TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9009927.2.1
(404 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB876695.1|CB876695 HP02B11T HP Hordeum vulgare subsp. v... 112 1e-051
gb|CV053597.1|CV053597 BNEL101a5 Barley EST endosperm libra... 110 9e-051
gb|BQ467188.1|BQ467188 HS02O24r HS Hordeum vulgare subsp. v... 111 6e-049
gb|BQ466900.1|BQ466900 HS01O24T HS Hordeum vulgare subsp. v... 107 7e-042
gb|BF620286.3|BF620286 HVSMEc0019F08f Hordeum vulgare seedl... 85 1e-035
gb|BF259477.2|BF259477 HVSMEf0019D12f Hordeum vulgare seedl... 83 1e-033
gb|AV914947.1|AV914947 AV914947 K. Sato unpublished cDNA li... 85 2e-033
gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. v... 87 2e-033
gb|BE558747.2|BE558747 HV_CEb0020E02f Hordeum vulgare seedl... 87 3e-033
gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, sal... 84 3e-033
gb|BM443626.2|BM443626 EBro02_SQ005_P07_R root, 3 week, hyd... 85 4e-033
emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA 81 4e-033
gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedl... 81 4e-033
gb|BG301022.1|BG301022 HVSMEb0019E16f Hordeum vulgare seedl... 84 4e-033
gb|BG301049.1|BG301049 HVSMEb0019G16f Hordeum vulgare seedl... 84 4e-033
emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcriptio... 84 5e-033
gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-a... 84 5e-033
gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedl... 84 5e-033
gb|BM816803.1|BM816803 HC114B11_SK.ab1 HC Hordeum vulgare s... 85 5e-033
gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedl... 84 5e-033
gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, wat... 84 5e-033
gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. v... 84 5e-033
gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedl... 84 5e-033
gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, sal... 84 5e-033
emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA 83 7e-033
gb|BI960347.1|BI960347 HVSMEn0024E22f Hordeum vulgare rachi... 83 7e-033
gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachi... 84 7e-033
gb|BF259663.3|BF259663 HVSMEf0019O20f Hordeum vulgare seedl... 80 1e-032
gb|BF617142.2|BF617142 HVSMEc0014M02f Hordeum vulgare seedl... 81 2e-032
gb|BI957410.1|BI957410 HVSMEn0009G13f Hordeum vulgare rachi... 84 4e-032
gb|CA019900.1|CA019900 HV13K14r HV Hordeum vulgare subsp. v... 85 5e-032
gb|CA013607.1|CA013607 HT08P20r HT Hordeum vulgare subsp. v... 85 7e-032
gb|CK123641.1|CK123641 BES1824104m18 BES1824 Hordeum vulgar... 84 8e-032
emb|X87690.1|HVRNAGAM1 H.vulgare mRNA for GAMyb protein 85 9e-032
gb|CA014662.1|CA014662 HT11P22r HT Hordeum vulgare subsp. v... 85 9e-032
gb|BU998112.1|BU998112 HI10A14r HI Hordeum vulgare subsp. v... 78 1e-031
gb|AY672068.1| Hordeum vulgare subsp. vulgare myb transcrip... 79 8e-031
gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedl... 82 2e-030
gb|BQ753632.1|BQ753632 EBan01_SQ004_M23_R anther, yellow st... 79 3e-030
gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedl... 79 1e-029
gb|AL507585.1|AL507585 AL507585 Hordeum vulgare Barke devel... 80 1e-029
gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike... 76 9e-029
gb|BM370838.2|BM370838 EBro04_SQ002_H14_R root, 3 week, sal... 84 1e-028
gb|AV920069.1|AV920069 AV920069 K. Sato unpublished cDNA li... 75 1e-028
gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, sal... 75 2e-028
emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA 75 4e-028
gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. v... 75 4e-028
gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachi... 75 4e-028
emb|X70879.1|HVMYB1G H.vulgare Myb1 gene 83 9e-028
gb|CV058923.1|CV058923 BNEL42e10 Barley EST endosperm libra... 72 1e-027
gb|BQ764651.1|BQ764651 EBca01_SQ004_C14_R carpel, pre-anthe... 74 2e-027
gb|BF064941.1|BF064941 HV_CEb0022A15f Hordeum vulgare seedl... 74 3e-027
gb|BQ471469.1|BQ471469 HV02I08r HV Hordeum vulgare subsp. v... 73 4e-027
gb|CA002506.1|CA002506 HS07L12r HS Hordeum vulgare subsp. v... 70 5e-027
gb|CB877704.1|CB877704 HP05O05T HP Hordeum vulgare subsp. v... 74 5e-027
gb|CB882601.1|CB882601 HL02F10w HL Hordeum vulgare subsp. v... 70 7e-027
gb|CV056415.1|CV056415 BNEL17E10 Barley EST endosperm libra... 69 1e-026
gb|CV058910.1|CV058910 BNEL42d1 Barley EST endosperm librar... 69 1e-026
gb|CV063729.1|CV063729 BNEL92e6 Barley EST endosperm librar... 69 1e-026
gb|CV058774.1|CV058774 BNEL40g12 Barley EST endosperm libra... 69 1e-026
gb|CV056818.1|CV056818 BNEL20h7 Barley EST endosperm librar... 69 1e-026
gb|CV062377.1|CV062377 BNEL79d11 Barley EST endosperm libra... 69 1e-026
gb|CA019195.1|CA019195 HV11C18r HV Hordeum vulgare subsp. v... 77 1e-026
gb|BG369720.1|BG369720 HVSMEi0025K10f Hordeum vulgare 20 DA... 74 2e-026
gb|AY008692.1| Hordeum vulgare transcription factor GAMyb (... 85 6e-026
gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. v... 71 7e-026
gb|CV062831.1|CV062831 BNEL83e5 Barley EST endosperm librar... 68 9e-026
gb|AL507948.1|AL507948 AL507948 Hordeum vulgare Barke devel... 69 2e-025
gb|BG343954.1|BG343954 HVSMEg0007D14f Hordeum vulgare pre-a... 101 4e-025
gb|CA027463.1|CA027463 HZ59A03r HZ Hordeum vulgare subsp. v... 69 5e-025
gb|BU975173.1|BU975173 HB30F02r BC Hordeum vulgare subsp. v... 73 1e-024
gb|BQ460434.1|BQ460434 HA09K10r HA Hordeum vulgare subsp. v... 73 2e-024
gb|BM371860.2|BM371860 EBma08_SQ004_D12_R maternal, 28 DPA,... 73 2e-024
gb|BI958189.1|BI958189 HVSMEn0013M24f Hordeum vulgare rachi... 84 6e-024
gb|BU975705.1|BU975705 HB32A20r BC Hordeum vulgare subsp. v... 70 2e-023
emb|X70881.1|HVMYB3G H.vulgare myb3 gene 68 1e-022
gb|BF626054.2|BF626054 HVSMEa0015H17f Hordeum vulgare seedl... 69 2e-022
gb|CV063055.1|CV063055 BNEL86b3 Barley EST endosperm librar... 66 4e-022
emb|X70880.1|HVMYB2G H.vulgare Myb2 gene 81 3e-021
gb|AV933832.1|AV933832 AV933832 K. Sato unpublished cDNA li... 67 3e-021
gb|BQ765682.1|BQ765682 EBro03_SQ007_I24_R root, 3 week, wat... 67 3e-021
gb|BI954784.1|BI954784 HVSMEm0019M04f Hordeum vulgare green... 66 5e-021
>gb|CB876695.1|CB876695 HP02B11T HP Hordeum vulgare subsp. vulgare cDNA clone HP02B11
5-PRIME, mRNA sequence
Length = 637
Score = 112 bits (240), Expect(2) = 1e-051
Identities = 41/44 (93%), Positives = 43/44 (97%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ+HGPGNWRSVP NTGLMRCSKSCRLRWTNYLRPGI+RGNFT
Sbjct: 216 YIQQHGPGNWRSVPENTGLMRCSKSCRLRWTNYLRPGIKRGNFT 347
Score = 109 bits (233), Expect(2) = 1e-051
Identities = 41/48 (85%), Positives = 46/48 (95%)
Frame = +3 / +3
Query: 138 HEEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQ 281
HEE II+HLQ+LLGN+WAAIASYLPQRTDNDIKNYWNTHLKKK+K+ Q
Sbjct: 351 HEEGIIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKVKRLQ 494
>gb|CV053597.1|CV053597 BNEL101a5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL101a5 5' similar to typical
P-type R2R3 Myb protein, mRNA sequence
Length = 546
Score = 110 bits (234), Expect(2) = 9e-051
Identities = 43/50 (86%), Positives = 46/50 (92%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQAIG 290
EE +IVHLQ+LLGNRWAAIASYLP+RTDNDIKNYWNTHLKKKLKK Q G
Sbjct: 351 EEKLIVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKKMQDAG 500
Score = 108 bits (231), Expect(2) = 9e-051
Identities = 40/49 (81%), Positives = 42/49 (85%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTPVTRK 147
YIQEHGPGNWR+VP NTGLMRCSKSCRLRWTNYLRP I+RGNF K
Sbjct: 213 YIQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYLRPXIKRGNFNDQEEK 359
Score = 86.8 bits (183), Expect(2) = 1e-021
Identities = 36/50 (72%), Positives = 40/50 (80%)
Frame = -2 / -3
Query: 289 PMACCFLSFFLRWVFQ*FLMSLSVLCGR*EAMAAHLLPSKDWRWTMMASS 140
P +C FLSFFLRWVFQ*FLMSLSVL G+*+A+AA LP WRWTM SS
Sbjct: 499 PASCIFLSFFLRWVFQ*FLMSLSVLSGK*DAIAAQRLPRSAWRWTMSFSS 350
Score = 34.5 bits (69), Expect(2) = 1e-021
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -1 / -3
Query: 41 GTERQLPGPCSWM 3
GT RQ PGPCSWM
Sbjct: 253 GTARQFPGPCSWM 215
>gb|BQ467188.1|BQ467188 HS02O24r HS Hordeum vulgare subsp. vulgare cDNA clone HS02O24
5-PRIME, mRNA sequence
Length = 363
Score = 111 bits (236), Expect(2) = 6e-049
Identities = 40/49 (81%), Positives = 43/49 (87%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTPVTRK 147
Y+QEHGPGNWR+VP TGLMRCSKSCRLRWTNYLRPGI+RGNFT K
Sbjct: 59 YVQEHGPGNWRAVPTRTGLMRCSKSCRLRWTNYLRPGIKRGNFTDQEEK 205
Score = 100 bits (214), Expect(2) = 6e-049
Identities = 38/44 (86%), Positives = 43/44 (97%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLK 272
EE +IVHLQ+LLGNRWAAIASYLP+RTDNDIKNYWNTHLK+KL+
Sbjct: 197 EEKLIVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKRKLQ 328
>gb|BQ466900.1|BQ466900 HS01O24T HS Hordeum vulgare subsp. vulgare cDNA clone HS01O24
5-PRIME, mRNA sequence
Length = 304
Score = 107 bits (228), Expect(2) = 7e-042
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTPVTRK 147
Y+QEHGPGNWR+V TGLMRCSKSCRLRWTNYLRPGI+RGNFT K
Sbjct: 59 YVQEHGPGNWRAVTTRTGLMRCSKSCRLRWTNYLRPGIKRGNFTDQEEK 205
Score = 80.8 bits (170), Expect(2) = 7e-042
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWN 248
EE +IVHLQ+L GNRWAAIA YLP+RTDNDIKNYWN
Sbjct: 197 EEKLIVHLQALFGNRWAAIAFYLPERTDNDIKNYWN 304
>gb|BF620286.3|BF620286 HVSMEc0019F08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0019F08f, mRNA sequence
Length = 690
Score = 84.9 bits (179), Expect(2) = 1e-035
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+EHG G+WR++P GL RC KSCRLRWTNYLRP I+RG F+
Sbjct: 104 HIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFS 235
Score = 83.5 bits (176), Expect(2) = 1e-035
Identities = 31/45 (68%), Positives = 39/45 (86%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 275
EE I+ L +LLGNRW+AIA++L +RTDN+IKNYWNTHLKK+L K
Sbjct: 242 EEQTIIQLHALLGNRWSAIATHLSRRTDNEIKNYWNTHLKKRLAK 376
>gb|BF259477.2|BF259477 HVSMEf0019D12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019D12f, mRNA sequence
Length = 577
Score = 82.6 bits (174), Expect(2) = 1e-033
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ+HG G+WR++P GL RC KSCRLRWTNYL+P I+RG F+
Sbjct: 165 YIQKHGHGSWRALPQLAGLNRCGKSCRLRWTNYLKPDIKRGKFS 296
Score = 79.0 bits (166), Expect(2) = 1e-033
Identities = 29/45 (64%), Positives = 38/45 (84%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 275
EE I+ L ++LGN+W+AIA +LP RTDN+IKN+WNTHL+KKL K
Sbjct: 303 EEQTILQLHTVLGNKWSAIAKHLPGRTDNEIKNFWNTHLRKKLIK 437
>gb|AV914947.1|AV914947 AV914947 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9c13 5', mRNA sequence
Length = 506
Score = 85.4 bits (180), Expect(2) = 2e-033
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I++HG NWR++P GL+RC KSCRLRW NYLRP I+RGNFT
Sbjct: 53 HIEQHGHSNWRALPNQAGLLRCGKSCRLRWINYLRPDIKRGNFT 184
Score = 75.3 bits (158), Expect(2) = 2e-033
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQAIGAIFAP 305
EE I+ L ++LGNRW+ IA+ LP RTDN+IKN W+THLKK+L+ AP
Sbjct: 191 EEGAIIQLHAMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLQSSSKPSGQAAP 355
>gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01B16
3-PRIME, mRNA sequence
Length = 535
Score = 87.2 bits (184), Expect(2) = 2e-033
Identities = 32/49 (65%), Positives = 36/49 (73%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTPVTRK 147
Y+Q + PGNWR +P GL RC KSCRLRWTNYLRP I+RG FTP K
Sbjct: 184 YVQANAPGNWRMLPKLAGLNRCGKSCRLRWTNYLRPDIKRGPFTPEEHK 330
Score = 73.5 bits (154), Expect(2) = 2e-033
Identities = 26/50 (52%), Positives = 39/50 (78%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQAIG 290
E I+ L +++GN+W+ IA+ LP RTDN+IKNYWNT+LKK+L++ +G
Sbjct: 322 EHKSILQLHAIVGNKWSMIAAQLPGRTDNEIKNYWNTNLKKQLRQAALVG 471
>gb|BE558747.2|BE558747 HV_CEb0020E02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020E02f, mRNA sequence
Length = 796
Score = 87.2 bits (184), Expect(2) = 3e-033
Identities = 30/44 (68%), Positives = 36/44 (81%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI +HG G+WRS+P N GL+RC KSCRLRW NYLR G+RRGN +
Sbjct: 292 YIAQHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRDGVRRGNIS 423
Score = 73.5 bits (154), Expect(2) = 3e-033
Identities = 26/43 (60%), Positives = 36/43 (83%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +IV L + LGNRW+ IAS+LP RTDN+IKNYWN+HL +++
Sbjct: 430 EDDLIVKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQI 558
>gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G03 5', mRNA sequence
Length = 501
Score = 84.5 bits (178), Expect(2) = 3e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG GNWR++P GL+RC KSCRLRW NYLRP I+RGNF+
Sbjct: 212 HIHSHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 343
Score = 75.3 bits (158), Expect(2) = 3e-033
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+ L LLGNRW+AIA+ LP RTDN+IKN W+THLKK+L
Sbjct: 350 EEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 478
>gb|BM443626.2|BM443626 EBro02_SQ005_P07_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ005_P07 5', mRNA sequence
Length = 523
Score = 85.4 bits (180), Expect(2) = 4e-033
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I++HG NWR++P GL+RC KSCRLRW NYLRP I+RGNFT
Sbjct: 215 HIEQHGHSNWRALPNQAGLLRCGKSCRLRWINYLRPDIKRGNFT 346
Score = 74.4 bits (156), Expect(2) = 4e-033
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQAIGAIFAP 305
EE I+ L ++LGNRW+ IA+ LP RTDN+IKN W+THLKK+L+ AP
Sbjct: 353 EEDAIIQLHAMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLQSSSKPSGQAAP 517
>emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA
Length = 1102
Score = 81.3 bits (171), Expect(2) = 4e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI+ +G G WRS+P GL+RC KSCRLRW NYLRP ++RGNFT
Sbjct: 125 YIRANGEGCWRSLPKAAGLLRCGKSCRLRWMNYLRPDLKRGNFT 256
Score = 79.0 bits (166), Expect(2) = 4e-033
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 263 EDELIIRLHSLLGNKWSLIAGQLPGRTDNEIKNYWNTHIKRKL 391
>gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004H07f, mRNA sequence
Length = 756
Score = 81.3 bits (171), Expect(2) = 4e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI+ +G G WRS+P GL+RC KSCRLRW NYLRP ++RGNFT
Sbjct: 133 YIRANGEGCWRSLPKAAGLLRCGKSCRLRWMNYLRPDLKRGNFT 264
Score = 79.0 bits (166), Expect(2) = 4e-033
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 271 EDELIIRLHSLLGNKWSLIAGQLPGRTDNEIKNYWNTHIKRKL 399
>gb|BG301022.1|BG301022 HVSMEb0019E16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019E16f, mRNA sequence
Length = 625
Score = 84.5 bits (178), Expect(2) = 4e-033
Identities = 30/44 (68%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI+ HG G WRS+P GL+RC KSCRLRW NYLRP ++RGNFT
Sbjct: 161 YIKAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYLRPDLKRGNFT 292
Score = 75.8 bits (159), Expect(2) = 4e-033
Identities = 26/43 (60%), Positives = 36/43 (83%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
++ +I+ L +LLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 299 DDELIIKLHALLGNKWSLIAGQLPGRTDNEIKNYWNTHIKRKL 427
>gb|BG301049.1|BG301049 HVSMEb0019G16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019G16f, mRNA sequence
Length = 624
Score = 84.5 bits (178), Expect(2) = 4e-033
Identities = 30/44 (68%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI+ HG G WRS+P GL+RC KSCRLRW NYLRP ++RGNFT
Sbjct: 161 YIKAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYLRPDLKRGNFT 292
Score = 75.8 bits (159), Expect(2) = 4e-033
Identities = 26/43 (60%), Positives = 36/43 (83%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
++ +I+ L +LLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 299 DDELIIKLHALLGNKWSLIAGQLPGRTDNEIKNYWNTHIKRKL 427
>emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcription factor
Length = 1180
Score = 84.5 bits (178), Expect(2) = 5e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG GNWR++P GL+RC KSCRLRW NYLRP I+RGNF+
Sbjct: 78 HIHSHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 209
Score = 75.3 bits (158), Expect(2) = 5e-033
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+ L LLGNRW+AIA+ LP RTDN+IKN W+THLKK+L
Sbjct: 216 EEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 344
>gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005B14f, mRNA sequence
Length = 935
Score = 84.5 bits (178), Expect(2) = 5e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG GNWR++P GL+RC KSCRLRW NYLRP I+RGNF+
Sbjct: 210 HIHRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 341
Score = 75.3 bits (158), Expect(2) = 5e-033
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+ L LLGNRW+AIA+ LP RTDN+IKN W+THLKK+L
Sbjct: 348 EEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 476
>gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024H06f, mRNA sequence
Length = 906
Score = 84.5 bits (178), Expect(2) = 5e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG GNWR++P GL+RC KSCRLRW NYLRP I+RGNF+
Sbjct: 206 HIHSHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 337
Score = 75.3 bits (158), Expect(2) = 5e-033
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+ L LLGNRW+AIA+ LP RTDN+IKN W+THLKK+L
Sbjct: 344 EEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 472
>gb|BM816803.1|BM816803 HC114B11_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114B11_SK.ab1 similar to myb protein homolog - rice
gi|1946265|emb|CAA72217.1| (Y11414) myb [Oryza sativa],
mRNA sequence
Length = 879
Score = 85.4 bits (180), Expect(2) = 5e-033
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I++HG NWR++P GL+RC KSCRLRW NYLRP I+RGNFT
Sbjct: 245 HIEQHGHSNWRALPNQAGLLRCGKSCRLRWINYLRPDIKRGNFT 376
Score = 74.4 bits (156), Expect(2) = 5e-033
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQAIGAIFAP 305
EE I+ L ++LGNRW+ IA+ LP RTDN+IKN W+THLKK+L+ AP
Sbjct: 383 EEDAIIQLHAMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLQSSSKPSGQAAP 547
>gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0018A12f, mRNA sequence
Length = 777
Score = 84.5 bits (178), Expect(2) = 5e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG GNWR++P GL+RC KSCRLRW NYLRP I+RGNF+
Sbjct: 196 HIHSHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 327
Score = 75.3 bits (158), Expect(2) = 5e-033
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+ L LLGNRW+AIA+ LP RTDN+IKN W+THLKK+L
Sbjct: 334 EEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 462
>gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_C21 5', mRNA sequence
Length = 681
Score = 84.5 bits (178), Expect(2) = 5e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG GNWR++P GL+RC KSCRLRW NYLRP I+RGNF+
Sbjct: 200 HIHSHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 331
Score = 75.3 bits (158), Expect(2) = 5e-033
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+ L LLGNRW+AIA+ LP RTDN+IKN W+THLKK+L
Sbjct: 338 EEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 466
>gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. vulgare cDNA clone HX13G05
5-PRIME, mRNA sequence
Length = 639
Score = 84.5 bits (178), Expect(2) = 5e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG GNWR++P GL+RC KSCRLRW NYLRP I+RGNF+
Sbjct: 213 HIHSHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 344
Score = 75.3 bits (158), Expect(2) = 5e-033
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+ L LLGNRW+AIA+ LP RTDN+IKN W+THLKK+L
Sbjct: 351 EEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 479
>gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018B03f, mRNA sequence
Length = 609
Score = 84.5 bits (178), Expect(2) = 5e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG GNWR++P GL+RC KSCRLRW NYLRP I+RGNF+
Sbjct: 211 HIHSHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 342
Score = 75.3 bits (158), Expect(2) = 5e-033
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+ L LLGNRW+AIA+ LP RTDN+IKN W+THLKK+L
Sbjct: 349 EEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 477
>gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G02 5', mRNA sequence
Length = 604
Score = 84.5 bits (178), Expect(2) = 5e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG GNWR++P GL+RC KSCRLRW NYLRP I+RGNF+
Sbjct: 212 HIHSHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 343
Score = 75.3 bits (158), Expect(2) = 5e-033
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+ L LLGNRW+AIA+ LP RTDN+IKN W+THLKK+L
Sbjct: 350 EEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 478
>emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA
Length = 1284
Score = 82.6 bits (174), Expect(2) = 7e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI+ HG G WRS+P GL+RC KSCRLRW NYLRP ++RGNF+
Sbjct: 293 YIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFS 424
Score = 76.7 bits (161), Expect(2) = 7e-033
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+++KL
Sbjct: 431 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 559
>gb|BI960347.1|BI960347 HVSMEn0024E22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024E22f, mRNA sequence
Length = 669
Score = 82.6 bits (174), Expect(2) = 7e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI+ HG G WRS+P GL+RC KSCRLRW NYLRP ++RGNF+
Sbjct: 153 YIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFS 284
Score = 76.7 bits (161), Expect(2) = 7e-033
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+++KL
Sbjct: 291 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 419
>gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017M09f, mRNA sequence
Length = 656
Score = 84.0 bits (177), Expect(2) = 7e-033
Identities = 29/44 (65%), Positives = 33/44 (75%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI +HG NWR +P N GL RC KSCRLRWTNYLRP ++ G FT
Sbjct: 94 YITQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGEFT 225
Score = 75.3 bits (158), Expect(2) = 7e-033
Identities = 28/43 (65%), Positives = 35/43 (81%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+ L S++GNRW+ IA+ LP RTDND+KN+WNT LKKKL
Sbjct: 232 EEQTIIKLHSVVGNRWSVIAAQLPGRTDNDVKNHWNTKLKKKL 360
>gb|BF259663.3|BF259663 HVSMEf0019O20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019O20f, mRNA sequence
Length = 528
Score = 80.3 bits (169), Expect(2) = 1e-032
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+++ HG G WRS+P GL+RC KSCRLRW NYLRP ++RGNF+
Sbjct: 149 HVRAHGEGCWRSLPSAAGLLRCGKSCRLRWINYLRPDLKRGNFS 280
Score = 77.6 bits (163), Expect(2) = 1e-032
Identities = 28/43 (65%), Positives = 37/43 (86%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +IV L SLLGN+W+ IA+ LP RTDN+IKNYWNTH+++KL
Sbjct: 287 EDELIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIRRKL 415
>gb|BF617142.2|BF617142 HVSMEc0014M02f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0014M02f, mRNA sequence
Length = 771
Score = 81.3 bits (171), Expect(2) = 2e-032
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI+ +G G WRS+P GL+RC KSCRLRW NYLRP ++RGNFT
Sbjct: 117 YIRANGEGCWRSLPKAAGLLRCGKSCRLRWMNYLRPDLKRGNFT 248
Score = 76.7 bits (161), Expect(2) = 2e-032
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = +3 / +3
Query: 144 EAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 258 DELIIRLHSLLGNKWSLIAGQLPGRTDNEIKNYWNTHIKRKL 383
>gb|BI957410.1|BI957410 HVSMEn0009G13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009G13f, mRNA sequence
Length = 673
Score = 84.5 bits (178), Expect(2) = 4e-032
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG GNWR++P GL+RC KSCRLRW NYLRP I+RGNF+
Sbjct: 32 HIHSHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 163
Score = 72.5 bits (152), Expect(2) = 4e-032
Identities = 29/43 (67%), Positives = 34/43 (79%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+ L LLGNRW+AIA+ LP RTDN IKN W+THLKK+L
Sbjct: 170 EEQSIIQLHQLLGNRWSAIAARLPGRTDN*IKNVWHTHLKKRL 298
>gb|CA019900.1|CA019900 HV13K14r HV Hordeum vulgare subsp. vulgare cDNA clone HV13K14
5-PRIME, mRNA sequence
Length = 465
Score = 84.9 bits (179), Expect(2) = 5e-032
Identities = 28/45 (62%), Positives = 36/45 (80%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
Y+++HG GNW +V NTGL RC KSCRLRW N+LRP +++G FTP
Sbjct: 72 YVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTP 206
Score = 70.7 bits (148), Expect(2) = 5e-032
Identities = 24/41 (58%), Positives = 34/41 (82%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 263
EE +I+ L S +GN+WA +A++LP RTDN+IKNYWNT +K+
Sbjct: 210 EERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 332
>gb|CA013607.1|CA013607 HT08P20r HT Hordeum vulgare subsp. vulgare cDNA clone HT08P20
5-PRIME, mRNA sequence
Length = 569
Score = 84.9 bits (179), Expect(2) = 7e-032
Identities = 28/45 (62%), Positives = 36/45 (80%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
Y+++HG GNW +V NTGL RC KSCRLRW N+LRP +++G FTP
Sbjct: 221 YVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTP 355
Score = 70.7 bits (148), Expect(2) = 7e-032
Identities = 24/41 (58%), Positives = 34/41 (82%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 263
EE +I+ L S +GN+WA +A++LP RTDN+IKNYWNT +K+
Sbjct: 359 EERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 481
>gb|CK123641.1|CK123641 BES1824104m18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M184 5-PRIME, mRNA sequence
Length = 506
Score = 83.5 bits (176), Expect(2) = 8e-032
Identities = 30/44 (68%), Positives = 33/44 (75%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI EHG G W S+P GL RC KSCRLRW NYLRPGI+RGN +
Sbjct: 106 YINEHGEGKWGSLPKRAGLNRCGKSCRLRWLNYLRPGIKRGNIS 237
Score = 71.6 bits (150), Expect(2) = 8e-032
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 266
EE +IV L LLGNRW+ IA LP RTDN+IKNYWNT L K+
Sbjct: 244 EEELIVRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLSKR 369
>emb|X87690.1|HVRNAGAM1 H.vulgare mRNA for GAMyb protein
Length = 2263
Score = 84.9 bits (179), Expect(2) = 9e-032
Identities = 28/45 (62%), Positives = 36/45 (80%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
Y+++HG GNW +V NTGL RC KSCRLRW N+LRP +++G FTP
Sbjct: 446 YVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTP 580
Score = 70.7 bits (148), Expect(2) = 9e-032
Identities = 24/41 (58%), Positives = 34/41 (82%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 263
EE +I+ L S +GN+WA +A++LP RTDN+IKNYWNT +K+
Sbjct: 584 EERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 706
>gb|CA014662.1|CA014662 HT11P22r HT Hordeum vulgare subsp. vulgare cDNA clone HT11P22
5-PRIME, mRNA sequence
Length = 613
Score = 84.9 bits (179), Expect(2) = 9e-032
Identities = 28/45 (62%), Positives = 36/45 (80%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
Y+++HG GNW +V NTGL RC KSCRLRW N+LRP +++G FTP
Sbjct: 231 YVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTP 365
Score = 70.7 bits (148), Expect(2) = 9e-032
Identities = 24/41 (58%), Positives = 34/41 (82%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 263
EE +I+ L S +GN+WA +A++LP RTDN+IKNYWNT +K+
Sbjct: 369 EERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 491
>gb|BU998112.1|BU998112 HI10A14r HI Hordeum vulgare subsp. vulgare cDNA clone HI10A14
5-PRIME, mRNA sequence
Length = 580
Score = 77.6 bits (163), Expect(2) = 1e-031
Identities = 28/44 (63%), Positives = 32/44 (72%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI HG G W SVP GL RC KSCRLRW NYLRP ++RG+F+
Sbjct: 142 YITAHGHGCWSSVPRQAGLQRCGKSCRLRWINYLRPDLKRGSFS 273
Score = 77.1 bits (162), Expect(2) = 1e-031
Identities = 29/46 (63%), Positives = 37/46 (80%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQ 278
EEA+IV L +LGNRWA IA +LP RTDN++KN+WN+ +KKKL Q
Sbjct: 280 EEALIVELHRVLGNRWAQIAKHLPGRTDNEVKNFWNSTIKKKLISQ 417
>gb|AY672068.1| Hordeum vulgare subsp. vulgare myb transcription factor mRNA,
complete cds
Length = 1542
Score = 79.0 bits (166), Expect(2) = 8e-031
Identities = 29/49 (59%), Positives = 40/49 (81%)
Frame = +3 / +2
Query: 138 HEEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQA 284
HEE +IV+L ++LGNRW+ IA+ LP RTDN+IKN+WN+ +KK+LK A
Sbjct: 362 HEEDLIVNLHAILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKMNSA 508
Score = 73.5 bits (154), Expect(2) = 8e-031
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
Y+ G G+W V N GL RC KSCRLRW NYLRP ++RG F+P
Sbjct: 227 YMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSP 361
>gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002G15f, mRNA sequence
Length = 853
Score = 81.7 bits (172), Expect(2) = 2e-030
Identities = 31/67 (46%), Positives = 45/67 (67%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQAIGAIFAPPDXXX 320
EE +I+HL S+LGN+W+ IA+ LP RTDN++KN+WN+ +KKKL+++ A P D
Sbjct: 413 EEDLIIHLHSILGNKWSQIAAQLPGRTDNEVKNFWNSFIKKKLRQRGIDPATHKPLDPDA 592
Query: 321 XXXIVVP 341
VP
Sbjct: 593 VAVAAVP 613
Score = 69.8 bits (146), Expect(2) = 2e-030
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I ++G G W SVP GL RC KSCRLRW NYLRP ++RG F+
Sbjct: 275 HIAKYGNGCWSSVPKIAGLERCGKSCRLRWINYLRPDLKRGAFS 406
>gb|BQ753632.1|BQ753632 EBan01_SQ004_M23_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_M23 5', mRNA sequence
Length = 416
Score = 78.5 bits (165), Expect(2) = 3e-030
Identities = 26/45 (57%), Positives = 34/45 (75%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
+++ HG GNW +V TGL RC KSCRLRW N+LRP +R+G F+P
Sbjct: 12 HVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHLRPNLRKGPFSP 146
Score = 71.2 bits (149), Expect(2) = 3e-030
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQAI 287
EE +I+ L L+GN+WA I++ LP RTDN++KNYWNT K++ + Q++
Sbjct: 150 EERLILRLHGLIGNKWARISAQLPGRTDNEVKNYWNTRFKRRQRAGQSL 296
>gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0017F20f, mRNA sequence
Length = 786
Score = 79.0 bits (166), Expect(2) = 1e-029
Identities = 30/67 (44%), Positives = 44/67 (65%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQAIGAIFAPPDXXX 320
EE +I+HL S+LGN+W+ IA+ LP RTDN++KN+WN+ +KKKL+++ A P
Sbjct: 333 EEDLIIHLHSILGNKWSQIAAQLPGRTDNEVKNFWNSFIKKKLRQRGIDPATHKPLAPAA 512
Query: 321 XXXIVVP 341
V P
Sbjct: 513 VAAAVAP 533
Score = 69.8 bits (146), Expect(2) = 1e-029
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I ++G G W SVP GL RC KSCRLRW NYLRP ++RG F+
Sbjct: 195 HIAKYGNGCWSSVPKIAGLERCGKSCRLRWINYLRPDLKRGAFS 326
>gb|AL507585.1|AL507585 AL507585 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06E05V 5',
mRNA sequence
Length = 666
Score = 80.3 bits (169), Expect(2) = 1e-029
Identities = 26/45 (57%), Positives = 37/45 (82%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
++++HG GNW +V TGL+RC KSCRLRWTN+LRP +++G F+P
Sbjct: 47 HVRQHGEGNWNAVQRITGLLRCGKSCRLRWTNHLRPNLKKGAFSP 181
Score = 68.4 bits (143), Expect(2) = 1e-029
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 266
EE +I L + LGN+WA +A++LP RTDN+IKNYWNT K++
Sbjct: 185 EELLIAQLHAQLGNKWARMATHLPGRTDNEIKNYWNTRAKRR 310
>gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0002J21f, mRNA sequence
Length = 845
Score = 75.8 bits (159), Expect(2) = 9e-029
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI HG W +VP N GL RC KSCRLRW NYLRP ++RG F+
Sbjct: 126 YITAHGHSCWSAVPKNAGLQRCGKSCRLRWINYLRPDLKRGTFS 257
Score = 69.8 bits (146), Expect(2) = 9e-029
Identities = 26/46 (56%), Positives = 35/46 (76%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQ 278
EE I+ + +LGNRWA IA +LP RTDN++KN+WN+ +KKKL Q
Sbjct: 264 EERTILDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIAQ 401
>gb|BM370838.2|BM370838 EBro04_SQ002_H14_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_H14 5', mRNA sequence
Length = 455
Score = 84.5 bits (178), Expect(2) = 1e-028
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG GNWR++P GL+RC KSCRLRW NYLRP I+RGNF+
Sbjct: 212 HIHSHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 343
Score = 60.2 bits (125), Expect(2) = 1e-028
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYW 245
EE I+ L LLGNRW+AIA+ LP RTDN+IKN W
Sbjct: 350 EEQSIIQLHQLLGNRWSAIAAMLPGRTDNEIKNVW 454
>gb|AV920069.1|AV920069 AV920069 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9c13 3', mRNA sequence
Length = 710
Score = 75.3 bits (158), Expect(3) = 1e-028
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +3 / -2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQAIGAIFAP 305
EE I+ L ++LGNRW+ IA+ LP RTDN+IKN W+THLKK+L+ AP
Sbjct: 565 EEGAIIQLHAMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLQSSSKPSGQAAP 401
Score = 62.0 bits (129), Expect(3) = 1e-028
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +1 / -1
Query: 7 QEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRP 108
++HG NWR++P G +RC KSCRLRW NYL P
Sbjct: 698 KQHGHSNWRALPNQAGXLRCGKSCRLRWINYLAP 597
Score = 25.4 bits (49), Expect(3) = 1e-028
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / -2
Query: 100 LRPGIRRGNFT 132
LRP I+RGNFT
Sbjct: 604 LRPDIKRGNFT 572
>gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_O04 5', mRNA sequence
Length = 383
Score = 75.3 bits (158), Expect(2) = 2e-028
Identities = 29/46 (63%), Positives = 38/46 (82%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQ 278
EE IV L +LGNRW+ IAS+LP RTDN+IKN+WN+ +KKKL++Q
Sbjct: 218 EEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQ 355
Score = 68.0 bits (142), Expect(2) = 2e-028
Identities = 26/44 (59%), Positives = 30/44 (68%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG G W SVP L RC KSCRLRW NYLRP ++RG F+
Sbjct: 80 HIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFS 211
>emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA
Length = 1270
Score = 75.3 bits (158), Expect(2) = 4e-028
Identities = 29/46 (63%), Positives = 38/46 (82%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQ 278
EE IV L +LGNRW+ IAS+LP RTDN+IKN+WN+ +KKKL++Q
Sbjct: 290 EEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQ 427
Score = 68.0 bits (142), Expect(2) = 4e-028
Identities = 26/44 (59%), Positives = 30/44 (68%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG G W SVP L RC KSCRLRW NYLRP ++RG F+
Sbjct: 152 HIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFS 283
>gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. vulgare cDNA clone HM13L14
5-PRIME, mRNA sequence
Length = 648
Score = 75.3 bits (158), Expect(2) = 4e-028
Identities = 29/46 (63%), Positives = 38/46 (82%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQ 278
EE IV L +LGNRW+ IAS+LP RTDN+IKN+WN+ +KKKL++Q
Sbjct: 314 EEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQ 451
Score = 68.0 bits (142), Expect(2) = 4e-028
Identities = 26/44 (59%), Positives = 30/44 (68%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG G W SVP L RC KSCRLRW NYLRP ++RG F+
Sbjct: 176 HIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFS 307
>gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E14f, mRNA sequence
Length = 635
Score = 75.3 bits (158), Expect(2) = 4e-028
Identities = 29/46 (63%), Positives = 38/46 (82%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQ 278
EE IV L +LGNRW+ IAS+LP RTDN+IKN+WN+ +KKKL++Q
Sbjct: 305 EEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQ 442
Score = 68.0 bits (142), Expect(2) = 4e-028
Identities = 26/44 (59%), Positives = 30/44 (68%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I HG G W SVP L RC KSCRLRW NYLRP ++RG F+
Sbjct: 167 HIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFS 298
>emb|X70879.1|HVMYB1G H.vulgare Myb1 gene
Length = 2587
Score = 82.6 bits (174), Expect(3) = 9e-028
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI+ HG G WRS+P GL+RC KSCRLRW NYLRP ++RGNF+
Sbjct: 1083 YIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFS 1214
Score = 58.8 bits (122), Expect(3) = 9e-028
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +3 / +2
Query: 183 RWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
RW+ IA LP RTDN+IKNYWNTH+++KL
Sbjct: 1409 RWSLIAGRLPGRTDNEIKNYWNTHIRRKL 1495
Score = 23.1 bits (44), Expect(3) = 9e-028
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNR 185
E+ +I+ L SLLGN+
Sbjct: 1221 EDELIIKLHSLLGNK 1265
>gb|CV058923.1|CV058923 BNEL42e10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL42e10 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 717
Score = 71.6 bits (150), Expect(2) = 1e-027
Identities = 25/45 (55%), Positives = 31/45 (68%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
YI HG G W ++P GL R KSC+LRW NYLRPG++ G F+P
Sbjct: 184 YILRHGHGCWSALPAKAGLQRNGKSCKLRWINYLRPGLKHGMFSP 318
Score = 70.3 bits (147), Expect(2) = 1e-027
Identities = 23/44 (52%), Positives = 37/44 (84%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLK 272
EE ++ L ++LGN+W+ IA +LP RTDN++KNYWN++LKK+++
Sbjct: 322 EEETVMSLHAVLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVE 453
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 128,186,694
Number of Sequences: 312970
Number of extensions: 1481321
Number of successful extensions: 99935
Number of sequences better than 1.0e-020: 106
length of database: 58,378,179
effective HSP length: 49
effective length of database: 43,042,649
effective search space used: 3658625165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)