7e-026
Identities = 51/101 (50%), Positives = 58/101 (57%)
Frame = +1 / -3
Query: 1 RQRGCNHAPQSHPWCCSPSRRP*GEVTSQQRLAARRASGCSGHRRGLRRCTRLDERQRG* 180
+Q GC+H P HPWCCS SR+P + S+QRLA RASGC G + GL RC+ ERQ G*
Sbjct: 466 QQHGCSHVPLFHPWCCSRSRKPSAQAASRQRLAGHRASGCWGLQGGLPRCSHSGERQLG* 287
Query: 181 ST*AVXXXXXXXXXXXXXXCLQSQALSAHRDWWRRAGILRC 303
ST AV CLQ QAL W RRAG RC
Sbjct: 286 STSAV*SSSRGPSAGGHGRCLQ*QALFGRTGWSRRAGTPRC 164
Score = 105 bits (224), Expect = 8e-023
Identities = 55/100 (55%), Positives = 58/100 (58%)
Frame = -3 / +2
Query: 303 APKNSRSAPPIPMGGQSL*LKXXXXXXXXXXXTGRSYCSGTSTPLALIQAGTSAKTPAVS 124
AP++SRS P QSL LK TGRSYC GTST LAL + TS KTP S
Sbjct: 164 APRSSRSPRPTRTAEQSLSLKTSAVTSSARTPTGRSYC*GTSTQLALTRVATSGKTPLES 343
Query: 123 RTT*CPTCSKSLLGGYLTSRSTGRTTAPRMGLGCVITSTL 4
TT*CP SKSL GG L R TG TT PRM G V TS L
Sbjct: 344 PTT*CPMSSKSLSGGGLR*RFTGPTTTPRMEQGYVTTSML 463
Score = 24.4 bits (47), Expect(2) = 8e-040
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2 / -1
Query: 2 DNVDVITHPSPILG 43
+N+DV+T+P ILG
Sbjct: 465 NNMDVVTYPCSILG 424
>gb|BE420919.1|BE420919 HWM003.H08 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM003.H08, mRNA sequence
Length = 1212
Score = 138 bits (295), Expect(2) = 4e-057
Identities = 53/61 (86%), Positives = 54/61 (88%)
Frame = -2 / +1
Query: 304 CTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGV 125
CTEE PL TNPYGRTKLVIEDICRD+ RSDPDWKIILLRYFNPVGAHPSGYIGEDP
Sbjct: 43 CTEELPLSGTNPYGRTKLVIEDICRDLQRSDPDWKIILLRYFNPVGAHPSGYIGEDPLRS 222
Query: 124 P 122
P
Sbjct: 223 P 225
Score = 113 bits (242), Expect(2) = 2e-042
Identities = 50/61 (81%), Positives = 55/61 (90%)
Frame = +3 / -2
Query: 120 FGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITSFVRP*GLVAQSGNSS 299
+G +GSSPM PLG*APTGLKYLSSMIFQSGSERW SRQMSS+TSFVRP GLV +SG+SS
Sbjct: 227 WGLRRGSSPM*PLG*APTGLKYLSSMIFQSGSERWRSRQMSSMTSFVRPYGLVPESGSSS 48
Query: 300 V 302
V
Sbjct: 47 V 45
Score = 101 bits (216), Expect(2) = 4e-057
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = -2 / +2
Query: 145 GEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
G+ P GVPNNLMPYVQQVAVGR P LTVYGT Y+TKDGTGVRDYIHVV
Sbjct: 203 GKTPFGVPNNLMPYVQQVAVGRRPALTVYGTHYNTKDGTGVRDYIHVV 346
Score = 77.1 bits (162), Expect(2) = 2e-042
Identities = 28/46 (60%), Positives = 33/46 (71%)
Frame = +1 / -2
Query: 1 RQRGCNHAPQSHPWCCSPSRRP*GEVTSQQRLAARRASGCSGHRRG 138
+Q GC+H P HPWCCS SR+P + S+QRLA RASGC G RRG
Sbjct: 347 QQHGCSHVPLFHPWCCSGSRKPSAQAASRQRLAGHRASGCWGLRRG 210
Score = 67.0 bits (140), Expect(2) = 3e-023
Identities = 27/41 (65%), Positives = 29/41 (70%)
Frame = -1 / +1
Query: 125 PEQPDALRAASRCWEVTSPHGLRDGLQHQGWDWGA*LHPRC 3
P+QPDAL ASRC E GLRD LQHQGW+ G *LHP C
Sbjct: 223 PQQPDALCPASRCREAACADGLRDPLQHQGWNRGT*LHPCC 345
Score = 59.3 bits (123), Expect(2) = 3e-023
Identities = 29/57 (50%), Positives = 32/57 (56%)
Frame = -3 / +2
Query: 303 APKNSRSAPPIPMGGQSL*LKXXXXXXXXXXXTGRSYCSGTSTPLALIQAGTSAKTP 133
AP++SRS P QSL LK TGRSYC GTST LAL + TS KTP
Sbjct: 44 APRSSRSPGPTRTAEQSLSLKTSAVTSSARTPTGRSYC*GTSTQLALTRVATSGKTP 214
>gb|BM816328.1|BM816328 HC108D12_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108D12_SK.ab1 similar to UDP-glucose
4-epimerase,Aldose 1-epimerase,, mRNA sequence
Length = 860
Score = 204 bits (439), Expect = 2e-052
Identities = 79/87 (90%), Positives = 82/87 (94%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTEEFPL ATNPYGRTKLVIEDICRD+ RSDPDW+IILLRYFNPVGAHPSGYIGEDP G
Sbjct: 600 PCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWEIILLRYFNPVGAHPSGYIGEDPLG 779
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDY 47
VPNNLMPYVQQVAVG+ P LTVYGTDY
Sbjct: 780 VPNNLMPYVQQVAVGKXPALTVYGTDY 860
Score = 147 bits (315), Expect = 2e-035
Identities = 65/78 (83%), Positives = 67/78 (85%)
Frame = +3 / -2
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G PTATC T*GIRL GTP GSSPM PLG APTGLKYLSSMI QSGSERW SRQMSS+TS
Sbjct: 832 GXFPTATCWT*GIRLLGTPXGSSPM*PLGWAPTGLKYLSSMISQSGSERWRSRQMSSMTS 653
Query: 255 FVRP*GLVAQSGNSSVHG 308
FVRP GLVA+SGNSSV G
Sbjct: 652 FVRPYGLVAESGNSSVQG 599
>gb|CA013755.1|CA013755 HT09G07r HT Hordeum vulgare subsp. vulgare cDNA clone HT09G07
5-PRIME, mRNA sequence
Length = 530
Score = 186 bits (400), Expect = 4e-047
Identities = 71/102 (69%), Positives = 83/102 (81%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+ PL A NPYGRTKL +E++ RD ++P+W+ ILLRYFNP+GAH SG IGEDP G
Sbjct: 188 PCVEDSPLKALNPYGRTKLYLEEMLRDYQHANPEWRTILLRYFNPIGAHQSGDIGEDPKG 367
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
VPNNL+PY+QQVAVGR P L VYG DY T+DGT VRDYIHVV
Sbjct: 368 VPNNLLPYIQQVAVGRRPELNVYGHDYRTRDGTAVRDYIHVV 493
>gb|BE558753.3|BE558753 HV_CEb0020E08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020E08f, mRNA sequence
Length = 790
Score = 162 bits (349), Expect = 5e-040
Identities = 60/77 (77%), Positives = 72/77 (93%)
Frame = -2 / +1
Query: 232 RDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGT 53
RD++RSD +W+IILLRYFNPVGAHPSGY+GEDP GVPNNLMP+VQQVAVGR P +T++G
Sbjct: 1 RDIYRSDSEWRIILLRYFNPVGAHPSGYLGEDPRGVPNNLMPFVQQVAVGRRPSVTIFGN 180
Query: 52 DYSTKDGTGVRDYIHVV 2
+Y+TKDGTGVRDYIHV+
Sbjct: 181 NYATKDGTGVRDYIHVL 231
>gb|BM371846.2|BM371846 EBma08_SQ004_C16_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ004_C16 5', mRNA sequence
Length = 398
Score = 149 bits (320), Expect = 5e-036
Identities = 59/63 (93%), Positives = 60/63 (95%)
Frame = -2 / +1
Query: 190 LRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYI 11
LRYFNPVGAHPSGYIGEDP GVPNNLMPYVQQVAVGR P LTVYGTDY+TKDGTGVRDYI
Sbjct: 1 LRYFNPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPALTVYGTDYNTKDGTGVRDYI 180
Query: 10 HVV 2
HVV
Sbjct: 181 HVV 189
>gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. vulgare cDNA clone HT08A11
5-PRIME, mRNA sequence
Length = 646
Score = 139 bits (298), Expect(2) = 6e-035
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = -2 / +3
Query: 178 NPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
NPVGAHPSGYIGEDP GVPNNLMPYVQQVAVGR P LTVYGTDY+TKDGTGVRDYIHVV
Sbjct: 57 NPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPALTVYGTDYNTKDGTGVRDYIHVV 233
Score = 25.4 bits (49), Expect(2) = 6e-035
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / +2
Query: 226 VHRSDPDWKI 197
+ RSDPDWKI
Sbjct: 11 LQRSDPDWKI 40
>gb|BI952869.1|BI952869 HVSMEm0008B04f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0008B04f, mRNA sequence
Length = 744
Score = 144 bits (308), Expect = 2e-034
Identities = 58/65 (89%), Positives = 60/65 (92%)
Frame = -2 / +1
Query: 196 ILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRD 17
IL+R FNPVGAHPSGYIGEDP GVPNNLMPYVQQVAVGR P LTVYGTDY+TKDGTGV D
Sbjct: 7 ILVRDFNPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPALTVYGTDYNTKDGTGVPD 186
Query: 16 YIHVV 2
YIHVV
Sbjct: 187 YIHVV 201
>gb|CA013080.1|CA013080 HT07F09r HT Hordeum vulgare subsp. vulgare cDNA clone HT07F09
5-PRIME, mRNA sequence
Length = 637
Score = 142 bits (305), Expect = 5e-034
Identities = 54/72 (75%), Positives = 62/72 (86%)
Frame = -2 / +1
Query: 217 SDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTK 38
++P+W+ ILLRYFNP+GAH SG IGEDP GVPNNL+PY+QQVAVGR P L VYG DY T+
Sbjct: 28 ANPEWRTILLRYFNPIGAHQSGDIGEDPKGVPNNLLPYIQQVAVGRRPELNVYGHDYRTR 207
Query: 37 DGTGVRDYIHVV 2
DGT VRDYIHVV
Sbjct: 208 DGTAVRDYIHVV 243
>gb|BJ463662.1|BJ463662 BJ463662 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32p11 5', mRNA sequence
Length = 540
Score = 140 bits (300), Expect = 3e-033
Identities = 53/65 (81%), Positives = 61/65 (93%)
Frame = -2 / +1
Query: 196 ILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRD 17
ILLRYFNPVGAHPSGY+GEDP GVPNNLMP+VQQVAVGR P +T++G +Y+TKDGTGVRD
Sbjct: 61 ILLRYFNPVGAHPSGYLGEDPRGVPNNLMPFVQQVAVGRRPSVTIFGNNYATKDGTGVRD 240
Query: 16 YIHVV 2
YIHV+
Sbjct: 241 YIHVL 255
>gb|CA015170.1|CA015170 HT13H22r HT Hordeum vulgare subsp. vulgare cDNA clone HT13H22
5-PRIME, mRNA sequence
Length = 640
Score = 132 bits (282), Expect = 8e-031
Identities = 50/53 (94%), Positives = 51/53 (96%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGY 149
PCTEEFPL ATNPYGRTKLVIEDICRD+ RSDPDWKIILLRYFNPVGAHPSGY
Sbjct: 480 PCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRYFNPVGAHPSGY 638
Score = 109 bits (232), Expect = 6e-024
Identities = 48/54 (88%), Positives = 50/54 (92%)
Frame = +3 / -1
Query: 147 MYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITSFVRP*GLVAQSGNSSVHG 308
M PLG*APTGLKYLSSMIFQSGSERW SRQMSS+TSFVRP GLVA+SGNSSV G
Sbjct: 640 M*PLG*APTGLKYLSSMIFQSGSERWRSRQMSSMTSFVRPYGLVAESGNSSVQG 479
>gb|BM816326.1|BM816326 HB02F03_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB02F03_T3.ab1 similar to UDP-glucose 4-epimerase,Aldose
1-epimerase,, mRNA sequence
Length = 815
Score = 124 bits (266), Expect(2) = 5e-030
Identities = 47/58 (81%), Positives = 50/58 (86%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDP 134
PCTEEFPL ATNPYGRTKLVIEDICRD+ RSDPDWKIILLRYFNP G HP +G+ P
Sbjct: 600 PCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRYFNPXGRHPVATLGKTP 773
Score = 99.1 bits (210), Expect = 7e-021
Identities = 44/59 (74%), Positives = 47/59 (79%)
Frame = +3 / -2
Query: 132 QGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITSFVRP*GLVAQSGNSSVHG 308
+G P G P GLKYLSSMIFQSGSERW SRQMSS+TSFVRP GLVA+SGNSSV G
Sbjct: 775 KGVFPNVATGWRPXGLKYLSSMIFQSGSERWRSRQMSSMTSFVRPYGLVAESGNSSVQG 599
Score = 24.4 bits (47), Expect(2) = 5e-030
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / +1
Query: 124 PNNLMPYVQQ 95
PNNLMPYV +
Sbjct: 781 PNNLMPYVHR 810
>gb|CA013134.1|CA013134 HT07H24r HT Hordeum vulgare subsp. vulgare cDNA clone HT07H24
5-PRIME, mRNA sequence
Length = 566
Score = 122 bits (262), Expect = 5e-028
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = -2 / +1
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPS 155
PCTEE PL ATNPYGRTKLVIEDICRD+ RSDPDWKIILLRYFNPVGAHPS
Sbjct: 412 PCTEEXPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRYFNPVGAHPS 564
Score = 108 bits (231), Expect = 9e-024
Identities = 47/52 (90%), Positives = 49/52 (94%)
Frame = +3 / -1
Query: 153 PLG*APTGLKYLSSMIFQSGSERWTSRQMSSITSFVRP*GLVAQSGNSSVHG 308
PLG*APTGLKYLSSMIFQSGSERW SRQMSS+TSFVRP GLVA+SGNSSV G
Sbjct: 566 PLG*APTGLKYLSSMIFQSGSERWRSRQMSSMTSFVRPYGLVAESGNSSVQG 411
>gb|CB882476.1|CB882476 HL01P12w HL Hordeum vulgare subsp. vulgare cDNA clone HL01P12
3-PRIME, mRNA sequence
Length = 628
Score = 117 bits (250), Expect = 2e-026
Identities = 45/48 (93%), Positives = 46/48 (95%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGA 164
PCTEEFPL ATNPYGRTKLVIEDICRD+ RSDPDWKIILLRYFNPVGA
Sbjct: 485 PCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRYFNPVGA 628
Score = 100 bits (213), Expect = 3e-021
Identities = 43/48 (89%), Positives = 45/48 (93%)
Frame = +3 / -2
Query: 165 APTGLKYLSSMIFQSGSERWTSRQMSSITSFVRP*GLVAQSGNSSVHG 308
APTGLKYLSSMIFQSGSERW SRQMSS+TSFVRP GLVA+SGNSSV G
Sbjct: 627 APTGLKYLSSMIFQSGSERWRSRQMSSMTSFVRPYGLVAESGNSSVQG 484
>gb|CK123613.1|CK123613 BES1824104l12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L124 5-PRIME, mRNA sequence
Length = 791
Score = 116 bits (248), Expect = 4e-026
Identities = 46/50 (92%), Positives = 47/50 (94%)
Frame = -2 / +3
Query: 301 TEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSG 152
TEEFPL ATNPYGRTKLVIEDI RD+ RSDPDWKIILLRYFNPVGAHPSG
Sbjct: 615 TEEFPLSATNPYGRTKLVIEDIXRDLQRSDPDWKIILLRYFNPVGAHPSG 764
Score = 105 bits (225), Expect = 6e-023
Identities = 46/50 (92%), Positives = 48/50 (96%)
Frame = +3 / -2
Query: 153 PLG*APTGLKYLSSMIFQSGSERWTSRQMSSITSFVRP*GLVAQSGNSSV 302
PLG*APTGLKYLSSMIFQSGSERW SRQMSS+TSFVRP GLVA+SGNSSV
Sbjct: 763 PLG*APTGLKYLSSMIFQSGSERWRSRQMSSMTSFVRPYGLVAESGNSSV 614
>gb|BM816327.1|BM816327 HB106A04_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB106A04_SK.ab1 similar to UDP-glucose
4-epimerase,Aldose 1-epimerase,, mRNA sequence
Length = 883
Score = 105 bits (223), Expect(2) = 1e-023
Identities = 40/43 (93%), Positives = 41/43 (95%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYF 179
PCTEEFPL ATNPYGRTKLVIEDICRD+ RSDPDWKIILLRYF
Sbjct: 614 PCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRYF 742
Score = 22.6 bits (43), Expect(2) = 1e-023
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2 / +3
Query: 178 NPVGAHPSGYIGEDPCGVPN 119
+P PSGY+ +DP P+
Sbjct: 741 SPXWRPPSGYMXKDPLESPH 800
>gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. vulgare cDNA clone HF25N16
5-PRIME, mRNA sequence
Length = 633
Score = 102 bits (218), Expect = 5e-022
Identities = 41/45 (91%), Positives = 42/45 (93%)
Frame = -2 / +3
Query: 136 PCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
P GVPNNLMPYVQQVAVGR P LTVYGTDY+TKDGTGVRDYIHVV
Sbjct: 12 PLGVPNNLMPYVQQVAVGRRPALTVYGTDYNTKDGTGVRDYIHVV 146
>gb|BE216452.2|BE216452 HV_CEb0010I13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010I13f, mRNA sequence
Length = 697
Score = 102 bits (217), Expect = 7e-022
Identities = 39/42 (92%), Positives = 40/42 (95%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRY 182
PCTEEFPL ATNPYGRTKLVIEDICRD+ RSDPDWKIILLRY
Sbjct: 572 PCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 697
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 161,485,285
Number of Sequences: 312970
Number of extensions: 2254661
Number of successful extensions: 261327
Number of sequences better than 1.0e-020: 29
length of database: 58,378,179
effective HSP length: 48
effective length of database: 43,355,619
effective search space used: 2341203426
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)