TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L20621.2.1
(1220 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF255425.2|BF255425 HVSMEf0006N05f Hordeum vulgare seedl... 100 4e-040
gb|BI960545.1|BI960545 HVSMEn0024P18f Hordeum vulgare rachi... 95 5e-039
gb|BI960547.1|BI960547 HVSMEn0024P20f Hordeum vulgare rachi... 88 9e-037
gb|BG299290.1|BG299290 HVSMEa0019D17f Hordeum vulgare seedl... 86 1e-034
gb|BF618753.2|BF618753 HVSMEc0007K17f Hordeum vulgare seedl... 92 5e-032
gb|AL506124.1|AL506124 AL506124 Hordeum vulgare Barke devel... 91 1e-031
gb|BG365695.2|BG365695 HVSMEi0003M08f Hordeum vulgare 20 DA... 88 5e-030
gb|BG367721.1|BG367721 HVSMEi0013G05f Hordeum vulgare 20 DA... 77 7e-030
gb|CA022105.1|CA022105 HZ42C21r HZ Hordeum vulgare subsp. v... 82 8e-027
gb|BM374572.2|BM374572 EBpi03_SQ003_P23_R pistil, 4 DPA, no... 65 2e-026
gb|BQ762559.1|BQ762559 EBro02_SQ004_D11_R root, 3 week, hyd... 109 2e-026
gb|BM372991.2|BM372991 EBma04_SQ002_K15_R maternal, 10 DPA,... 56 4e-025
gb|CA020535.1|CA020535 HZ36J17r HZ Hordeum vulgare subsp. v... 90 7e-025
gb|BU997747.1|BU997747 HI08O09r HI Hordeum vulgare subsp. v... 54 7e-025
gb|BU999748.1|BU999748 HI15K05r HI Hordeum vulgare subsp. v... 54 2e-023
gb|CA001536.1|CA001536 HS17E14u HS Hordeum vulgare subsp. v... 76 2e-023
gb|BM374245.2|BM374245 EBpi03_SQ003_B08_R pistil, 4 DPA, no... 63 2e-022
gb|BG301015.1|BG301015 HVSMEb0019E07f Hordeum vulgare seedl... 63 8e-022
gb|BQ660501.1|BQ660501 HI02N17u HI Hordeum vulgare subsp. v... 67 2e-021
gb|CA020976.1|CA020976 HZ38K15r HZ Hordeum vulgare subsp. v... 51 3e-021
>gb|BF255425.2|BF255425 HVSMEf0006N05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006N05f, mRNA sequence
Length = 587
Score = 99.6 bits (211), Expect(2) = 4e-029
Identities = 48/88 (54%), Positives = 52/88 (59%)
Frame = -2 / -3
Query: 796 GETQLTRTPCARSSQAAFLVSPTMACLEAV*ACGPRPPSTAATLATETMLPARRGAMARA 617
GE QLTR PC SS AAF VSPT A L V*AC PP+ A L M P R G M RA
Sbjct: 579 GEMQLTRIPCWPSSVAAFSVSPTRARLAHV*ACDATPPTADARLDVPMMQPCRAGTMTRA 400
Query: 616 ACFIPSAAPSALTRSTRSNSAASKDRML 533
AC +P P+ LT STRS S+ RML
Sbjct: 399 ACLVPRKGPTRLTASTRSKSSLVLSRML 316
Score = 98.2 bits (208), Expect(4) = 4e-040
Identities = 43/91 (47%), Positives = 51/91 (56%)
Frame = +3 / +2
Query: 525 AARSILSFDAAEFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHA 704
A SI +F+RVL VN +G LG KHAAR M P R HA
Sbjct: 308 ACHSIRDSTKEDFERVLAVNLVGPFLGTKHAARVMVPARQGCIIGTSSLASAVGGVASHA 487
Query: 705 YTASKHAIVGLTKNAACELRAHGVRVNCVSP 797
YT +K A+VGLT+NAA EL HG+RVNC+SP
Sbjct: 488 YTCAKRALVGLTENAATELGQHGIRVNCISP 580
Score = 62.5 bits (130), Expect(4) = 4e-040
Identities = 26/54 (48%), Positives = 32/54 (59%)
Frame = +3 / +2
Query: 237 KRLDGKVAIVTGGARGIGEAIVRLFAKHGARXXXXXXXXXXGEALASALGPQVS 398
++LDGKVA++TGGA GIGE RLF +HGA G L + LGP S
Sbjct: 29 RKLDGKVALITGGASGIGECTARLFVQHGASVVLADIQDDLGARLCAELGPAAS 190
Score = 51.9 bits (107), Expect(2) = 4e-029
Identities = 24/51 (47%), Positives = 26/51 (50%)
Frame = -2 / -3
Query: 388 GPXXXXXXXXXXXXXXAITTRAPCLANSRTMASPIPRAPPVTMATFPSSLL 236
GP A TT APC NSR + SP+P APPV AT PSS L
Sbjct: 180 GPSSAQRRAPRSSWMSARTTLAPCCTNSRAVHSPMPLAPPVISATLPSSFL 28
Score = 36.3 bits (73), Expect(4) = 4e-040
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3 / +2
Query: 396 SFVRCDVSVEDDVRRAVDWALSRHG 470
S+VRCDV+ E+DV AVD ++R G
Sbjct: 191 SYVRCDVTSEEDVAAAVDHTVARFG 265
Score = 24.4 bits (47), Expect(4) = 4e-040
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3 / +2
Query: 471 GRLDVYCNNAGVLGRQTRAAR 533
G+LD+ NNAG+ G + R
Sbjct: 263 GKLDIMFNNAGIGGAACHSIR 325
>gb|BI960545.1|BI960545 HVSMEn0024P18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024P18f, mRNA sequence
Length = 658
Score = 95.0 bits (201), Expect(3) = 2e-028
Identities = 47/90 (52%), Positives = 53/90 (58%)
Frame = -2 / -2
Query: 814 GVATPKGETQLTRTPCARSSQAAFLVSPTMACLEAV*ACGPRPPSTAATLATETMLPARR 635
GVAT GE QLTRTP SS AA L +P MA LE+ * PRP T L + M P R
Sbjct: 657 GVATACGEMQLTRTPWRPSSAAAALTAPAMASLESE*GYEPRPAMTPLMLPMQRMEPERA 478
Query: 634 GAMARAACFIPSAAPSALTRSTRSNSAASK 545
GAM R AC IP++ P LTR T SN S+
Sbjct: 477 GAMTRVACLIPASVPRRLTRITSSNWPRSR 388
Score = 90.0 bits (190), Expect(3) = 5e-039
Identities = 40/91 (43%), Positives = 48/91 (52%)
Frame = +3 / +2
Query: 543 SFDAAEFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYTASKH 722
+ D +FD V+RVN G G+KHA R MAP R + Y+ SK
Sbjct: 386 TLDLGQFDDVIRVNLRGTLAGIKHATRVMAPARSGSILCMGSISGVMAGLGSYPYSLSKL 565
Query: 723 AIVGLTKNAACELRAHGVRVNCVSPFGVATP 815
AI G + AA EL HGVRVNC+SP VATP
Sbjct: 566 AIAGAVRAAAAELGRHGVRVNCISPHAVATP 658
Score = 84.5 bits (178), Expect(3) = 5e-039
Identities = 37/82 (45%), Positives = 48/82 (58%)
Frame = +3 / +2
Query: 225 TPMPKRLDGKVAIVTGGARGIGEAIVRLFAKHGARXXXXXXXXXXGEALASALGPQVSFV 404
T M R++GK+A++TGGA G+G+A F + GA G A LGPQ FV
Sbjct: 74 TAMKGRMEGKIALITGGASGLGKATAHEFIQEGASVVLADINSQLGLQTAEELGPQAHFV 253
Query: 405 RCDVSVEDDVRRAVDWALSRHG 470
CDV ED+V AVD A++RHG
Sbjct: 254 HCDVVHEDNVAGAVDAAVARHG 319
Score = 44.1 bits (90), Expect(3) = 2e-028
Identities = 25/59 (42%), Positives = 26/59 (44%)
Frame = -2 / -2
Query: 400 KLTCGPXXXXXXXXXXXXXXAITTRAPCLANSRTMASPIPRAPPVTMATFPSSLLGIGV 224
K CGP A TT AP NS +A P P APPV A FPS L I V
Sbjct: 249 KWACGPSSSAVWRPSWELMSARTTDAPSWMNSWAVALPSPLAPPVISAIFPSILPFIAV 73
Score = 25.8 bits (50), Expect(3) = 5e-039
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +2
Query: 471 GRLDVYCNNAGVLG 512
GRLDV N+AGV+G
Sbjct: 317 GRLDVMFNSAGVVG 358
Score = 24.9 bits (48), Expect(3) = 2e-028
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2 / -2
Query: 511 PSTPALLQ*TSRRP 470
P+TPALL TS RP
Sbjct: 357 PTTPALLNMTSSRP 316
>gb|BI960547.1|BI960547 HVSMEn0024P20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024P20f, mRNA sequence
Length = 655
Score = 88.1 bits (186), Expect(3) = 2e-026
Identities = 45/89 (50%), Positives = 52/89 (58%)
Frame = -2 / -2
Query: 811 VATPKGETQLTRTPCARSSQAAFLVSPTMACLEAV*ACGPRPPSTAATLATETMLPARRG 632
VAT GE QLTRT SS+AA L +P MA LE+ * PRP T L + M P R G
Sbjct: 654 VATACGEMQLTRTRWRPSSRAAALPAPAMASLESE*GYEPRPAMTPLMLPMQRMEPERAG 475
Query: 631 AMARAACFIPSAAPSALTRSTRSNSAASK 545
AM R AC IP++ P LTR T SN S+
Sbjct: 474 AMTRVACLIPASVPRRLTRITSSNWPRSR 388
Score = 84.5 bits (178), Expect(3) = 9e-037
Identities = 37/82 (45%), Positives = 48/82 (58%)
Frame = +3 / +2
Query: 225 TPMPKRLDGKVAIVTGGARGIGEAIVRLFAKHGARXXXXXXXXXXGEALASALGPQVSFV 404
T M R++GK+A++TGGA G+G+A F + GA G A LGPQ FV
Sbjct: 74 TAMKGRMEGKIALITGGASGLGKATAHEFIQEGASVVLADINSQLGLQTAEELGPQAHFV 253
Query: 405 RCDVSVEDDVRRAVDWALSRHG 470
CDV ED+V AVD A++RHG
Sbjct: 254 HCDVVHEDNVAGAVDAAVARHG 319
Score = 82.2 bits (173), Expect(3) = 9e-037
Identities = 39/90 (43%), Positives = 46/90 (51%)
Frame = +3 / +2
Query: 543 SFDAAEFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYTASKH 722
+ D +FD V+RVN G G+KHA R MAP R + Y+ SK
Sbjct: 386 TLDLGQFDDVIRVNLRGTLAGIKHATRVMAPARSGSILCMGSISGVMAGLGSYPYSLSKL 565
Query: 723 AIVGLTKNAACELRAHGVRVNCVSPFGVAT 812
AI G K AA EL H VRVNC+SP VAT
Sbjct: 566 AIAGAGKAAARELGRHRVRVNCISPHAVAT 655
Score = 44.1 bits (90), Expect(3) = 2e-026
Identities = 25/59 (42%), Positives = 26/59 (44%)
Frame = -2 / -2
Query: 400 KLTCGPXXXXXXXXXXXXXXAITTRAPCLANSRTMASPIPRAPPVTMATFPSSLLGIGV 224
K CGP A TT AP NS +A P P APPV A FPS L I V
Sbjct: 249 KWACGPSSSAVWRPSWELMSARTTDAPSWMNSWAVALPSPLAPPVISAIFPSILPFIAV 73
Score = 25.8 bits (50), Expect(3) = 9e-037
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +2
Query: 471 GRLDVYCNNAGVLG 512
GRLDV N+AGV+G
Sbjct: 317 GRLDVMFNSAGVVG 358
Score = 24.9 bits (48), Expect(3) = 2e-026
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2 / -2
Query: 511 PSTPALLQ*TSRRP 470
P+TPALL TS RP
Sbjct: 357 PTTPALLNMTSSRP 316
>gb|BG299290.1|BG299290 HVSMEa0019D17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0019D17f, mRNA sequence
Length = 627
Score = 86.3 bits (182), Expect(2) = 2e-024
Identities = 44/93 (47%), Positives = 49/93 (52%)
Frame = -2 / -3
Query: 811 VATPKGETQLTRTPCARSSQAAFLVSPTMACLEAV*ACGPRPPSTAATLATETMLPARRG 632
V GE LTR PC SS AA VS T A L V*A +PP+ A L M P R G
Sbjct: 613 VTATSGEINLTRIPCWPSSVAAVFVSQTSARLAHV*AWXAKPPTADARLDVPMMQPCRAG 434
Query: 631 AMARAACFIPSAAPSALTRSTRSNSAASKDRML 533
M RAAC +P P+ LT STRS S+ R L
Sbjct: 433 TMTRAACLVPRKGPTRLTASTRSKSSLVLSRKL 335
Score = 85.4 bits (180), Expect(4) = 1e-034
Identities = 40/96 (41%), Positives = 47/96 (48%)
Frame = +3 / +3
Query: 525 AARSILSFDAAEFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHA 704
A S +F+RVL VN +G LG KHAAR M P R HA
Sbjct: 327 ACHSFRDSTKEDFERVLAVNLVGPFLGTKHAARVMVPARQGCIIGTSSLASAVGGLASHA 506
Query: 705 YTASKHAIVGLTKNAACELRAHGVRVNCVSPFGVAT 812
YT +K A+V LTK AA EL HG+RV +SP T
Sbjct: 507 YTCAKRALVWLTKTAATELGQHGIRVKLISPLVAVT 614
Score = 62.5 bits (130), Expect(4) = 1e-034
Identities = 26/54 (48%), Positives = 32/54 (59%)
Frame = +3 / +3
Query: 237 KRLDGKVAIVTGGARGIGEAIVRLFAKHGARXXXXXXXXXXGEALASALGPQVS 398
++LDGKVA++TGGA GIGE RLF +HGA G L + LGP S
Sbjct: 48 RKLDGKVALITGGASGIGECTARLFVQHGASVFLADIQDDLGARLCAELGPAAS 209
Score = 49.2 bits (101), Expect(2) = 2e-024
Identities = 20/32 (62%), Positives = 22/32 (68%)
Frame = -2 / -3
Query: 331 TRAPCLANSRTMASPIPRAPPVTMATFPSSLL 236
T APC NSR + SP+P APPV AT PSS L
Sbjct: 142 TLAPCCTNSRAVHSPMPLAPPVISATLPSSFL 47
Score = 31.3 bits (62), Expect(4) = 1e-034
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3 / +3
Query: 396 SFVRCDVSVEDDVRRAVDWALSRHG 470
S+VRCD + E+D+ AV A++R G
Sbjct: 210 SYVRCDFTSEEDITAAVYHAVARFG 284
Score = 24.0 bits (46), Expect(4) = 1e-034
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3 / +3
Query: 471 GRLDVYCNNAGVLGRQTRAAR 533
G+LD+ NNAG+ G + R
Sbjct: 282 GKLDIMFNNAGIGGAACHSFR 344
>gb|BF618753.2|BF618753 HVSMEc0007K17f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0007K17f, mRNA sequence
Length = 796
Score = 91.8 bits (194), Expect(2) = 1e-024
Identities = 44/93 (47%), Positives = 54/93 (58%)
Frame = -2 / -2
Query: 823 MSMGVATPKGETQLTRTPCARSSQAAFLVSPTMACLEAV*ACGPRPPSTAATLATETMLP 644
++ GV GE LTRTP S A +P+ L+ + CG PST ATLA + MLP
Sbjct: 354 ITSGVGM*LGEMALTRTPERAISPATARTTPSTVALDTLYGCGVTLPSTPATLAMQMMLP 175
Query: 643 ARRGAMARAACFIPSAAPSALTRSTRSNSAASK 545
RRGAM RAACF P++ P AL T S SA S+
Sbjct: 174 LRRGAMTRAACFTPASTPRALMAMTASKSARSR 76
Score = 87.7 bits (185), Expect(3) = 5e-032
Identities = 36/92 (39%), Positives = 51/92 (55%)
Frame = +3 / +2
Query: 549 DAAEFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYTASKHAI 728
D A+FD V+ +NA G G+KHAAR MAPRR PH Y+ SK +
Sbjct: 80 DLADFDAVMAINARGVLAGVKHAARVMAPRRSGSIICMASVAGVLGSVTPHPYSVSKATV 259
Query: 729 VGLTKNAACELRAHGVRVNCVSPFGVATPMLI 824
+G+ + A E+ GVRVN +SP + TP+++
Sbjct: 260 LGVVRAVAGEMARSGVRVNAISPNYIPTPLVM 355
Score = 66.1 bits (138), Expect(3) = 5e-032
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +3 / +2
Query: 957 LKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVTTSR 1079
++G L P DIA A L+LASDEA+Y++GHNLVVDGG T +
Sbjct: 431 MEGAVLEPDDIARAALYLASDEAKYVNGHNLVVDGGFTVGK 553
Score = 45.1 bits (92), Expect(2) = 1e-024
Identities = 23/36 (63%), Positives = 24/36 (66%)
Frame = -2 / -2
Query: 1069 VTPPSTTRLWPDIYLASSLARKSTASAMSLGLSVGP 962
V PPSTTRL P YLASS AR S A A+S G S P
Sbjct: 543 VKPPSTTRLCPLTYLASSDAR*SAALAISSGSSTAP 436
Score = 27.6 bits (54), Expect(3) = 5e-032
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3 / +2
Query: 471 GRLDVYCNNAGVLGRQTRAARSIL 542
G+LD+ NNAG++G R S L
Sbjct: 8 GKLDIMLNNAGIVGSLARPRLSDL 79
>gb|AL506124.1|AL506124 AL506124 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02B21T 5',
mRNA sequence
Length = 646
Score = 91.3 bits (193), Expect(2) = 3e-025
Identities = 44/93 (47%), Positives = 53/93 (56%)
Frame = -2 / -3
Query: 823 MSMGVATPKGETQLTRTPCARSSQAAFLVSPTMACLEAV*ACGPRPPSTAATLATETMLP 644
++ GV GE LTRTP S A +P A + + CG PST ATLA + MLP
Sbjct: 284 ITSGVGM*LGEMALTRTPERAISPATARTTPNTAAFDTLYGCGVTLPSTPATLAMQMMLP 105
Query: 643 ARRGAMARAACFIPSAAPSALTRSTRSNSAASK 545
RRGAM RAACF P++ P AL T S SA S+
Sbjct: 104 LRRGAMTRAACFTPASTPRALMAMTASKSARSR 6
Score = 90.4 bits (191), Expect(2) = 1e-031
Identities = 38/97 (39%), Positives = 53/97 (54%)
Frame = +3 / +1
Query: 549 DAAEFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYTASKHAI 728
D A+FD V+ +NA G G+KHAAR MAPRR PH Y+ SK A+
Sbjct: 10 DLADFDAVMAINARGVLAGVKHAARVMAPRRSGSIICMASVAGVLGSVTPHPYSVSKAAV 189
Query: 729 VGLTKNAACELRAHGVRVNCVSPFGVATPMLINAWRQ 839
+G+ + A E+ GVRVN +SP + TP+++ Q
Sbjct: 190 LGVVRAVAGEMARSGVRVNAISPNYIPTPLVMRILEQ 300
Score = 67.0 bits (140), Expect(2) = 1e-031
Identities = 28/59 (47%), Positives = 36/59 (61%)
Frame = +3 / +1
Query: 903 PSDQEVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVTTSR 1079
P E V + ++G L P DIA A L+LASDEA+Y++GHNLVVDGG T +
Sbjct: 307 PKASAEEHRRIVEEDINEMEGAVLEPDDIARAALYLASDEAKYVNGHNLVVDGGFTVGK 483
Score = 47.3 bits (97), Expect(2) = 3e-025
Identities = 24/36 (66%), Positives = 24/36 (66%)
Frame = -2 / -3
Query: 1069 VTPPSTTRLWPDIYLASSLARKSTASAMSLGLSVGP 962
V PPSTTRL P YLASS AR S A AMS G S P
Sbjct: 473 VNPPSTTRLCPLTYLASSDAR*SAALAMSSGSSTAP 366
>gb|BG365695.2|BG365695 HVSMEi0003M08f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0003M08f, mRNA sequence
Length = 751
Score = 88.1 bits (186), Expect(2) = 3e-023
Identities = 43/90 (47%), Positives = 50/90 (55%)
Frame = -2 / -2
Query: 814 GVATPKGETQLTRTPCARSSQAAFLVSPTMACLEAV*ACGPRPPSTAATLATETMLPARR 635
GV GE LTRTP S A +P A + + CG PST ATLA + MLP RR
Sbjct: 681 GVGM*LGEMALTRTPERAISPATARTTPNAAAFDTLYGCGVTLPSTPATLAMQMMLPLRR 502
Query: 634 GAMARAACFIPSAAPSALTRSTRSNSAASK 545
GAM RA CFIP++ P AL S SA S+
Sbjct: 501 GAMTRAECFIPASTPRALMAMMASKSARSR 412
Score = 84.9 bits (179), Expect(3) = 5e-030
Identities = 35/92 (38%), Positives = 50/92 (54%)
Frame = +3 / +2
Query: 549 DAAEFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYTASKHAI 728
D A+FD ++ +NA G GMKH+AR MAPRR PH Y+ SK A
Sbjct: 416 DLADFDAIMAINARGVLAGMKHSARVMAPRRSGSIICMASVAGVLGSVTPHPYSVSKAAA 595
Query: 729 VGLTKNAACELRAHGVRVNCVSPFGVATPMLI 824
+G+ + A E+ GVRV +SP + TP+++
Sbjct: 596 LGVVRAVAGEMARSGVRVKAISPNYIPTPLVM 691
Score = 57.4 bits (119), Expect(3) = 5e-030
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +3 / +2
Query: 237 KRLDGKVAIVTGGARGIGEAIVRLFAKHGARXXXXXXXXXXGEALASALGPQVSFVRC 410
+RL GKVA++TGGA GIG+A+ F ++GA+ G A A+ LGP + C
Sbjct: 110 QRLAGKVAVITGGASGIGKAMAAEFVRNGAKVVLADVQDDLGRAAAAELGPNAACYAC 283
Score = 44.1 bits (90), Expect(2) = 3e-023
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = -2 / -2
Query: 388 GPXXXXXXXXXXXXXXAITTRAPCLANSRTMASPIPRAPPVTMATFPSSL 239
GP A TT AP L NS +A P+P APPV AT P++L
Sbjct: 261 GPSSAAAARPRSS*TSARTTLAPFLTNSAAIALPMPLAPPVITATLPANL 112
Score = 27.2 bits (53), Expect(3) = 5e-030
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / +2
Query: 408 CDVSVEDDVRRAVDWALSRHG 470
CDV+ E V AVD ++RHG
Sbjct: 284 CDVTDEAQVVAAVDLVVARHG 346
>gb|BG367721.1|BG367721 HVSMEi0013G05f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0013G05f, mRNA sequence
Length = 785
Score = 77.1 bits (162), Expect(3) = 7e-030
Identities = 30/87 (34%), Positives = 44/87 (50%)
Frame = +3 / -2
Query: 579 VNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYTASKHAIVGLTKNAACE 758
+N G G+KHA+R M P R P Y+ SK A++ + K+ A +
Sbjct: 622 INVRGVLAGIKHASRVMIPSRTGSILCTASATGMMGGIAPQTYSVSKSAVIVIVKSMAAQ 443
Query: 759 LRAHGVRVNCVSPFGVATPMLINAWRQ 839
L +G+RVNC+SPF V TP ++ Q
Sbjct: 442 LCQYGIRVNCISPFAVPTPFTLDQMTQ 362
Score = 69.3 bits (145), Expect(3) = 7e-030
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = +3 / -2
Query: 915 EVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVTTSRNL 1085
+ E++ +++ L TL P D+A+ ++LASD+A Y+SGHNLVVDGG+T+S+ L
Sbjct: 346 DAEQLVKMIHSFGLLGKATLEPGDVADPAVYLASDDAEYVSGHNLVVDGGLTSSKIL 176
Score = 22.6 bits (43), Expect(3) = 7e-030
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +3 / -1
Query: 408 CDVSVEDDVRRAVDWALSRH 467
C+V+ E + VD+ +S+H
Sbjct: 782 CNVTEESEASDGVDFTVSKH 723
>gb|CA022105.1|CA022105 HZ42C21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42C21
5-PRIME, mRNA sequence
Length = 530
Score = 81.7 bits (172), Expect(2) = 8e-022
Identities = 38/80 (47%), Positives = 47/80 (58%)
Frame = -2 / -3
Query: 823 MSMGVATPKGETQLTRTPCARSSQAAFLVSPTMACLEAV*ACGPRPPSTAATLATETMLP 644
++ GV GE LTRTP S A +P+ L+ + CG PST ATLA + MLP
Sbjct: 252 ITSGVGM*LGEMALTRTPERAISPATARTTPSTVALDTLYGCGVTLPSTPATLAMQMMLP 73
Query: 643 ARRGAMARAACFIPSAAPSA 584
RRGAM RAACF P++ P A
Sbjct: 72 LRRGAMTRAACFTPASTPRA 13
Score = 74.8 bits (157), Expect(2) = 8e-027
Identities = 32/86 (37%), Positives = 44/86 (51%)
Frame = +3 / +2
Query: 582 NALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYTASKHAIVGLTKNAACEL 761
NA G G+KHAAR MAPRR PH Y+ SK ++G+ + A E+
Sbjct: 11 NARGVLAGVKHAARVMAPRRSGSIICMASVAGVLGSVTPHPYSVSKATVLGVVRAVAGEM 190
Query: 762 RAHGVRVNCVSPFGVATPMLINAWRQ 839
GVRVN +SP + TP+++ Q
Sbjct: 191 ARSGVRVNAISPNYIPTPLVMRILEQ 268
Score = 66.1 bits (138), Expect(2) = 8e-027
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +3 / +2
Query: 957 LKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVTTSR 1079
++G L P DIA A L+LASDEA+Y++GHNLVVDGG T +
Sbjct: 329 MEGAVLEPDDIARAALYLASDEAKYVNGHNLVVDGGFTVGK 451
Score = 45.1 bits (92), Expect(2) = 8e-022
Identities = 23/36 (63%), Positives = 24/36 (66%)
Frame = -2 / -3
Query: 1069 VTPPSTTRLWPDIYLASSLARKSTASAMSLGLSVGP 962
V PPSTTRL P YLASS AR S A A+S G S P
Sbjct: 441 VKPPSTTRLCPLTYLASSDAR*SAALAISSGSSTAP 334
>gb|BM374572.2|BM374572 EBpi03_SQ003_P23_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_P23 5', mRNA sequence
Length = 463
Score = 65.2 bits (136), Expect(3) = 2e-026
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +3 / +2
Query: 957 LKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVT 1070
++G L P DIA A L+LASDEA+Y++GHNLVVDGG T
Sbjct: 344 MEGAVLEPDDIARAALYLASDEAKYVNGHNLVVDGGFT 457
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 27/72 (37%), Positives = 36/72 (50%)
Frame = +3 / +3
Query: 558 EFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYTASKHAIVGL 737
+FD V+ +NA G G+KHAAR MAPRR PH Y+ SK ++G+
Sbjct: 3 DFDAVMAINARGVLAGVKHAARVMAPRRSGSIICMASVAGVLGSVTPHPYSVSKATVLGV 182
Query: 738 TKNAACELRAHG 773
+ A RA G
Sbjct: 183 VRAVAGRWRAPG 218
Score = 29.0 bits (57), Expect(3) = 2e-026
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3 / +2
Query: 756 ELRAHGVRVNCVSPFGVATPMLINAWRQ 839
E+ GVRVN +SP + TP+++ Q
Sbjct: 200 EMARSGVRVNAISPNYIPTPLVMRILEQ 283
>gb|BQ762559.1|BQ762559 EBro02_SQ004_D11_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_D11 5', mRNA sequence
Length = 399
Score = 109 bits (232), Expect(2) = 2e-026
Identities = 48/76 (63%), Positives = 53/76 (69%)
Frame = +3 / +3
Query: 189 HGWDGNGATAVPTPMPKRLDGKVAIVTGGARGIGEAIVRLFAKHGARXXXXXXXXXXGEA 368
H G A+ PTPM KRLDGKVAIVTGGARGIGEAIVRLF KHGA+ G+A
Sbjct: 171 HHAHGWDASGAPTPMHKRLDGKVAIVTGGARGIGEAIVRLFVKHGAKVLIADIDDAAGDA 350
Query: 369 LASALGPQVSFVRCDV 416
LA++LGP V RCDV
Sbjct: 351 LAASLGPHVGSERCDV 398
Score = 30.4 bits (60), Expect(2) = 2e-026
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +3 / +3
Query: 159 AHQPVMSPSHH 191
AHQP MSPSHH
Sbjct: 144 AHQPAMSPSHH 176
>gb|BM372991.2|BM372991 EBma04_SQ002_K15_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_K15 5', mRNA sequence
Length = 615
Score = 55.6 bits (115), Expect(4) = 4e-025
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = +3 / +2
Query: 192 GWDGNGATAVPTPMPKRLDGKVAIVTGGARGIGEAIVRLFAKHGARXXXXXXXXXXGEAL 371
G+ G+ + +RL GKVA++TGGA GIG+A F ++GA+ G A+
Sbjct: 98 GFVGHCGYSTVITSSQRLAGKVAVITGGASGIGKATAAEFVRNGAKVILADVQDDLGRAV 277
Query: 372 ASALGPQVS 398
A+ LGP +
Sbjct: 278 AAELGPNAA 304
Score = 52.8 bits (109), Expect(4) = 4e-025
Identities = 22/54 (40%), Positives = 27/54 (50%)
Frame = +3 / +2
Query: 549 DAAEFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYT 710
D A+FD V+ +NA G G+KHAAR MAPRR PH Y+
Sbjct: 449 DLADFDAVMAINARGVLAGVKHAARVMAPRRSGSIICMVSVAGVLGIVTPHPYS 610
Score = 33.6 bits (67), Expect(4) = 4e-025
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3 / +2
Query: 399 FVRCDVSVEDDVRRAVDWALSRHG 470
+ RCDV+ E V AVD A++RHG
Sbjct: 308 YARCDVTDEAQVAAAVDLAVARHG 379
Score = 28.1 bits (55), Expect(4) = 4e-025
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3 / +2
Query: 471 GRLDVYCNNAGVLGRQTRAARSIL 542
G+LD+ NNAG++G R S L
Sbjct: 377 GKLDIMLNNAGIMGSLARPRLSDL 448
>gb|CA020535.1|CA020535 HZ36J17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36J17
5-PRIME, mRNA sequence
Length = 556
Score = 90.4 bits (191), Expect(3) = 7e-025
Identities = 38/97 (39%), Positives = 53/97 (54%)
Frame = +3 / +1
Query: 549 DAAEFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYTASKHAI 728
D A+FD V+ +NA G G+KHAAR MAPRR PH Y+ SK A+
Sbjct: 235 DLADFDAVMAINARGVLAGVKHAARVMAPRRSGSIICMASVAGVLGSVTPHPYSVSKAAV 414
Query: 729 VGLTKNAACELRAHGVRVNCVSPFGVATPMLINAWRQ 839
+G+ + A E+ GVRVN +SP + TP+++ Q
Sbjct: 415 LGVVRAVAGEMARSGVRVNAISPNYIPTPLVMRILEQ 525
Score = 33.6 bits (67), Expect(3) = 7e-025
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3 / +1
Query: 399 FVRCDVSVEDDVRRAVDWALSRHG 470
+ RCDV+ E V AVD A++RHG
Sbjct: 94 YARCDVTDEAQVAAAVDLAVARHG 165
Score = 28.1 bits (55), Expect(3) = 7e-025
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3 / +1
Query: 471 GRLDVYCNNAGVLGRQTRAARSIL 542
G+LD+ NNAG++G R S L
Sbjct: 163 GKLDIMLNNAGIMGSLARPRLSDL 234
>gb|BU997747.1|BU997747 HI08O09r HI Hordeum vulgare subsp. vulgare cDNA clone HI08O09
5-PRIME, mRNA sequence
Length = 622
Score = 54.2 bits (112), Expect(4) = 7e-025
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +3 / +3
Query: 237 KRLDGKVAIVTGGARGIGEAIVRLFAKHGARXXXXXXXXXXGEALASALGPQVS 398
+RL GKVA++TGGA GIG+A F ++GA+ G A A+ LGP +
Sbjct: 153 QRLAGKVAVITGGASGIGKATAAEFVRNGAKVVLADVQDDLGHAAAAELGPNAA 314
Score = 53.8 bits (111), Expect(4) = 7e-025
Identities = 22/54 (40%), Positives = 27/54 (50%)
Frame = +3 / +3
Query: 549 DAAEFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYT 710
D A+FD V+ +NA G G+KHAAR MAPRR PH Y+
Sbjct: 459 DLADFDAVMAINARGVLAGVKHAARVMAPRRSGSIICMASVAGVLGSVTPHPYS 620
Score = 33.6 bits (67), Expect(4) = 7e-025
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3 / +3
Query: 399 FVRCDVSVEDDVRRAVDWALSRHG 470
+ RCDV+ E V AVD A++RHG
Sbjct: 318 YARCDVTDEAQVAAAVDLAVARHG 389
Score = 27.6 bits (54), Expect(4) = 7e-025
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3 / +3
Query: 471 GRLDVYCNNAGVLGRQTRAARSIL 542
G+LD+ NNAG++G R S L
Sbjct: 387 GKLDIMLNNAGIVGSLARPRLSDL 458
>gb|BU999748.1|BU999748 HI15K05r HI Hordeum vulgare subsp. vulgare cDNA clone HI15K05
5-PRIME, mRNA sequence
Length = 569
Score = 54.2 bits (112), Expect(4) = 2e-023
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +3 / +3
Query: 237 KRLDGKVAIVTGGARGIGEAIVRLFAKHGARXXXXXXXXXXGEALASALGPQVS 398
+RL GKVA++TGGA GIG+A F ++GA+ G A A+ LGP +
Sbjct: 153 QRLAGKVAVITGGASGIGKATAAEFVRNGAKVVLADVQDDLGHAAAAELGPNAA 314
Score = 49.2 bits (101), Expect(4) = 2e-023
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +3 / +3
Query: 549 DAAEFDRVLRVNALGAALGMKHAARAMAPRR 641
D A+FD V+ +NA G G+KHAAR MAPRR
Sbjct: 459 DLADFDAVMAINARGVLAGVKHAARVMAPRR 551
Score = 33.6 bits (67), Expect(4) = 2e-023
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3 / +3
Query: 399 FVRCDVSVEDDVRRAVDWALSRHG 470
+ RCDV+ E V AVD A++RHG
Sbjct: 318 YARCDVTDEAQVAAAVDLAVARHG 389
Score = 27.6 bits (54), Expect(4) = 2e-023
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3 / +3
Query: 471 GRLDVYCNNAGVLGRQTRAARSIL 542
G+LD+ NNAG++G R S L
Sbjct: 387 GKLDIMLNNAGIVGSLARPRLSDL 458
>gb|CA001536.1|CA001536 HS17E14u HS Hordeum vulgare subsp. vulgare cDNA clone HS17E14
3-PRIME, mRNA sequence
Length = 525
Score = 76.2 bits (160), Expect(2) = 2e-023
Identities = 32/84 (38%), Positives = 45/84 (53%)
Frame = +3 / -2
Query: 573 LRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYTASKHAIVGLTKNAA 752
+ +NA G GMKH+AR MAPRR PH Y+ SK A +G+ + A
Sbjct: 524 MAINARGVLAGMKHSARVMAPRRSGSIICMASVAGVLGSVTPHPYSVSKAAALGVVRAVA 345
Query: 753 CELRAHGVRVNCVSPFGVATPMLI 824
E+ GVRVN +SP + TP+++
Sbjct: 344 GEMARSGVRVNAISPNYIPTPLVM 273
Score = 56.1 bits (116), Expect(2) = 2e-023
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +3 / -2
Query: 957 LKGPTLRPRDIAEAVLFLASDEARYISGHNLVVD 1058
++G L P DIA L+LASDEA+Y++GHNLVVD
Sbjct: 197 MEGAVLEPDDIARVALYLASDEAKYVNGHNLVVD 96
>gb|BM374245.2|BM374245 EBpi03_SQ003_B08_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_B08 5', mRNA sequence
Length = 436
Score = 63.4 bits (132), Expect(3) = 2e-022
Identities = 27/72 (37%), Positives = 36/72 (50%)
Frame = +3 / +3
Query: 558 EFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYTASKHAIVGL 737
+FD V+ +NA G G+KHAAR MAPRR PH Y+ SK ++G+
Sbjct: 3 DFDAVMAINARGVLAGVKHAARVMAPRRSGSIICMASVAGVLGSVTPHPYSVSKATVLGV 182
Query: 738 TKNAACELRAHG 773
+ A RA G
Sbjct: 183 VRAVAGRWRAPG 218
Score = 51.5 bits (106), Expect(3) = 2e-022
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +3 / +2
Query: 957 LKGPTLRPRDIAEAVLFLASDEARYISGHNL 1049
++G L P DIA A L+LASDEA+Y++GHNL
Sbjct: 344 MEGAVLEPDDIARAALYLASDEAKYVNGHNL 436
Score = 29.0 bits (57), Expect(3) = 2e-022
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3 / +2
Query: 756 ELRAHGVRVNCVSPFGVATPMLINAWRQ 839
E+ GVRVN +SP + TP+++ Q
Sbjct: 200 EMARSGVRVNAISPNYIPTPLVMRILEQ 283
>gb|BG301015.1|BG301015 HVSMEb0019E07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019E07f, mRNA sequence
Length = 822
Score = 63.4 bits (132), Expect(3) = 8e-022
Identities = 30/84 (35%), Positives = 40/84 (47%)
Frame = +3 / +1
Query: 549 DAAEFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPHAYTASKHAI 728
D A+FD V+ +NA G G+KHAAR MAPRR P Y+ SK +
Sbjct: 478 DLADFDAVMAINARGVLAGVKHAARVMAPRRSGSIICMASVAGVLGSVTPLPYSVSKATV 657
Query: 729 VGLTKNAACELRAHGVRVNCVSPF 800
+G+ A E+ GV + PF
Sbjct: 658 LGVVHPVAGEMVLFGVEDLFLLPF 729
Score = 44.1 bits (90), Expect(3) = 8e-022
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +3 / +3
Query: 237 KRLDGKVAIVTGGARGIGEAIVRLFAKHGAR 329
+RL GKVA++TGGA GIG+A F ++GA+
Sbjct: 150 QRLAGKVAVITGGASGIGKATAAEFVRNGAK 242
Score = 34.1 bits (68), Expect(3) = 8e-022
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3 / +1
Query: 363 EALASALGPQVSFVRCDVSVEDDVRRAVDWALSRHG 470
E L + RCDV+ E V AVD A++RHG
Sbjct: 301 EXLLGGAPNAACYARCDVTDEAQVAAAVDLAVARHG 408
>gb|BQ660501.1|BQ660501 HI02N17u HI Hordeum vulgare subsp. vulgare cDNA clone HI02N17
3-PRIME, mRNA sequence
Length = 540
Score = 67.0 bits (140), Expect(2) = 2e-021
Identities = 28/59 (47%), Positives = 36/59 (61%)
Frame = +3 / -1
Query: 903 PSDQEVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVTTSR 1079
P E V + ++G L P DIA A L+LASDEA+Y++GHNLVVDGG T +
Sbjct: 318 PKASAEEHRRIVEEDINEMEGAVLEPDDIARAALYLASDEAKYVNGHNLVVDGGFTVGK 142
Score = 56.1 bits (116), Expect(2) = 2e-021
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +3 / -1
Query: 627 MAPRRXXXXXXXXXXXXXXXXXXPHAYTASKHAIVGLTKNAACELRAHGVRVNCVSPFGV 806
MAPRR PH Y+ SK A++G+ + A E+ GVRVN +SP +
Sbjct: 537 MAPRRSGSIICMASVAGVLGSVTPHPYSVSKAAVLGVVRPVAGEMARSGVRVNAISPNYI 358
Query: 807 ATPMLINAWRQ 839
TP+++ Q
Sbjct: 357 PTPLVMRILEQ 325
>gb|CA020976.1|CA020976 HZ38K15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ38K15
5-PRIME, mRNA sequence
Length = 440
Score = 50.6 bits (104), Expect(4) = 3e-021
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = +3 / +2
Query: 549 DAAEFDRVLRVNALGAALGMKHAARAMAPRRXXXXXXXXXXXXXXXXXXPH 701
D A+FD V+ +NA G G+KHAAR MAPRR PH
Sbjct: 287 DLADFDAVMAINARGVLAGVKHAARVMAPRRSGSIICMASVAGVLGSVTPH 439
Score = 44.6 bits (91), Expect(4) = 3e-021
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3 / +2
Query: 258 AIVTGGARGIGEAIVRLFAKHGARXXXXXXXXXXGEALASALGPQVS 398
A++TGGA GIG+A F ++GA+ G A+A+ LGP +
Sbjct: 2 AVITGGASGIGKATAAEFVRNGAKVILADVQDDLGRAVAAELGPNAA 142
Score = 33.6 bits (67), Expect(4) = 3e-021
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3 / +2
Query: 399 FVRCDVSVEDDVRRAVDWALSRHG 470
+ RCDV+ E V AVD A++RHG
Sbjct: 146 YARCDVTDEAQVAAAVDLAVARHG 217
Score = 28.1 bits (55), Expect(4) = 3e-021
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3 / +2
Query: 471 GRLDVYCNNAGVLGRQTRAARSIL 542
G+LD+ NNAG++G R S L
Sbjct: 215 GKLDIMLNNAGIMGSLARPRLSDL 286
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 456,945,597
Number of Sequences: 312970
Number of extensions: 8094207
Number of successful extensions: 150181
Number of sequences better than 1.0e-020: 24
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 14752141457
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)