TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9196052.2.1
(771 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG310215.2|BG310215 HVSMEc0016H22f Hordeum vulgare seedl... 148 6e-037
gb|CA028410.1|CA028410 HZ61O22r HZ Hordeum vulgare subsp. v... 148 6e-037
gb|AV915714.1|AV915714 AV915714 K. Sato unpublished cDNA li... 148 6e-037
gb|BJ463901.1|BJ463901 BJ463901 K. Sato unpublished cDNA li... 148 6e-037
gb|BQ463250.1|BQ463250 HI04I09r HI Hordeum vulgare subsp. v... 113 5e-026
gb|BQ753958.1|BQ753958 EBca01_SQ002_G05_R carpel, pre-anthe... 107 8e-023
gb|AL505896.1|AL505896 AL505896 Hordeum vulgare Barke roots... 101 4e-021
gb|AL503144.1|AL503144 AL503144 Hordeum vulgare Barke roots... 96 2e-019
gb|CA029322.1|CA029322 HZ64N20r HZ Hordeum vulgare subsp. v... 79 4e-016
gb|AW982369.2|AW982369 HVSMEg0003B10f Hordeum vulgare pre-a... 71 4e-015
gb|AV920823.1|AV920823 AV920823 K. Sato unpublished cDNA li... 54 1e-006
gb|BJ468069.1|BJ468069 BJ468069 K. Sato unpublished cDNA li... 45 5e-004
gb|BF630152.2|BF630152 HVSMEb0008C05f Hordeum vulgare seedl... 36 0.20
gb|AW982639.2|AW982639 HVSMEg0003N01f Hordeum vulgare pre-a... 36 0.20
gb|BQ764849.1|BQ764849 EBca01_SQ005_G03_R carpel, pre-anthe... 29 0.42
gb|AL510007.1|AL510007 AL510007 Hordeum vulgare Barke devel... 35 0.70
gb|BU996070.1|BU996070 HM12F10r HM Hordeum vulgare subsp. v... 35 0.70
gb|BU996811.1|BU996811 HM14N11r HM Hordeum vulgare subsp. v... 35 0.70
gb|AY946232.1| Hordeum vulgare subsp. vulgare 3' flanking s... 34 0.96
gb|BF262619.2|BF262619 HV_CEa0004H19f Hordeum vulgare seedl... 34 1.00
gb|BF263781.2|BF263781 HV_CEa0007K11f Hordeum vulgare seedl... 34 1.00
gb|BF263782.3|BF263782 HV_CEa0007K12f Hordeum vulgare seedl... 34 1.00
gb|AL505632.1|AL505632 AL505632 Hordeum vulgare Barke roots... 34 1.3
gb|AL507900.1|AL507900 AL507900 Hordeum vulgare Barke devel... 34 1.3
gb|BF267166.3|BF267166 HV_CEa0017C09f Hordeum vulgare seedl... 34 1.3
gb|AF474923.1| Hordeum vulgare subsp. vulgare chalcone isom... 33 1.8
gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, c... 33 1.8
gb|BF064555.2|BF064555 HV_CEb0015N01f Hordeum vulgare seedl... 29 2.1
gb|BE216658.2|BE216658 HV_CEb0011B20f Hordeum vulgare seedl... 32 3.4
gb|BE519506.2|BE519506 HV_CEb0016L04f Hordeum vulgare seedl... 32 3.4
gb|CA000221.1|CA000221 HS09F06u HS Hordeum vulgare subsp. v... 32 3.4
gb|CA020223.1|CA020223 HV14L01r HV Hordeum vulgare subsp. v... 26 4.4
gb|AL501191.1|AL501191 AL501191 Hordeum vulgare Barke roots... 32 4.7
gb|AL503769.1|AL503769 AL503769 Hordeum vulgare Barke roots... 32 4.7
gb|BI960261.1|BI960261 HVSMEn0024A02f Hordeum vulgare rachi... 32 4.7
gb|BE194744.3|BE194744 HVSMEh0086L18f Hordeum vulgare 5-45 ... 32 4.7
gb|BM815931.1|BM815931 HC107A05_SK.ab1 HC Hordeum vulgare s... 32 4.7
gb|BJ472663.1|BJ472663 BJ472663 K. Sato unpublished cDNA li... 32 4.7
gb|BJ476613.1|BJ476613 BJ476613 K. Sato unpublished cDNA li... 32 4.7
gb|BQ467410.1|BQ467410 HS03K17r HS Hordeum vulgare subsp. v... 32 4.7
gb|BM370913.2|BM370913 EBro04_SQ002_M19_R root, 3 week, sal... 32 4.7
gb|BQ763158.1|BQ763158 EBro02_SQ007_L08_R root, 3 week, hyd... 32 4.7
gb|BU998267.1|BU998267 HI10I06r HI Hordeum vulgare subsp. v... 32 4.7
gb|CA008342.1|CA008342 HU10K14r HU Hordeum vulgare subsp. v... 32 4.7
gb|CA024021.1|CA024021 HZ48C21r HZ Hordeum vulgare subsp. v... 32 4.7
gb|CA032515.1|CA032515 HX13F14r HX Hordeum vulgare subsp. v... 26 4.8
gb|CA010255.1|CA010255 HT11C01u HT Hordeum vulgare subsp. v... 32 4.9
gb|CA014357.1|CA014357 HT11C01r HT Hordeum vulgare subsp. v... 32 4.9
gb|CA019655.1|CA019655 HV12K24r HV Hordeum vulgare subsp. v... 32 4.9
gb|CA023638.1|CA023638 HZ46O14r HZ Hordeum vulgare subsp. v... 32 4.9
gb|CA032029.1|CA032029 HX11M21r HX Hordeum vulgare subsp. v... 32 4.9
gb|CA032828.1|CA032828 HX14F04r HX Hordeum vulgare subsp. v... 32 4.9
gb|CB876235.1|CB876235 HX10L01w HX Hordeum vulgare subsp. v... 32 4.9
gb|CB877828.1|CB877828 HP06F09T HP Hordeum vulgare subsp. v... 26 5.0
gb|AL501645.1|AL501645 AL501645 Hordeum vulgare Barke roots... 31 6.5
gb|AL507251.1|AL507251 AL507251 Hordeum vulgare Barke devel... 31 6.5
gb|BF256077.2|BF256077 HVSMEf0008K18f Hordeum vulgare seedl... 31 6.5
gb|BF262268.2|BF262268 HV_CEa0003E20f Hordeum vulgare seedl... 31 6.5
gb|BF253998.3|BF253998 HVSMEf0002L10f Hordeum vulgare seedl... 31 6.5
gb|BM375278.2|BM375278 EBem06_SQ002_N21_R embryo, 21 DPA, n... 31 6.5
gb|BQ764269.1|BQ764269 EBan01_SQ005_J07_R anther, yellow st... 31 6.5
gb|BU994838.1|BU994838 HM08F21r HM Hordeum vulgare subsp. v... 31 6.5
gb|CB881455.1|CB881455 HM09N24w HM Hordeum vulgare subsp. v... 31 6.5
gb|BF256265.3|BF256265 HVSMEf0009K22f Hordeum vulgare seedl... 29 6.7
gb|BE411291.1|BE411291 ISC004.A09F990519 ITEC ISC Barley Le... 31 8.9
gb|AL506395.1|AL506395 AL506395 Hordeum vulgare Barke devel... 31 8.9
gb|BF621923.2|BF621923 HVSMEa0001E19f Hordeum vulgare seedl... 31 8.9
gb|BF624580.2|BF624580 HVSMEa0017D11f Hordeum vulgare seedl... 31 8.9
gb|BI948659.1|BI948659 HVSMEl0010G17f Hordeum vulgare spike... 31 8.9
gb|BI950211.1|BI950211 HVSMEl0019J07f Hordeum vulgare spike... 31 8.9
gb|BI952377.1|BI952377 HVSMEm0006C10f Hordeum vulgare green... 31 8.9
gb|BI952906.1|BI952906 HVSMEm0008F05f Hordeum vulgare green... 31 8.9
gb|BI955331.1|BI955331 HVSMEm0022J11f Hordeum vulgare green... 31 8.9
gb|BI955785.1|BI955785 HVSMEm0024I02f Hordeum vulgare green... 31 8.9
gb|BF065305.1|BF065305 HV_CEb0012B06f Hordeum vulgare seedl... 31 8.9
gb|BF267617.2|BF267617 HV_CEa0018G21f Hordeum vulgare seedl... 31 8.9
gb|BE215856.2|BE215856 HV_CEb0008K19f Hordeum vulgare seedl... 31 8.9
gb|BE216068.2|BE216068 HV_CEb0009E22f Hordeum vulgare seedl... 31 8.9
gb|BM374693.1|BM374693 EBma05_SQ002_H21_R maternal, 12 DPA,... 31 8.9
gb|AJ461308.1|AJ461308 AJ461308 S00002 Hordeum vulgare subs... 31 8.9
gb|BJ466665.1|BJ466665 BJ466665 K. Sato unpublished cDNA li... 31 8.9
gb|BQ460548.1|BQ460548 HA09C20r HA Hordeum vulgare subsp. v... 31 8.9
gb|BQ460717.1|BQ460717 HA06C03r HA Hordeum vulgare subsp. v... 31 8.9
gb|BM099565.2|BM099565 EBes01_SQ003_J22_R embryo sac, 4-6 D... 31 8.9
gb|BM373693.2|BM373693 EBma03_SQ002_F22_R maternal, 8 DPA, ... 31 8.9
gb|BM373725.2|BM373725 EBma03_SQ002_H22_R maternal, 8 DPA, ... 31 8.9
gb|BM372722.2|BM372722 EBpi05_SQ003_M02_R pistil, 8 DPA, no... 31 8.9
gb|BI776631.2|BI776631 EBpi07_SQ001_D10_R pistil, 12 DPA, n... 31 8.9
gb|BI778220.2|BI778220 EBro07_SQ002_J04_R root, 3 week, red... 31 8.9
gb|BQ753357.1|BQ753357 EBan01_SQ004_A16_R anther, yellow st... 31 8.9
gb|BQ767097.1|BQ767097 EBro08_SQ007_P20_R root, 3 week, dro... 31 8.9
gb|BQ768681.1|BQ768681 EBro08_SQ012_K07_R root, 3 week, dro... 31 8.9
gb|BU976356.1|BU976356 HA03J07r HA Hordeum vulgare subsp. v... 31 8.9
gb|BU980356.1|BU980356 HA20H12r HA Hordeum vulgare subsp. v... 31 8.9
gb|BU982392.1|BU982392 HA26G15r HA Hordeum vulgare subsp. v... 31 8.9
gb|BU983128.1|BU983128 HA28K07r HA Hordeum vulgare subsp. v... 31 8.9
gb|CA026536.1|CA026536 HZ56D04r HZ Hordeum vulgare subsp. v... 31 8.9
gb|CA030229.1|CA030229 HX06H09r HX Hordeum vulgare subsp. v... 31 8.9
gb|CB874835.1|CB874835 HX06H09w HX Hordeum vulgare subsp. v... 31 8.9
gb|AF108008.1|AF108008 Hordeum vulgare HV1LRR1 (HV1LRR1) ge... 31 8.9
gb|BF265853.2|BF265853 HV_CEa0013I04f Hordeum vulgare seedl... 26 8.9
>gb|BG310215.2|BG310215 HVSMEc0016H22f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016H22f, mRNA sequence
Length = 845
Score = 148 bits (318), Expect(2) = 6e-037
Identities = 63/72 (87%), Positives = 70/72 (97%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
INELIS+LQ+LLP++RRRG SQASTTKLLKETCSYIKSLHREVDDLSDRLSDLM++MDHN
Sbjct: 253 INELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMSTMDHN 432
Query: 534 SPGAEIIRSLLR 499
S GAEIIRS+LR
Sbjct: 433 SAGAEIIRSILR 468
Score = 56.5 bits (117), Expect = 2e-007
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = -3 / +3
Query: 649 GVDDEAAQGDLQLHQEPAPGGGRSE 575
GVDDEAAQGD+QLHQEP PGGGR +
Sbjct: 318 GVDDEAAQGDVQLHQEPPPGGGRPQ 392
Score = 49.2 bits (101), Expect(3) = 3e-012
Identities = 24/50 (48%), Positives = 25/50 (50%)
Frame = +2 / -1
Query: 620 VSLSSFVVDAWLPPRRRALGXXXXXXXXXXXXXXXXTVDARDLRLDIVLV 769
VSLSSFVVDAWL PRRR LG DL LDIV +
Sbjct: 347 VSLSSFVVDAWLEPRRRELGSRDWSLEMSSLISSSEMAPRDDLLLDIVFL 198
Score = 36.3 bits (73), Expect(3) = 3e-012
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1 / -3
Query: 559 VRQAVAQIVHLPVQALDV 612
VRQ VA++VHLPV+ALDV
Sbjct: 408 VRQPVAEVVHLPVEALDV 355
Score = 25.8 bits (50), Expect(2) = 6e-037
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3 / +3
Query: 766 KDDVEPEVPRVDGLGGGDQRAYLE 695
+DDVE +V L GDQRA+L+
Sbjct: 201 EDDVEQKVVARRHLRRGDQRAHLQ 272
Score = 22.6 bits (43), Expect(3) = 3e-012
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -1
Query: 515 MISAPGLLW 541
MISAP LLW
Sbjct: 452 MISAPALLW 426
>gb|CA028410.1|CA028410 HZ61O22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61O22
5-PRIME, mRNA sequence
Length = 616
Score = 148 bits (318), Expect(2) = 6e-037
Identities = 63/72 (87%), Positives = 70/72 (97%)
Frame = -1 / +2
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
INELIS+LQ+LLP++RRRG SQASTTKLLKETCSYIKSLHREVDDLSDRLSDLM++MDHN
Sbjct: 260 INELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMSTMDHN 439
Query: 534 SPGAEIIRSLLR 499
S GAEIIRS+LR
Sbjct: 440 SAGAEIIRSILR 475
Score = 56.5 bits (117), Expect = 2e-007
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = -3 / +1
Query: 649 GVDDEAAQGDLQLHQEPAPGGGRSE 575
GVDDEAAQGD+QLHQEP PGGGR +
Sbjct: 325 GVDDEAAQGDVQLHQEPPPGGGRPQ 399
Score = 49.2 bits (101), Expect(3) = 3e-012
Identities = 24/50 (48%), Positives = 25/50 (50%)
Frame = +2 / -2
Query: 620 VSLSSFVVDAWLPPRRRALGXXXXXXXXXXXXXXXXTVDARDLRLDIVLV 769
VSLSSFVVDAWL PRRR LG DL LDIV +
Sbjct: 354 VSLSSFVVDAWLEPRRRELGSRDWSLEMSSLISSSEMAPRDDLLLDIVFL 205
Score = 36.3 bits (73), Expect(3) = 3e-012
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1 / -1
Query: 559 VRQAVAQIVHLPVQALDV 612
VRQ VA++VHLPV+ALDV
Sbjct: 415 VRQPVAEVVHLPVEALDV 362
Score = 25.8 bits (50), Expect(2) = 6e-037
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3 / +1
Query: 766 KDDVEPEVPRVDGLGGGDQRAYLE 695
+DDVE +V L GDQRA+L+
Sbjct: 208 EDDVEQKVVARRHLRRGDQRAHLQ 279
Score = 22.6 bits (43), Expect(3) = 3e-012
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -2
Query: 515 MISAPGLLW 541
MISAP LLW
Sbjct: 459 MISAPALLW 433
>gb|AV915714.1|AV915714 AV915714 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15l14 5', mRNA sequence
Length = 603
Score = 148 bits (318), Expect(2) = 6e-037
Identities = 63/72 (87%), Positives = 70/72 (97%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
INELIS+LQ+LLP++RRRG SQASTTKLLKETCSYIKSLHREVDDLSDRLSDLM++MDHN
Sbjct: 298 INELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMSTMDHN 477
Query: 534 SPGAEIIRSLLR 499
S GAEIIRS+LR
Sbjct: 478 SAGAEIIRSILR 513
Score = 56.5 bits (117), Expect = 2e-007
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = -3 / +3
Query: 649 GVDDEAAQGDLQLHQEPAPGGGRSE 575
GVDDEAAQGD+QLHQEP PGGGR +
Sbjct: 363 GVDDEAAQGDVQLHQEPPPGGGRPQ 437
Score = 49.2 bits (101), Expect(3) = 4e-011
Identities = 24/50 (48%), Positives = 25/50 (50%)
Frame = +2 / -2
Query: 620 VSLSSFVVDAWLPPRRRALGXXXXXXXXXXXXXXXXTVDARDLRLDIVLV 769
VSLSSFVVDAWL PRRR LG DL LDIV +
Sbjct: 392 VSLSSFVVDAWLEPRRRELGSRDWSLEMSSLISSSEMAPRDDLLLDIVFL 243
Score = 32.2 bits (64), Expect(3) = 4e-011
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1 / -1
Query: 565 QAVAQIVHLPVQALDV 612
Q VA++VHLPV+ALDV
Sbjct: 447 QPVAEVVHLPVEALDV 400
Score = 25.8 bits (50), Expect(2) = 6e-037
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3 / +3
Query: 766 KDDVEPEVPRVDGLGGGDQRAYLE 695
+DDVE +V L GDQRA+L+
Sbjct: 246 EDDVEQKVVARRHLRRGDQRAHLQ 317
Score = 22.6 bits (43), Expect(3) = 4e-011
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -2
Query: 515 MISAPGLLW 541
MISAP LLW
Sbjct: 497 MISAPALLW 471
>gb|BJ463901.1|BJ463901 BJ463901 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30p15 5', mRNA sequence
Length = 578
Score = 148 bits (318), Expect(2) = 6e-037
Identities = 63/72 (87%), Positives = 70/72 (97%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
INELIS+LQ+LLP++RRRG SQASTTKLLKETCSYIKSLHREVDDLSDRLSDLM++MDHN
Sbjct: 274 INELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMSTMDHN 453
Query: 534 SPGAEIIRSLLR 499
S GAEIIRS+LR
Sbjct: 454 SAGAEIIRSILR 489
Score = 56.5 bits (117), Expect = 2e-007
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = -3 / +3
Query: 649 GVDDEAAQGDLQLHQEPAPGGGRSE 575
GVDDEAAQGD+QLHQEP PGGGR +
Sbjct: 339 GVDDEAAQGDVQLHQEPPPGGGRPQ 413
Score = 49.2 bits (101), Expect(3) = 4e-011
Identities = 24/50 (48%), Positives = 25/50 (50%)
Frame = +2 / -1
Query: 620 VSLSSFVVDAWLPPRRRALGXXXXXXXXXXXXXXXXTVDARDLRLDIVLV 769
VSLSSFVVDAWL PRRR LG DL LDIV +
Sbjct: 368 VSLSSFVVDAWLEPRRRELGSRDWSLEMSSLISSSEMAPRDDLLLDIVFL 219
Score = 32.2 bits (64), Expect(3) = 4e-011
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1 / -3
Query: 565 QAVAQIVHLPVQALDV 612
Q VA++VHLPV+ALDV
Sbjct: 423 QPVAEVVHLPVEALDV 376
Score = 25.8 bits (50), Expect(2) = 6e-037
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3 / +3
Query: 766 KDDVEPEVPRVDGLGGGDQRAYLE 695
+DDVE +V L GDQRA+L+
Sbjct: 222 EDDVEQKVVARRHLRRGDQRAHLQ 293
Score = 22.6 bits (43), Expect(3) = 4e-011
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -1
Query: 515 MISAPGLLW 541
MISAP LLW
Sbjct: 473 MISAPALLW 447
>gb|BQ463250.1|BQ463250 HI04I09r HI Hordeum vulgare subsp. vulgare cDNA clone HI04I09
5-PRIME, mRNA sequence
Length = 596
Score = 113 bits (241), Expect(2) = 5e-026
Identities = 52/73 (71%), Positives = 58/73 (79%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I+ L + L T SQASTTK+LKETCSYIKSLHREVDDLSDRLSDLM++MD+N
Sbjct: 163 ISRLQTLLPTTRRRGSSSSSSQASTTKMLKETCSYIKSLHREVDDLSDRLSDLMSTMDNN 342
Query: 534 SPGAEIIRSLLR* 496
SP AEIIRSLLR*
Sbjct: 343 SPAAEIIRSLLR* 381
Score = 53.8 bits (111), Expect(2) = 1e-014
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -3 / +3
Query: 649 GVDDEAAQGDLQLHQEPAPGGGRSE 575
GVDDE AQGD+QLHQEPA GGGR E
Sbjct: 228 GVDDENAQGDVQLHQEPAQGGGRPE 302
Score = 45.5 bits (93), Expect(2) = 1e-014
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQAST 640
INELISRLQTLLP+ RRRG S +S+
Sbjct: 151 INELISRLQTLLPTTRRRGSSSSSS 225
Score = 36.8 bits (74), Expect(2) = 2e-004
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1 / -3
Query: 559 VRQAVAQIVHLPVQALDV 612
V +AVAQ+VHLPVQALDV
Sbjct: 318 VGEAVAQVVHLPVQALDV 265
Score = 27.2 bits (53), Expect(2) = 2e-004
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / -1
Query: 620 VSLSSFVVDAWL 655
VSLS FVVDAWL
Sbjct: 257 VSLSIFVVDAWL 222
Score = 24.4 bits (47), Expect(2) = 5e-026
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -3 / +3
Query: 727 LGGGDQRAYLE 695
+GGGDQRA+L+
Sbjct: 138 VGGGDQRAHLQ 170
>gb|BQ753958.1|BQ753958 EBca01_SQ002_G05_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_G05 5', mRNA sequence
Length = 673
Score = 107 bits (228), Expect = 8e-023
Identities = 46/51 (90%), Positives = 50/51 (98%)
Frame = -1 / +1
Query: 648 ASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLLR* 496
ASTTK+LKETCSYIKSLHREVDDLSDRLSDLM++MD+NSP AEIIRSLLR*
Sbjct: 1 ASTTKMLKETCSYIKSLHREVDDLSDRLSDLMSTMDNNSPAAEIIRSLLR* 153
Score = 51.0 bits (105), Expect = 8e-006
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -3 / +3
Query: 646 VDDEAAQGDLQLHQEPAPGGGRSE 575
VDDE AQGD+QLHQEPA GGGR E
Sbjct: 3 VDDENAQGDVQLHQEPAQGGGRPE 74
Score = 36.8 bits (74), Expect = 0.14
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1 / -2
Query: 559 VRQAVAQIVHLPVQALDV 612
V +AVAQ+VHLPVQALDV
Sbjct: 90 VGEAVAQVVHLPVQALDV 37
>gb|AL505896.1|AL505896 AL505896 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09N12V 5', mRNA sequence
Length = 469
Score = 101 bits (216), Expect = 4e-021
Identities = 43/75 (57%), Positives = 61/75 (81%)
Frame = -1 / +3
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I++L+S+LQ LLP AR RG + ++++L+ETC+YI+SLHREVDDLS+RLS+L+A+ D +
Sbjct: 225 ISDLVSKLQDLLPEARLRGNDRVPSSRVLQETCTYIRSLHREVDDLSERLSELLATSDMS 404
Query: 534 SPGAEIIRSLLR*PK 490
S A IIRSLL * +
Sbjct: 405 SAQAAIIRSLLM*SR 449
Score = 36.8 bits (74), Expect = 0.15
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3 / +2
Query: 637 EAAQGDLQLHQEPAPGGGRSE 575
+ A GD+ LHQE APGGGR E
Sbjct: 302 KGAAGDVHLHQELAPGGGRPE 364
Score = 33.1 bits (66), Expect = 1.8
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1 / -3
Query: 559 VRQAVAQIVHLPVQALDV 612
+RQ +AQ+VHLPVQA DV
Sbjct: 380 LRQPLAQVVHLPVQAPDV 327
>gb|AL503144.1|AL503144 AL503144 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09N12u 3', mRNA sequence
Length = 560
Score = 95.9 bits (203), Expect = 2e-019
Identities = 43/78 (55%), Positives = 58/78 (74%)
Frame = -1 / -2
Query: 696 RLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEI 517
+LQ LLP AR RG + ++++L+ETC+YI+SLHREVDDLS+RLS+L+A+ D +S A I
Sbjct: 502 KLQDLLPEARLRGNDRVPSSRVLQETCTYIRSLHREVDDLSERLSELLATSDMSSAQAAI 323
Query: 516 IRSLLR*PKSVRPAGRPR 463
IRSLL * + A PR
Sbjct: 322 IRSLLM*SRLPCSAQAPR 269
Score = 36.8 bits (74), Expect = 0.15
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3 / -1
Query: 637 EAAQGDLQLHQEPAPGGGRSE 575
+ A GD+ LHQE APGGGR E
Sbjct: 443 KGAAGDVHLHQELAPGGGRPE 381
Score = 33.1 bits (66), Expect = 1.8
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1 / +2
Query: 559 VRQAVAQIVHLPVQALDV 612
+RQ +AQ+VHLPVQA DV
Sbjct: 365 LRQPLAQVVHLPVQAPDV 418
>gb|CA029322.1|CA029322 HZ64N20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64N20
5-PRIME, mRNA sequence
Length = 365
Score = 78.5 bits (165), Expect(2) = 4e-016
Identities = 33/38 (86%), Positives = 37/38 (97%)
Frame = -1 / +2
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKS 601
INELIS+LQ+LLP++RRRG SQASTTKLLKETCSYIKS
Sbjct: 251 INELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKS 364
Score = 49.2 bits (101), Expect = 3e-005
Identities = 24/50 (48%), Positives = 25/50 (50%)
Frame = +2 / -3
Query: 620 VSLSSFVVDAWLPPRRRALGXXXXXXXXXXXXXXXXTVDARDLRLDIVLV 769
VSLSSFVVDAWL PRRR LG DL LDIV +
Sbjct: 345 VSLSSFVVDAWLEPRRRELGSRDWSLEMSSLISSSEMAPRDDLLLDIVFL 196
Score = 39.6 bits (80), Expect = 0.022
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -3 / +1
Query: 649 GVDDEAAQGDLQLHQE 602
GVDDEAAQGD+QLHQE
Sbjct: 316 GVDDEAAQGDVQLHQE 363
Score = 25.8 bits (50), Expect(2) = 4e-016
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3 / +1
Query: 766 KDDVEPEVPRVDGLGGGDQRAYLE 695
+DDVE +V L GDQRA+L+
Sbjct: 199 EDDVEQKVVARRHLRRGDQRAHLQ 270
>gb|AW982369.2|AW982369 HVSMEg0003B10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003B10f, mRNA sequence
Length = 563
Score = 70.7 bits (148), Expect(2) = 4e-015
Identities = 27/41 (65%), Positives = 37/41 (90%)
Frame = -1 / +2
Query: 654 SQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNS 532
+Q+S +KLLKETC YIKSLH+EVD+LSDRLS+LM+++D +
Sbjct: 431 AQSSASKLLKETCGYIKSLHQEVDELSDRLSELMSTLDETT 553
Score = 39.1 bits (79), Expect = 0.030
Identities = 13/20 (65%), Positives = 19/20 (95%)
Frame = -3 / +1
Query: 637 EAAQGDLQLHQEPAPGGGRS 578
EAA+GD+++HQEP+PGG R+
Sbjct: 448 EAAEGDVRVHQEPSPGGRRT 507
Score = 31.8 bits (63), Expect(2) = 4e-015
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRR 661
INELIS+LQ LLP + RR
Sbjct: 163 INELISKLQALLPESSRR 216
>gb|AV920823.1|AV920823 AV920823 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15l14 3', mRNA sequence
Length = 693
Score = 53.8 bits (111), Expect = 1e-006
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = -1 / -2
Query: 576 SDRLSDLMASMDHNSPGAEIIRSLLR 499
SDRLSDLM++MDHNS GAEIIRS+LR
Sbjct: 680 SDRLSDLMSTMDHNSAGAEIIRSILR 603
>gb|BJ468069.1|BJ468069 BJ468069 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30p15 3', mRNA sequence
Length = 693
Score = 45.1 bits (92), Expect = 5e-004
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -1 / -3
Query: 564 SDLMASMDHNSPGAEIIRSLLR 499
SDLM++MDHNS GAEIIRS+LR
Sbjct: 691 SDLMSTMDHNSAGAEIIRSILR 626
>gb|BF630152.2|BF630152 HVSMEb0008C05f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008C05f, mRNA sequence
Length = 507
Score = 36.3 bits (73), Expect = 0.20
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1 / +2
Query: 705 LISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMA 550
L ++L +L+P + S L E SYIK L VD+L R S + A
Sbjct: 299 LCAKLVSLIPKEHFSNPDKMSQLDRLDEAASYIKKLKERVDELQHRRSSMQA 454
>gb|AW982639.2|AW982639 HVSMEg0003N01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003N01f, mRNA sequence
Length = 1062
Score = 36.3 bits (73), Expect = 0.20
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1 / +3
Query: 495 PKSVRPAGRPRAPHICSICARAV 427
PK V GRPR PHI SIC + V
Sbjct: 858 PKQVLTRGRPRVPHILSICWKGV 926
>gb|BQ764849.1|BQ764849 EBca01_SQ005_G03_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_G03 5', mRNA sequence
Length = 724
Score = 29.0 bits (57), Expect(2) = 0.42
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1 / -2
Query: 382 IWRWREAGRRPWMERDSARADAAYMRRAW 468
IW+ GRRP M+ D+A D + W
Sbjct: 339 IWQSERCGRRPDMDGDAAAQDEGWGAVVW 253
Score = 25.8 bits (50), Expect(2) = 0.42
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2 / -2
Query: 14 VDRSIGSSTRGWSVVCQGGNNSI 82
V RS+G R W +GG+ S+
Sbjct: 684 VSRSVGGHLRRWMTT*KGGHKSV 616
>gb|AL510007.1|AL510007 AL510007 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03J07u 3',
mRNA sequence
Length = 402
Score = 34.5 bits (69), Expect = 0.70
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1 / +2
Query: 346 AWVHTHTRQCAEIWRWREAGRRPWMERDSARADAAYMRR 462
+W + R A W W +A PW S+RA A RR
Sbjct: 200 SWRPGNGRSSASAWTWPQATSWPWRPASSSRAPCASCRR 316
>gb|BU996070.1|BU996070 HM12F10r HM Hordeum vulgare subsp. vulgare cDNA clone HM12F10
5-PRIME, mRNA sequence
Length = 629
Score = 34.5 bits (69), Expect = 0.70
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1 / -1
Query: 346 AWVHTHTRQCAEIWRWREAGRRPWMERDSARADAAYMRR 462
+W + R A W W +A PW S+RA A RR
Sbjct: 524 SWRPGNGRSSASAWTWPQATSWPWRPASSSRAPCASCRR 408
>gb|BU996811.1|BU996811 HM14N11r HM Hordeum vulgare subsp. vulgare cDNA clone HM14N11
5-PRIME, mRNA sequence
Length = 632
Score = 34.5 bits (69), Expect = 0.70
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1 / -3
Query: 346 AWVHTHTRQCAEIWRWREAGRRPWMERDSARADAAYMRR 462
+W + R A W W +A PW S+RA A RR
Sbjct: 525 SWRPGNGRSSASAWTWPQATSWPWRPASSSRAPCASCRR 409
>gb|AY946232.1| Hordeum vulgare subsp. vulgare 3' flanking sequence from Ds
insertion in TNP-33
Length = 420
Score = 34.1 bits (68), Expect = 0.96
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2 / +1
Query: 326 GIFSCYMHGYTHTLGNALRSGDGER 400
GIF Y H H +A+R+GDGER
Sbjct: 91 GIFPSYFHPCPHGAEDAMRAGDGER 165
>gb|BF262619.2|BF262619 HV_CEa0004H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004H19f, mRNA sequence
Length = 862
Score = 34.1 bits (68), Expect = 1.00
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3 / +2
Query: 490 VRPSGRPATRAAYMQHLRARCLSPSMDDGRP 398
+ P+GRP+T A + L +R S +D+GRP
Sbjct: 122 IPPAGRPSTLPATVASLSSRTKSAGLDEGRP 214
>gb|BF263781.2|BF263781 HV_CEa0007K11f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007K11f, mRNA sequence
Length = 442
Score = 34.1 bits (68), Expect = 1.00
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3 / +2
Query: 490 VRPSGRPATRAAYMQHLRARCLSPSMDDGRP 398
+ P+GRP+T A + L +R S +D+GRP
Sbjct: 122 IPPAGRPSTLPATVASLSSRTKSAGLDEGRP 214
>gb|BF263782.3|BF263782 HV_CEa0007K12f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007K12f, mRNA sequence
Length = 678
Score = 34.1 bits (68), Expect = 1.00
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3 / +2
Query: 490 VRPSGRPATRAAYMQHLRARCLSPSMDDGRP 398
+ P+GRP+T A + L +R S +D+GRP
Sbjct: 122 IPPAGRPSTLPATVASLSSRTKSAGLDEGRP 214
>gb|AL505632.1|AL505632 AL505632 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09A24V 5', mRNA sequence
Length = 445
Score = 33.6 bits (67), Expect = 1.3
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1 / +3
Query: 391 WREAGRRPWMERDSARADAAYMRRAW 468
WR AGR PW AR + RR W
Sbjct: 141 WRRAGRSPWTTTAWARCSSTCSRRRW 218
>gb|AL507900.1|AL507900 AL507900 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07C23V 5',
mRNA sequence
Length = 671
Score = 33.6 bits (67), Expect = 1.3
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1 / -2
Query: 403 GRRPWMERDSARADAAYMRRAWPAGRT 483
G W AR A RRAWP GRT
Sbjct: 643 GMEAWFRAGGARPPRARSRRAWPPGRT 563
>gb|BF267166.3|BF267166 HV_CEa0017C09f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0017C09f, mRNA sequence
Length = 896
Score = 33.6 bits (67), Expect = 1.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2 / -1
Query: 203 LFPCYTPSSLAPFPFVCTLGC 141
LF C+ PSS +PFPF+ C
Sbjct: 599 LFLCFLPSSFSPFPFLFLFSC 537
>gb|AF474923.1| Hordeum vulgare subsp. vulgare chalcone isomerase (CHI) gene,
complete cds
Length = 11475
Score = 33.1 bits (66), Expect = 1.8
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = +1 / -3
Query: 301 NQP*PVVLGYIQLLYAWVHTHTRQCAEIWRWREAGRRPWMERDSARADAAYMRRA 465
N P P +GY +L T C +R R GRR RD RA RRA
Sbjct: 7399 NSPAPPAIGYCLILVVAACTWKCVCELSYR*RRRGRRRRRRRDRRRACRPTWRRA 7235
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
Length = 124050
Score = 33.1 bits (66), Expect = 1.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2 / +2
Query: 470 GHARRIYAASARALSLSIHGRRPASRHRQISAH 372
GHA+R SARA+++ GR P +R ++ H
Sbjct: 23588 GHAKRDQCLSARAITI*AEGRAPCARGLRLPGH 23686
>gb|BF064555.2|BF064555 HV_CEb0015N01f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0015N01f, mRNA sequence
Length = 586
Score = 29.0 bits (57), Expect(2) = 2.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2 / -1
Query: 479 RPAGHARRIYAASARALSLSIHGRRPASRHRQI 381
R AGHA R+ A A L+ HGR S H +
Sbjct: 148 RSAGHAPRLGARQAALHHLARHGRSICSGHLDV 50
Score = 23.1 bits (44), Expect(2) = 2.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -3 / -2
Query: 649 GVDDEAAQGDLQLHQEPAP 593
G D+E A G+ L P P
Sbjct: 399 GADEEVAMGEADLDGPPGP 343
>gb|BE216658.2|BE216658 HV_CEb0011B20f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011B20f, mRNA sequence
Length = 948
Score = 32.2 bits (64), Expect = 3.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3 / +1
Query: 345 CMGTHTHSAMR*DLAMARGRPSSMDGERQRARR 443
C G TH A++* LA+ G PS +D ++ R
Sbjct: 727 CFGPRTHRALQ*ALALMGGWPSLLDAYKEHVGR 825
>gb|BE519506.2|BE519506 HV_CEb0016L04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0016L04f, mRNA sequence
Length = 513
Score = 32.2 bits (64), Expect = 3.4
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +1 / +1
Query: 352 VHTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
VH H R R E+ RRPW R S A A+
Sbjct: 7 VHRHRRSAKRFRREWESSRRPWHSRCSCPASTAW 108
>gb|CA000221.1|CA000221 HS09F06u HS Hordeum vulgare subsp. vulgare cDNA clone HS09F06
3-PRIME, mRNA sequence
Length = 560
Score = 32.2 bits (64), Expect = 3.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1 / -2
Query: 660 GGSQASTTKLLKETCSYIKSLHREVDDL 577
GG++ T +L E YIK L R+V DL
Sbjct: 547 GGTKMDTASMLDEAIRYIKFLKRQVQDL 464
>gb|CA020223.1|CA020223 HV14L01r HV Hordeum vulgare subsp. vulgare cDNA clone HV14L01
5-PRIME, mRNA sequence
Length = 505
Score = 26.3 bits (51), Expect(2) = 4.4
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1 / +2
Query: 385 WRWREAGRRPWM 420
W WR RRPW+
Sbjct: 80 WLWRRRRRRPWV 115
Score = 24.4 bits (47), Expect(2) = 4.4
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +1 / +2
Query: 409 RPWMERDSARADAAYMRRAWP 471
RPW R R +RR WP
Sbjct: 305 RPWWWRRRRRWRLLLLRRVWP 367
>gb|AL501191.1|AL501191 AL501191 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03F22u 3', mRNA sequence
Length = 402
Score = 31.8 bits (63), Expect = 4.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / +2
Query: 385 WRWREAGRRPW 417
W WR AGRRPW
Sbjct: 122 WPWRRAGRRPW 154
>gb|AL503769.1|AL503769 AL503769 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03F22T 5', mRNA sequence
Length = 409
Score = 31.8 bits (63), Expect = 4.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / -3
Query: 385 WRWREAGRRPW 417
W WR AGRRPW
Sbjct: 296 WPWRRAGRRPW 264
>gb|BI960261.1|BI960261 HVSMEn0024A02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024A02f, mRNA sequence
Length = 683
Score = 31.8 bits (63), Expect = 4.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1 / -1
Query: 385 WRWREAGRRPWMERDSARADAAYMRRAWPA 474
W W RRPW R +AR + R P+
Sbjct: 362 WPWGRPRRRPWCRRTAARRSCRWHTRRHPS 273
>gb|BE194744.3|BE194744 HVSMEh0086L18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0086L18f, mRNA sequence
Length = 493
Score = 31.8 bits (63), Expect = 4.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / -1
Query: 385 WRWREAGRRPW 417
W WR AGRRPW
Sbjct: 316 WPWRRAGRRPW 284
>gb|BM815931.1|BM815931 HC107A05_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC107A05_SK.ab1 similar to (AF324993) AT5g17460
[Arabidopsis thaliana],hypothetical protein K3M16_30 -
Arabidopsis thaliana gi|9755770|emb|CAC01890.1|
(AL391150) hypothetical protein [Arabidopsis
thaliana],hypothetical protein [Oryza sativa],, mRNA
sequence
Length = 941
Score = 31.8 bits (63), Expect = 4.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / -3
Query: 385 WRWREAGRRPW 417
W WR AGRRPW
Sbjct: 339 WPWRRAGRRPW 307
>gb|BJ472663.1|BJ472663 BJ472663 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal35p17 5', mRNA sequence
Length = 429
Score = 31.8 bits (63), Expect = 4.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / -1
Query: 385 WRWREAGRRPW 417
W WR AGRRPW
Sbjct: 300 WPWRRAGRRPW 268
>gb|BJ476613.1|BJ476613 BJ476613 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal35p17 3', mRNA sequence
Length = 399
Score = 31.8 bits (63), Expect = 4.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / +3
Query: 385 WRWREAGRRPW 417
W WR AGRRPW
Sbjct: 99 WPWRRAGRRPW 131
>gb|BQ467410.1|BQ467410 HS03K17r HS Hordeum vulgare subsp. vulgare cDNA clone HS03K17
5-PRIME, mRNA sequence
Length = 626
Score = 31.8 bits (63), Expect = 4.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1 / -3
Query: 385 WRWREAGRRPWMERDSARADAAYMRRAWPA 474
W W RRPW R +AR + R P+
Sbjct: 333 WPWGRPRRRPWCRRTAARRSCRWHTRRHPS 244
>gb|BM370913.2|BM370913 EBro04_SQ002_M19_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_M19 5', mRNA sequence
Length = 512
Score = 31.8 bits (63), Expect = 4.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / -1
Query: 385 WRWREAGRRPW 417
W WR AGRRPW
Sbjct: 395 WPWRRAGRRPW 363
>gb|BQ763158.1|BQ763158 EBro02_SQ007_L08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_L08 5', mRNA sequence
Length = 414
Score = 31.8 bits (63), Expect = 4.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / -2
Query: 385 WRWREAGRRPW 417
W WR AGRRPW
Sbjct: 314 WPWRRAGRRPW 282
>gb|BU998267.1|BU998267 HI10I06r HI Hordeum vulgare subsp. vulgare cDNA clone HI10I06
5-PRIME, mRNA sequence
Length = 610
Score = 31.8 bits (63), Expect = 4.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1 / -1
Query: 385 WRWREAGRRPWMERDSARADAAYMRRAWPA 474
W W RRPW R +AR + R P+
Sbjct: 352 WPWGRPRRRPWCRRTAARRSCRWHTRRHPS 263
>gb|CA008342.1|CA008342 HU10K14r HU Hordeum vulgare subsp. vulgare cDNA clone HU10K14
5-PRIME, mRNA sequence
Length = 550
Score = 31.8 bits (63), Expect = 4.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1 / -1
Query: 385 WRWREAGRRPWMERDSARADAAYMRRAWPA 474
W W RRPW R +AR + R P+
Sbjct: 160 WPWGRPRRRPWCRRTAARRSCRWHTRRHPS 71
>gb|CA024021.1|CA024021 HZ48C21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48C21
5-PRIME, mRNA sequence
Length = 503
Score = 31.8 bits (63), Expect = 4.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1 / -1
Query: 385 WRWREAGRRPWMERDSARADAAYMRRAWPA 474
W W RRPW R +AR + R P+
Sbjct: 284 WPWGRPRRRPWCRRTAARRSCRWHTRRHPS 195
>gb|CA032515.1|CA032515 HX13F14r HX Hordeum vulgare subsp. vulgare cDNA clone HX13F14
5-PRIME, mRNA sequence
Length = 553
Score = 26.3 bits (51), Expect(2) = 4.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1 / +1
Query: 385 WRWREAGRRPWM 420
W WR RRPW+
Sbjct: 88 WLWRRRRRRPWV 123
Score = 24.4 bits (47), Expect(2) = 4.8
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +1 / +1
Query: 409 RPWMERDSARADAAYMRRAWP 471
RPW R R +RR WP
Sbjct: 313 RPWWWRRRRRWRLLLLRRVWP 375
>gb|CA010255.1|CA010255 HT11C01u HT Hordeum vulgare subsp. vulgare cDNA clone HT11C01
3-PRIME, mRNA sequence
Length = 433
Score = 31.8 bits (63), Expect = 4.9
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -3 / -1
Query: 478 GRPATRAAYMQHLRARCLSPSMDDGRPLAIARSQRIAECVCVPMHIAAEYTQGRQAKAGL 299
G+PA + + +A P A+ R+Q CVCV ++ +E G A A +
Sbjct: 319 GQPAGQVRHQVPCQAHRRPEVRRQEAPGAVERAQGALSCVCVDLNRGSEMLPGFGASAMI 140
Query: 298 LIG 290
+G
Sbjct: 139 AVG 131
>gb|CA014357.1|CA014357 HT11C01r HT Hordeum vulgare subsp. vulgare cDNA clone HT11C01
5-PRIME, mRNA sequence
Length = 645
Score = 31.8 bits (63), Expect = 4.9
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -3 / +1
Query: 478 GRPATRAAYMQHLRARCLSPSMDDGRPLAIARSQRIAECVCVPMHIAAEYTQGRQAKAGL 299
G+PA + + +A P A+ R+Q CVCV ++ +E G A A +
Sbjct: 343 GQPAGQVRHQVPCQAHRRPEVRRQEAPGAVERAQGALSCVCVDLNRGSEMLPGFGASAMI 522
Query: 298 LIG 290
+G
Sbjct: 523 AVG 531
>gb|CA019655.1|CA019655 HV12K24r HV Hordeum vulgare subsp. vulgare cDNA clone HV12K24
5-PRIME, mRNA sequence
Length = 303
Score = 31.8 bits (63), Expect = 4.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3 / -2
Query: 439 RARCLSPSMDDGRPLAIARSQRIAECVCV 353
RARCL + ++ R +A A ++ +A C CV
Sbjct: 101 RARCLRSAEEEDREMAAAAARYMAACSCV 15
>gb|CA023638.1|CA023638 HZ46O14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46O14
5-PRIME, mRNA sequence
Length = 487
Score = 31.8 bits (63), Expect = 4.9
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -3 / +2
Query: 478 GRPATRAAYMQHLRARCLSPSMDDGRPLAIARSQRIAECVCVPMHIAAEYTQGRQAKAGL 299
G+PA + + +A P A+ R+Q CVCV ++ +E G A A +
Sbjct: 50 GQPAGQVRHQVPCQAHRRPEVRRQEAPGAVERAQGALSCVCVDLNRGSEMLPGFGASAMI 229
Query: 298 LIG 290
+G
Sbjct: 230 AVG 238
>gb|CA032029.1|CA032029 HX11M21r HX Hordeum vulgare subsp. vulgare cDNA clone HX11M21
5-PRIME, mRNA sequence
Length = 604
Score = 31.8 bits (63), Expect = 4.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3 / -1
Query: 439 RARCLSPSMDDGRPLAIARSQRIAECVCV 353
RARCL + ++ R +A A ++ +A C CV
Sbjct: 127 RARCLRSAEEEDREMAAAAARYMAACSCV 41
>gb|CA032828.1|CA032828 HX14F04r HX Hordeum vulgare subsp. vulgare cDNA clone HX14F04
5-PRIME, mRNA sequence
Length = 633
Score = 31.8 bits (63), Expect = 4.9
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -3 / +2
Query: 478 GRPATRAAYMQHLRARCLSPSMDDGRPLAIARSQRIAECVCVPMHIAAEYTQGRQAKAGL 299
G+PA + + +A P A+ R+Q CVCV ++ +E G A A +
Sbjct: 440 GQPAGQVRHQVPCQAHRRPEVRRQEAPGAVERAQGALSCVCVDLNRGSEMLPGFGASAMI 619
Query: 298 LIG 290
+G
Sbjct: 620 AVG 628
>gb|CB876235.1|CB876235 HX10L01w HX Hordeum vulgare subsp. vulgare cDNA clone HX10L01
3-PRIME, mRNA sequence
Length = 596
Score = 31.8 bits (63), Expect = 4.9
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -3 / -3
Query: 478 GRPATRAAYMQHLRARCLSPSMDDGRPLAIARSQRIAECVCVPMHIAAEYTQGRQAKAGL 299
G+PA + + +A P A+ R+Q CVCV ++ +E G A A +
Sbjct: 315 GQPAGQVRHQVPCQAHRRPEVRRQEAPGAVERAQGALSCVCVDLNRGSEMLPGFGASAMI 136
Query: 298 LIG 290
+G
Sbjct: 135 AVG 127
>gb|CB877828.1|CB877828 HP06F09T HP Hordeum vulgare subsp. vulgare cDNA clone HP06F09
5-PRIME, mRNA sequence
Length = 463
Score = 26.3 bits (51), Expect(2) = 5.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1 / -2
Query: 403 GRRPWMERDSARADAAYMRRAWPAGR 480
G RPW R + A M R W A R
Sbjct: 132 GARPWRARMARARAARRMPRTWRAAR 55
Score = 22.6 bits (43), Expect(2) = 5.0
Identities = 6/16 (37%), Positives = 8/16 (50%)
Frame = +1 / -2
Query: 349 WVHTHTRQCAEIWRWR 396
W R+ +WRWR
Sbjct: 297 WRRRRCRRRPSVWRWR 250
>gb|AL501645.1|AL501645 AL501645 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04O06u 3', mRNA sequence
Length = 590
Score = 31.3 bits (62), Expect = 6.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1 / -3
Query: 388 RWREAGRRPWMERDSARADAAYMRRAWPA 474
RWR+ R PW R +Y R+ PA
Sbjct: 585 RWRQRARHPWTSRSFGACSISYPVRSVPA 499
>gb|AL507251.1|AL507251 AL507251 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01G14V 5',
mRNA sequence
Length = 700
Score = 31.3 bits (62), Expect = 6.5
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1 / -1
Query: 376 AEIWRWREAGRRPWMERDSARADAAYMRRAW 468
A WRWR GRR + R A RR W
Sbjct: 196 AHSWRWRRVGRRRTPRSGTFRGA*ARRRRTW 104
>gb|BF256077.2|BF256077 HVSMEf0008K18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0008K18f, mRNA sequence
Length = 812
Score = 31.3 bits (62), Expect = 6.5
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1 / -1
Query: 376 AEIWRWREAGRRPWMERDSARADAAYMRRAW 468
A WRWR GRR + R A RR W
Sbjct: 551 AHSWRWRRVGRRRTPRSGTFRGA*ARRRRTW 459
>gb|BF262268.2|BF262268 HV_CEa0003E20f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0003E20f, mRNA sequence
Length = 408
Score = 31.3 bits (62), Expect = 6.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +1
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 13 HSHRRSAKRYRREWESSRRPWHSRCSCAASTAW 111
>gb|BF253998.3|BF253998 HVSMEf0002L10f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002L10f, mRNA sequence
Length = 873
Score = 31.3 bits (62), Expect = 6.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1 / -2
Query: 406 RRPWMERDSARADAAYMRRAWPAGR 480
RRPW S+R Y R WP R
Sbjct: 116 RRPWQGHRSSRRAGRYRSRGWPRSR 42
>gb|BM375278.2|BM375278 EBem06_SQ002_N21_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_N21 5', mRNA sequence
Length = 509
Score = 31.3 bits (62), Expect = 6.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3 / -3
Query: 381 DLAMARGRPSSMDGERQRARRC 446
DL + GRPSS G R ARRC
Sbjct: 357 DLTCSSGRPSSSRGRRGPARRC 292
>gb|BQ764269.1|BQ764269 EBan01_SQ005_J07_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_J07 5', mRNA sequence
Length = 564
Score = 31.3 bits (62), Expect = 6.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3 / -3
Query: 381 DLAMARGRPSSMDGERQRARRC 446
DL + GRPSS G R ARRC
Sbjct: 325 DLTCSSGRPSSSRGRRGPARRC 260
>gb|BU994838.1|BU994838 HM08F21r HM Hordeum vulgare subsp. vulgare cDNA clone HM08F21
5-PRIME, mRNA sequence
Length = 546
Score = 31.3 bits (62), Expect = 6.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3 / -2
Query: 381 DLAMARGRPSSMDGERQRARRC 446
DL + GRPSS G R ARRC
Sbjct: 374 DLTCSSGRPSSSRGRRGPARRC 309
>gb|CB881455.1|CB881455 HM09N24w HM Hordeum vulgare subsp. vulgare cDNA clone HM09N24
3-PRIME, mRNA sequence
Length = 516
Score = 31.3 bits (62), Expect = 6.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3 / -2
Query: 381 DLAMARGRPSSMDGERQRARRC 446
DL + GRPSS G R ARRC
Sbjct: 377 DLTCSSGRPSSSRGRRGPARRC 312
>gb|BF256265.3|BF256265 HVSMEf0009K22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009K22f, mRNA sequence
Length = 792
Score = 29.0 bits (57), Expect(2) = 6.7
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1 / +1
Query: 483 RPAGRPRAPHICS 445
RP+GRPR+PH+ S
Sbjct: 190 RPSGRPRSPHLLS 228
Score = 21.7 bits (41), Expect(2) = 6.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2 / +3
Query: 410 RRPASRHRQISAH 372
RR ASR RQ+ H
Sbjct: 402 RRGASRRRQVQRH 440
>gb|BE411291.1|BE411291 ISC004.A09F990519 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC004.A09, mRNA sequence
Length = 412
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +2
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 14 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 112
>gb|AL506395.1|AL506395 AL506395 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02P17T 5',
mRNA sequence
Length = 512
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +2
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 20 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 118
>gb|BF621923.2|BF621923 HVSMEa0001E19f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001E19f, mRNA sequence
Length = 595
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +3
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 21 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 119
>gb|BF624580.2|BF624580 HVSMEa0017D11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017D11f, mRNA sequence
Length = 769
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +1
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 22 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 120
>gb|BI948659.1|BI948659 HVSMEl0010G17f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0010G17f, mRNA sequence
Length = 846
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +1
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 19 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 117
>gb|BI950211.1|BI950211 HVSMEl0019J07f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0019J07f, mRNA sequence
Length = 881
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +2
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 20 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 118
>gb|BI952377.1|BI952377 HVSMEm0006C10f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0006C10f, mRNA sequence
Length = 628
Score = 30.9 bits (61), Expect = 8.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1 / +2
Query: 349 WVHTHTRQCAEIWRWREAGRRPWMERDSA 435
W ++C WR +G++ WME SA
Sbjct: 110 WTSLQVQECPRPWRLPSSGQQ*WMEMKSA 196
>gb|BI952906.1|BI952906 HVSMEm0008F05f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0008F05f, mRNA sequence
Length = 868
Score = 30.9 bits (61), Expect = 8.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1 / +3
Query: 483 RPAGRPRAPHICSICARAV 427
R AGR AP C+IC RA+
Sbjct: 531 RKAGRVMAPRACAICTRAI 587
>gb|BI955331.1|BI955331 HVSMEm0022J11f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0022J11f, mRNA sequence
Length = 653
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +1
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 25 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 123
>gb|BI955785.1|BI955785 HVSMEm0024I02f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0024I02f, mRNA sequence
Length = 678
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +2
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 5 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 103
>gb|BF065305.1|BF065305 HV_CEb0012B06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0012B06f, mRNA sequence
Length = 575
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +1
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 58 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 156
>gb|BF267617.2|BF267617 HV_CEa0018G21f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018G21f, mRNA sequence
Length = 775
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +3
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 27 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 125
>gb|BE215856.2|BE215856 HV_CEb0008K19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008K19f, mRNA sequence
Length = 493
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +1
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 1 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 99
>gb|BE216068.2|BE216068 HV_CEb0009E22f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009E22f, mRNA sequence
Length = 567
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +1
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 28 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 126
>gb|BM374693.1|BM374693 EBma05_SQ002_H21_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_H21 5', mRNA sequence
Length = 611
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +1
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 19 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 117
>gb|AJ461308.1|AJ461308 AJ461308 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081F08F1, mRNA sequence
Length = 240
Score = 30.9 bits (61), Expect = 8.9
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +3 / +2
Query: 81 SRPHIGLXXXXXXXXXTCDEAAKSTNKWKRS*ATRSIARKQTTKSGRER 227
SRP G+ T A W+RS R+ AR TT S R R
Sbjct: 11 SRPPAGISSSTAGGFSTVRAARSWITAWRRSGTGRTRARGTTTSS*RTR 157
>gb|BJ466665.1|BJ466665 BJ466665 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33f02 3', mRNA sequence
Length = 617
Score = 30.9 bits (61), Expect = 8.9
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +3 / -1
Query: 81 SRPHIGLXXXXXXXXXTCDEAAKSTNKWKRS*ATRSIARKQTTKSGRER 227
SRP G+ T A W+RS R+ AR TT S R R
Sbjct: 392 SRPPAGISSSTAGGFSTVRAARSWITAWRRSGTGRTRARGTTTSS*RTR 246
>gb|BQ460548.1|BQ460548 HA09C20r HA Hordeum vulgare subsp. vulgare cDNA clone HA09C20
5-PRIME, mRNA sequence
Length = 445
Score = 30.9 bits (61), Expect = 8.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2 / -3
Query: 395 ERPAVVHGWRETARAQMLHICGARGRPA 478
ERP GW T+ A + +CG R PA
Sbjct: 98 ERPFTAAGWTATSDAIAVELCGGRRCPA 15
>gb|BQ460717.1|BQ460717 HA06C03r HA Hordeum vulgare subsp. vulgare cDNA clone HA06C03
5-PRIME, mRNA sequence
Length = 679
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +3
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 36 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 134
>gb|BM099565.2|BM099565 EBes01_SQ003_J22_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ003_J22 5', mRNA sequence
Length = 437
Score = 30.9 bits (61), Expect = 8.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2 / +3
Query: 422 SIHGRRPASRHRQISAHCRVCVC 354
S HG R +H+++ HC C C
Sbjct: 33 SPHGTRKPRKHKEVQVHCFPCPC 101
>gb|BM373693.2|BM373693 EBma03_SQ002_F22_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ002_F22 5', mRNA sequence
Length = 258
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +3
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 15 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 113
>gb|BM373725.2|BM373725 EBma03_SQ002_H22_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ002_H22 5', mRNA sequence
Length = 168
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +3
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 15 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 113
>gb|BM372722.2|BM372722 EBpi05_SQ003_M02_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_M02 5', mRNA sequence
Length = 438
Score = 30.9 bits (61), Expect = 8.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2 / +2
Query: 422 SIHGRRPASRHRQISAHCRVCVC 354
S HG R +H+++ HC C C
Sbjct: 41 SPHGTRKPRKHKEVQVHCFPCPC 109
>gb|BI776631.2|BI776631 EBpi07_SQ001_D10_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ001_D10 5', mRNA sequence
Length = 452
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +3
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 33 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 131
>gb|BI778220.2|BI778220 EBro07_SQ002_J04_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_J04 5', mRNA sequence
Length = 176
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +3
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 21 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 119
>gb|BQ753357.1|BQ753357 EBan01_SQ004_A16_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_A16 5', mRNA sequence
Length = 447
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1 / +1
Query: 489 SVRPAGRPRAPHICSICARAVSLHPWTT 406
S PA P AP ++C RA S + WTT
Sbjct: 85 SAAPATGPSAPLRSALCPRAPSRNSWTT 168
>gb|BQ767097.1|BQ767097 EBro08_SQ007_P20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_P20 5', mRNA sequence
Length = 504
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1 / +3
Query: 388 RWREAGRRPWMERDSARADAAYMRRAWPAG 477
RWR + R W S R+ AA R W AG
Sbjct: 249 RWRCSAARCWARSWSGRSSAAPARSGWRAG 338
>gb|BQ768681.1|BQ768681 EBro08_SQ012_K07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_K07 5', mRNA sequence
Length = 482
Score = 30.9 bits (61), Expect = 8.9
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +3 / +3
Query: 81 SRPHIGLXXXXXXXXXTCDEAAKSTNKWKRS*ATRSIARKQTTKSGRER 227
SRP G+ T A W+RS R+ AR TT S R R
Sbjct: 51 SRPPAGISSSTAGGFSTVRAARSWITAWRRSGTGRTRARGTTTSS*RTR 197
>gb|BU976356.1|BU976356 HA03J07r HA Hordeum vulgare subsp. vulgare cDNA clone HA03J07
5-PRIME, mRNA sequence
Length = 562
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +1
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 37 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 135
>gb|BU980356.1|BU980356 HA20H12r HA Hordeum vulgare subsp. vulgare cDNA clone HA20H12
5-PRIME, mRNA sequence
Length = 466
Score = 30.9 bits (61), Expect = 8.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2 / +1
Query: 422 SIHGRRPASRHRQISAHCRVCVC 354
S HG R +H+++ HC C C
Sbjct: 43 SPHGTRKPRKHKEVQVHCFPCPC 111
>gb|BU982392.1|BU982392 HA26G15r HA Hordeum vulgare subsp. vulgare cDNA clone HA26G15
5-PRIME, mRNA sequence
Length = 436
Score = 30.9 bits (61), Expect = 8.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2 / -2
Query: 395 ERPAVVHGWRETARAQMLHICGARGRPA 478
ERP GW T+ A + +CG R PA
Sbjct: 93 ERPFTAAGWTATSDAIAVELCGGRKCPA 10
>gb|BU983128.1|BU983128 HA28K07r HA Hordeum vulgare subsp. vulgare cDNA clone HA28K07
5-PRIME, mRNA sequence
Length = 583
Score = 30.9 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +2
Query: 355 HTHTRQCAEIWRWREAGRRPWMERDSARADAAY 453
H+H R R E+ RRPW R S A A+
Sbjct: 29 HSHRRSAKRYRREWESSRRPWHSRCSCPASTAW 127
>gb|CA026536.1|CA026536 HZ56D04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56D04
5-PRIME, mRNA sequence
Length = 359
Score = 30.9 bits (61), Expect = 8.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2 / -1
Query: 395 ERPAVVHGWRETARAQMLHICGARGRPA 478
ERP GW T+ A + +CG R PA
Sbjct: 92 ERPFTAAGWTATSDAIAVELCGGRKCPA 9
>gb|CA030229.1|CA030229 HX06H09r HX Hordeum vulgare subsp. vulgare cDNA clone HX06H09
5-PRIME, mRNA sequence
Length = 589
Score = 30.9 bits (61), Expect = 8.9
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3 / +3
Query: 405 PSSMDGERQRARRCCIYAARVAGRPDGRTWAS 500
PSS R R R + A AG PD R+WAS
Sbjct: 249 PSSWAAARSRMRGRGVKAPSSAGSPDLRSWAS 344
>gb|CB874835.1|CB874835 HX06H09w HX Hordeum vulgare subsp. vulgare cDNA clone HX06H09
3-PRIME, mRNA sequence
Length = 523
Score = 30.9 bits (61), Expect = 8.9
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3 / -2
Query: 405 PSSMDGERQRARRCCIYAARVAGRPDGRTWAS 500
PSS R R R + A AG PD R+WAS
Sbjct: 495 PSSWAAARSRMRGRGVKAPSSAGSPDLRSWAS 400
>gb|AF108008.1|AF108008 Hordeum vulgare HV1LRR1 (HV1LRR1) gene, complete cds
Length = 5163
Score = 30.9 bits (61), Expect = 8.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2 / -3
Query: 479 RPAGHARRIYAASARALSLSIHGRRPASRHRQI 381
R A RR+ SA S + G+RPA RH+Q+
Sbjct: 382 RRAPSGRRLPCTSAPHRSRCLFGQRPAERHQQL 284
>gb|BF265853.2|BF265853 HV_CEa0013I04f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013I04f, mRNA sequence
Length = 770
Score = 25.8 bits (50), Expect(2) = 8.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -2 / +2
Query: 443 SARALSLSIHGRRPASRHRQISAHCRVCVC 354
SAR RRPA+ + CR C C
Sbjct: 275 SARGAQAQGRRRRPAAGQNHRAPACRCCCC 364
Score = 22.1 bits (42), Expect(2) = 8.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3 / +2
Query: 481 SGRPATRAAYMQHLRARC 428
+GR TRAA L+ RC
Sbjct: 188 AGRAHTRAAGQHQLQRRC 241
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 265,937,163
Number of Sequences: 312970
Number of extensions: 3644957
Number of successful extensions: 48484
Number of sequences better than 10.0: 137
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 8589162756
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)