TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635730.2.1
(1031 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachi... 135 4e-031
gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedl... 134 8e-031
emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA 134 8e-031
gb|BG301022.1|BG301022 HVSMEb0019E16f Hordeum vulgare seedl... 133 2e-030
gb|BG301049.1|BG301049 HVSMEb0019G16f Hordeum vulgare seedl... 133 2e-030
gb|AV914947.1|AV914947 AV914947 K. Sato unpublished cDNA li... 133 2e-030
gb|BM816803.1|BM816803 HC114B11_SK.ab1 HC Hordeum vulgare s... 133 2e-030
gb|BM443626.2|BM443626 EBro02_SQ005_P07_R root, 3 week, hyd... 133 2e-030
gb|BF617142.2|BF617142 HVSMEc0014M02f Hordeum vulgare seedl... 130 1e-029
gb|BI960347.1|BI960347 HVSMEn0024E22f Hordeum vulgare rachi... 129 2e-029
gb|CA019195.1|CA019195 HV11C18r HV Hordeum vulgare subsp. v... 129 2e-029
emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA 129 2e-029
gb|BF259663.3|BF259663 HVSMEf0019O20f Hordeum vulgare seedl... 129 3e-029
gb|BF629773.1|BF629773 HVSMEb0013M11f Hordeum vulgare seedl... 127 7e-029
gb|AY672068.1| Hordeum vulgare subsp. vulgare myb transcrip... 126 2e-028
gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. v... 126 3e-028
gb|BQ753632.1|BQ753632 EBan01_SQ004_M23_R anther, yellow st... 125 4e-028
gb|BF262578.2|BF262578 HV_CEa0004G02f Hordeum vulgare seedl... 125 5e-028
gb|CK123641.1|CK123641 BES1824104m18 BES1824 Hordeum vulgar... 124 7e-028
gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedl... 124 9e-028
gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedl... 124 9e-028
gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedl... 124 9e-028
gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-a... 124 9e-028
gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, sal... 124 9e-028
gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, sal... 124 9e-028
gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, wat... 124 9e-028
gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. v... 124 9e-028
emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcriptio... 124 9e-028
gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedl... 123 1e-027
gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedl... 123 1e-027
gb|BU998112.1|BU998112 HI10A14r HI Hordeum vulgare subsp. v... 122 2e-027
gb|BI957410.1|BI957410 HVSMEn0009G13f Hordeum vulgare rachi... 121 6e-027
gb|CA002506.1|CA002506 HS07L12r HS Hordeum vulgare subsp. v... 121 8e-027
gb|CA013607.1|CA013607 HT08P20r HT Hordeum vulgare subsp. v... 121 8e-027
gb|CA014662.1|CA014662 HT11P22r HT Hordeum vulgare subsp. v... 121 8e-027
gb|CA019900.1|CA019900 HV13K14r HV Hordeum vulgare subsp. v... 121 8e-027
gb|CB882601.1|CB882601 HL02F10w HL Hordeum vulgare subsp. v... 121 8e-027
emb|X87690.1|HVRNAGAM1 H.vulgare mRNA for GAMyb protein 121 8e-027
gb|AV920069.1|AV920069 AV920069 K. Sato unpublished cDNA li... 97 1e-026
gb|BF259477.2|BF259477 HVSMEf0019D12f Hordeum vulgare seedl... 120 2e-026
gb|CV056415.1|CV056415 BNEL17E10 Barley EST endosperm libra... 120 2e-026
gb|CV056818.1|CV056818 BNEL20h7 Barley EST endosperm librar... 120 2e-026
gb|CV058774.1|CV058774 BNEL40g12 Barley EST endosperm libra... 120 2e-026
gb|CV058910.1|CV058910 BNEL42d1 Barley EST endosperm librar... 120 2e-026
gb|CV062377.1|CV062377 BNEL79d11 Barley EST endosperm libra... 120 2e-026
gb|CV063729.1|CV063729 BNEL92e6 Barley EST endosperm librar... 120 2e-026
gb|CV058923.1|CV058923 BNEL42e10 Barley EST endosperm libra... 119 2e-026
gb|BQ467188.1|BQ467188 HS02O24r HS Hordeum vulgare subsp. v... 118 4e-026
gb|AL507585.1|AL507585 AL507585 Hordeum vulgare Barke devel... 118 6e-026
gb|BE558747.2|BE558747 HV_CEb0020E02f Hordeum vulgare seedl... 117 8e-026
gb|CV053597.1|CV053597 BNEL101a5 Barley EST endosperm libra... 117 8e-026
gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike... 117 1e-025
gb|CV062831.1|CV062831 BNEL83e5 Barley EST endosperm librar... 117 1e-025
gb|CA027463.1|CA027463 HZ59A03r HZ Hordeum vulgare subsp. v... 116 1e-025
gb|CB876695.1|CB876695 HP02B11T HP Hordeum vulgare subsp. v... 116 1e-025
gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachi... 116 2e-025
gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, sal... 116 2e-025
gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. v... 116 2e-025
emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA 116 2e-025
gb|BQ764651.1|BQ764651 EBca01_SQ004_C14_R carpel, pre-anthe... 114 7e-025
gb|AL507948.1|AL507948 AL507948 Hordeum vulgare Barke devel... 114 1e-024
gb|CB877704.1|CB877704 HP05O05T HP Hordeum vulgare subsp. v... 114 1e-024
gb|BF620286.3|BF620286 HVSMEc0019F08f Hordeum vulgare seedl... 113 1e-024
gb|BG369720.1|BG369720 HVSMEi0025K10f Hordeum vulgare 20 DA... 113 2e-024
gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. v... 113 2e-024
gb|BI954784.1|BI954784 HVSMEm0019M04f Hordeum vulgare green... 112 4e-024
gb|AV933832.1|AV933832 AV933832 K. Sato unpublished cDNA li... 112 4e-024
gb|BQ765682.1|BQ765682 EBro03_SQ007_I24_R root, 3 week, wat... 112 4e-024
gb|BM370838.2|BM370838 EBro04_SQ002_H14_R root, 3 week, sal... 110 1e-023
emb|X70879.1|HVMYB1G H.vulgare Myb1 gene 75 2e-023
gb|BI958189.1|BI958189 HVSMEn0013M24f Hordeum vulgare rachi... 109 3e-023
gb|AV932650.1|AV932650 AV932650 K. Sato unpublished cDNA li... 109 3e-023
gb|BQ460434.1|BQ460434 HA09K10r HA Hordeum vulgare subsp. v... 107 8e-023
gb|BM371860.2|BM371860 EBma08_SQ004_D12_R maternal, 28 DPA,... 107 8e-023
gb|BU975173.1|BU975173 HB30F02r BC Hordeum vulgare subsp. v... 107 8e-023
gb|BQ466900.1|BQ466900 HS01O24T HS Hordeum vulgare subsp. v... 106 2e-022
gb|BU975705.1|BU975705 HB32A20r BC Hordeum vulgare subsp. v... 106 2e-022
gb|BF626054.2|BF626054 HVSMEa0015H17f Hordeum vulgare seedl... 104 8e-022
gb|BF064941.1|BF064941 HV_CEb0022A15f Hordeum vulgare seedl... 77 1e-021
gb|BI779364.2|BI779364 EBro01_SQ003_M18_R root, 3 week, hyd... 104 1e-021
gb|CV063055.1|CV063055 BNEL86b3 Barley EST endosperm librar... 104 1e-021
gb|BQ471469.1|BQ471469 HV02I08r HV Hordeum vulgare subsp. v... 74 1e-021
gb|CA008589.1|CA008589 HU11H04r HU Hordeum vulgare subsp. v... 103 1e-021
gb|BG369102.2|BG369102 HVSMEi0021L15f Hordeum vulgare 20 DA... 103 2e-021
gb|AY008692.1| Hordeum vulgare transcription factor GAMyb (... 78 5e-021
gb|AL507750.1|AL507750 AL507750 Hordeum vulgare Barke devel... 100 1e-020
>gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017M09f, mRNA sequence
Length = 656
Score = 135 bits (289), Expect = 4e-031
Identities = 48/68 (70%), Positives = 60/68 (88%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW NYLRP+L+HG FTD E+ I+ L+ +G++WSVIA++LPGRTDNDVKN+
Sbjct: 154 RCGKSCRLRWTNYLRPDLKHGEFTDAEEQTIIKLHSVVGNRWSVIAAQLPGRTDNDVKNH 333
Query: 181 WNTKLKKR 204
WNTKLKK+
Sbjct: 334 WNTKLKKK 357
>gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004H07f, mRNA sequence
Length = 756
Score = 134 bits (287), Expect = 8e-031
Identities = 46/71 (64%), Positives = 62/71 (87%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+L+ G FTD+ED LI+ L+ +G+KWS+IA +LPGRTDN++KNY
Sbjct: 193 RCGKSCRLRWMNYLRPDLKRGNFTDDEDELIIRLHSLLGNKWSLIAGQLPGRTDNEIKNY 372
Query: 181 WNTKLKKRYLA 213
WNT +K++ L+
Sbjct: 373 WNTHIKRKLLS 405
>emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA
Length = 1102
Score = 134 bits (287), Expect = 8e-031
Identities = 46/71 (64%), Positives = 62/71 (87%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+L+ G FTD+ED LI+ L+ +G+KWS+IA +LPGRTDN++KNY
Sbjct: 185 RCGKSCRLRWMNYLRPDLKRGNFTDDEDELIIRLHSLLGNKWSLIAGQLPGRTDNEIKNY 364
Query: 181 WNTKLKKRYLA 213
WNT +K++ L+
Sbjct: 365 WNTHIKRKLLS 397
>gb|BG301022.1|BG301022 HVSMEb0019E16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019E16f, mRNA sequence
Length = 625
Score = 133 bits (284), Expect = 2e-030
Identities = 45/70 (64%), Positives = 61/70 (87%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+L+ G FTD++D LI+ L+ +G+KWS+IA +LPGRTDN++KNY
Sbjct: 221 RCGKSCRLRWMNYLRPDLKRGNFTDDDDELIIKLHALLGNKWSLIAGQLPGRTDNEIKNY 400
Query: 181 WNTKLKKRYL 210
WNT +K++ L
Sbjct: 401 WNTHIKRKLL 430
>gb|BG301049.1|BG301049 HVSMEb0019G16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019G16f, mRNA sequence
Length = 624
Score = 133 bits (284), Expect = 2e-030
Identities = 45/70 (64%), Positives = 61/70 (87%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+L+ G FTD++D LI+ L+ +G+KWS+IA +LPGRTDN++KNY
Sbjct: 221 RCGKSCRLRWMNYLRPDLKRGNFTDDDDELIIKLHALLGNKWSLIAGQLPGRTDNEIKNY 400
Query: 181 WNTKLKKRYL 210
WNT +K++ L
Sbjct: 401 WNTHIKRKLL 430
>gb|AV914947.1|AV914947 AV914947 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9c13 5', mRNA sequence
Length = 506
Score = 133 bits (284), Expect = 2e-030
Identities = 47/79 (59%), Positives = 64/79 (81%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+++ G FT EE+ I+ L+ +G++WS IA+RLPGRTDN++KN
Sbjct: 113 RCGKSCRLRWINYLRPDIKRGNFTSEEEGAIIQLHAMLGNRWSTIAARLPGRTDNEIKNV 292
Query: 181 WNTKLKKRYLASSTSTGEA 237
W+T LKKR +SS +G+A
Sbjct: 293 WHTHLKKRLQSSSKPSGQA 349
>gb|BM816803.1|BM816803 HC114B11_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114B11_SK.ab1 similar to myb protein homolog - rice
gi|1946265|emb|CAA72217.1| (Y11414) myb [Oryza sativa],
mRNA sequence
Length = 879
Score = 133 bits (284), Expect = 2e-030
Identities = 47/79 (59%), Positives = 64/79 (81%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+++ G FT EE+ I+ L+ +G++WS IA+RLPGRTDN++KN
Sbjct: 305 RCGKSCRLRWINYLRPDIKRGNFTSEEEDAIIQLHAMLGNRWSTIAARLPGRTDNEIKNV 484
Query: 181 WNTKLKKRYLASSTSTGEA 237
W+T LKKR +SS +G+A
Sbjct: 485 WHTHLKKRLQSSSKPSGQA 541
>gb|BM443626.2|BM443626 EBro02_SQ005_P07_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ005_P07 5', mRNA sequence
Length = 523
Score = 133 bits (284), Expect = 2e-030
Identities = 47/79 (59%), Positives = 64/79 (81%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+++ G FT EE+ I+ L+ +G++WS IA+RLPGRTDN++KN
Sbjct: 275 RCGKSCRLRWINYLRPDIKRGNFTSEEEDAIIQLHAMLGNRWSTIAARLPGRTDNEIKNV 454
Query: 181 WNTKLKKRYLASSTSTGEA 237
W+T LKKR +SS +G+A
Sbjct: 455 WHTHLKKRLQSSSKPSGQA 511
>gb|BF617142.2|BF617142 HVSMEc0014M02f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0014M02f, mRNA sequence
Length = 771
Score = 130 bits (278), Expect = 1e-029
Identities = 45/71 (63%), Positives = 61/71 (85%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+L+ G FTD+ D LI+ L+ +G+KWS+IA +LPGRTDN++KNY
Sbjct: 177 RCGKSCRLRWMNYLRPDLKRGNFTDD*DELIIRLHSLLGNKWSLIAGQLPGRTDNEIKNY 356
Query: 181 WNTKLKKRYLA 213
WNT +K++ L+
Sbjct: 357 WNTHIKRKLLS 389
>gb|BI960347.1|BI960347 HVSMEn0024E22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024E22f, mRNA sequence
Length = 669
Score = 129 bits (277), Expect = 2e-029
Identities = 44/68 (64%), Positives = 59/68 (86%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+L+ G F+ EED LI+ L+ +G+KWS+IA RLPGRTDN++KNY
Sbjct: 213 RCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 392
Query: 181 WNTKLKKR 204
WNT ++++
Sbjct: 393 WNTHIRRK 416
>gb|CA019195.1|CA019195 HV11C18r HV Hordeum vulgare subsp. vulgare cDNA clone HV11C18
5-PRIME, mRNA sequence
Length = 583
Score = 129 bits (277), Expect = 2e-029
Identities = 44/68 (64%), Positives = 59/68 (86%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+L+ G F+ EED LI+ L+ +G+KWS+IA RLPGRTDN++KNY
Sbjct: 35 RCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 214
Query: 181 WNTKLKKR 204
WNT ++++
Sbjct: 215 WNTHIRRK 238
>emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA
Length = 1284
Score = 129 bits (277), Expect = 2e-029
Identities = 44/68 (64%), Positives = 59/68 (86%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+L+ G F+ EED LI+ L+ +G+KWS+IA RLPGRTDN++KNY
Sbjct: 353 RCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 532
Query: 181 WNTKLKKR 204
WNT ++++
Sbjct: 533 WNTHIRRK 556
>gb|BF259663.3|BF259663 HVSMEf0019O20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019O20f, mRNA sequence
Length = 528
Score = 129 bits (276), Expect = 3e-029
Identities = 44/70 (62%), Positives = 61/70 (87%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+L+ G F+ +ED LI+ L+ +G+KWS+IA+RLPGRTDN++KNY
Sbjct: 209 RCGKSCRLRWINYLRPDLKRGNFSRDEDELIVKLHSLLGNKWSLIAARLPGRTDNEIKNY 388
Query: 181 WNTKLKKRYL 210
WNT ++++ L
Sbjct: 389 WNTHIRRKLL 418
>gb|BF629773.1|BF629773 HVSMEb0013M11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013M11f, mRNA sequence
Length = 827
Score = 127 bits (273), Expect = 7e-029
Identities = 45/60 (75%), Positives = 55/60 (91%)
Frame = +1 / +1
Query: 25 RWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNYWNTKLKKR 204
RWLNYLRP++RHGG+T++ED +I SLY IGS+WS+I S+LPGRTDNDVKNYWNTKLKK+
Sbjct: 1 RWLNYLRPDIRHGGYTEQEDRVICSLYASIGSRWSIIGSKLPGRTDNDVKNYWNTKLKKK 180
>gb|AY672068.1| Hordeum vulgare subsp. vulgare myb transcription factor mRNA,
complete cds
Length = 1542
Score = 126 bits (270), Expect = 2e-028
Identities = 44/79 (55%), Positives = 64/79 (81%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+L+ G F+ E+ LI++L+ +G++WS IA+RLPGRTDN++KN+
Sbjct: 287 RCGKSCRLRWINYLRPDLKRGAFSPHEEDLIVNLHAILGNRWSQIAARLPGRTDNEIKNF 466
Query: 181 WNTKLKKRYLASSTSTGEA 237
WN+ +KKR +S ++ A
Sbjct: 467 WNSTIKKRLKMNSAASSPA 523
>gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01B16
3-PRIME, mRNA sequence
Length = 535
Score = 126 bits (269), Expect = 3e-028
Identities = 45/68 (66%), Positives = 57/68 (83%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW NYLRP+++ G FT EE IL L+ +G+KWS+IA++LPGRTDN++KNY
Sbjct: 244 RCGKSCRLRWTNYLRPDIKRGPFTPEEHKSILQLHAIVGNKWSMIAAQLPGRTDNEIKNY 423
Query: 181 WNTKLKKR 204
WNT LKK+
Sbjct: 424 WNTNLKKQ 447
>gb|BQ753632.1|BQ753632 EBan01_SQ004_M23_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_M23 5', mRNA sequence
Length = 416
Score = 125 bits (268), Expect = 4e-028
Identities = 47/74 (63%), Positives = 60/74 (81%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW N+LRP LR G F+ EE+ LIL L+G IG+KW+ I+++LPGRTDN+VKNY
Sbjct: 72 RCGKSCRLRWANHLRPNLRKGPFSPEEERLILRLHGLIGNKWARISAQLPGRTDNEVKNY 251
Query: 181 WNTKLKKRYLASST 222
WNT+ K+R A +
Sbjct: 252 WNTRFKRRQRAGQS 293
>gb|BF262578.2|BF262578 HV_CEa0004G02f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004G02f, mRNA sequence
Length = 869
Score = 125 bits (267), Expect = 5e-028
Identities = 44/62 (70%), Positives = 56/62 (90%)
Frame = +1 / +2
Query: 28 WLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNYWNTKLKKRY 207
WL YLRP+++HGG+T++ED +I SLY IGS+WS+IAS+LPGRTDNDVKNYWNTKLKK+
Sbjct: 2 WLTYLRPDIKHGGYTEQEDMVICSLYNSIGSRWSIIASKLPGRTDNDVKNYWNTKLKKKA 181
Query: 208 LA 213
+A
Sbjct: 182 MA 187
>gb|CK123641.1|CK123641 BES1824104m18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M184 5-PRIME, mRNA sequence
Length = 506
Score = 124 bits (266), Expect = 7e-028
Identities = 44/68 (64%), Positives = 57/68 (83%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRWLNYLRP ++ G +D+E+ LI+ L+ +G++WS+IA RLPGRTDN++KNY
Sbjct: 166 RCGKSCRLRWLNYLRPGIKRGNISDDEEELIVRLHRLLGNRWSLIAGRLPGRTDNEIKNY 345
Query: 181 WNTKLKKR 204
WNT L KR
Sbjct: 346 WNTTLSKR 369
>gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018B03f, mRNA sequence
Length = 609
Score = 124 bits (265), Expect = 9e-028
Identities = 43/68 (63%), Positives = 58/68 (85%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+++ G F+DEE+ I+ L+ +G++WS IA+RLPGRTDN++KN
Sbjct: 271 RCGKSCRLRWINYLRPDIKRGNFSDEEEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNV 450
Query: 181 WNTKLKKR 204
W+T LKKR
Sbjct: 451 WHTHLKKR 474
>gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024H06f, mRNA sequence
Length = 906
Score = 124 bits (265), Expect = 9e-028
Identities = 43/68 (63%), Positives = 58/68 (85%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+++ G F+DEE+ I+ L+ +G++WS IA+RLPGRTDN++KN
Sbjct: 266 RCGKSCRLRWINYLRPDIKRGNFSDEEEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNV 445
Query: 181 WNTKLKKR 204
W+T LKKR
Sbjct: 446 WHTHLKKR 469
>gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0018A12f, mRNA sequence
Length = 777
Score = 124 bits (265), Expect = 9e-028
Identities = 43/68 (63%), Positives = 58/68 (85%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+++ G F+DEE+ I+ L+ +G++WS IA+RLPGRTDN++KN
Sbjct: 256 RCGKSCRLRWINYLRPDIKRGNFSDEEEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNV 435
Query: 181 WNTKLKKR 204
W+T LKKR
Sbjct: 436 WHTHLKKR 459
>gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005B14f, mRNA sequence
Length = 935
Score = 124 bits (265), Expect = 9e-028
Identities = 43/68 (63%), Positives = 58/68 (85%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+++ G F+DEE+ I+ L+ +G++WS IA+RLPGRTDN++KN
Sbjct: 270 RCGKSCRLRWINYLRPDIKRGNFSDEEEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNV 449
Query: 181 WNTKLKKR 204
W+T LKKR
Sbjct: 450 WHTHLKKR 473
>gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G02 5', mRNA sequence
Length = 604
Score = 124 bits (265), Expect = 9e-028
Identities = 43/68 (63%), Positives = 58/68 (85%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+++ G F+DEE+ I+ L+ +G++WS IA+RLPGRTDN++KN
Sbjct: 272 RCGKSCRLRWINYLRPDIKRGNFSDEEEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNV 451
Query: 181 WNTKLKKR 204
W+T LKKR
Sbjct: 452 WHTHLKKR 475
>gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G03 5', mRNA sequence
Length = 501
Score = 124 bits (265), Expect = 9e-028
Identities = 43/68 (63%), Positives = 58/68 (85%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+++ G F+DEE+ I+ L+ +G++WS IA+RLPGRTDN++KN
Sbjct: 272 RCGKSCRLRWINYLRPDIKRGNFSDEEEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNV 451
Query: 181 WNTKLKKR 204
W+T LKKR
Sbjct: 452 WHTHLKKR 475
>gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_C21 5', mRNA sequence
Length = 681
Score = 124 bits (265), Expect = 9e-028
Identities = 43/68 (63%), Positives = 58/68 (85%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+++ G F+DEE+ I+ L+ +G++WS IA+RLPGRTDN++KN
Sbjct: 260 RCGKSCRLRWINYLRPDIKRGNFSDEEEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNV 439
Query: 181 WNTKLKKR 204
W+T LKKR
Sbjct: 440 WHTHLKKR 463
>gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. vulgare cDNA clone HX13G05
5-PRIME, mRNA sequence
Length = 639
Score = 124 bits (265), Expect = 9e-028
Identities = 43/68 (63%), Positives = 58/68 (85%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+++ G F+DEE+ I+ L+ +G++WS IA+RLPGRTDN++KN
Sbjct: 273 RCGKSCRLRWINYLRPDIKRGNFSDEEEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNV 452
Query: 181 WNTKLKKR 204
W+T LKKR
Sbjct: 453 WHTHLKKR 476
>emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcription factor
Length = 1180
Score = 124 bits (265), Expect = 9e-028
Identities = 43/68 (63%), Positives = 58/68 (85%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+++ G F+DEE+ I+ L+ +G++WS IA+RLPGRTDN++KN
Sbjct: 138 RCGKSCRLRWINYLRPDIKRGNFSDEEEQSIIQLHQLLGNRWSAIAARLPGRTDNEIKNV 317
Query: 181 WNTKLKKR 204
W+T LKKR
Sbjct: 318 WHTHLKKR 341
>gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0017F20f, mRNA sequence
Length = 786
Score = 123 bits (264), Expect = 1e-027
Identities = 43/68 (63%), Positives = 59/68 (86%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+L+ G F+ EE+ LI+ L+ +G+KWS IA++LPGRTDN+VKN+
Sbjct: 255 RCGKSCRLRWINYLRPDLKRGAFSQEEEDLIIHLHSILGNKWSQIAAQLPGRTDNEVKNF 434
Query: 181 WNTKLKKR 204
WN+ +KK+
Sbjct: 435 WNSFIKKK 458
>gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002G15f, mRNA sequence
Length = 853
Score = 123 bits (264), Expect = 1e-027
Identities = 43/68 (63%), Positives = 59/68 (86%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+L+ G F+ EE+ LI+ L+ +G+KWS IA++LPGRTDN+VKN+
Sbjct: 335 RCGKSCRLRWINYLRPDLKRGAFSQEEEDLIIHLHSILGNKWSQIAAQLPGRTDNEVKNF 514
Query: 181 WNTKLKKR 204
WN+ +KK+
Sbjct: 515 WNSFIKKK 538
>gb|BU998112.1|BU998112 HI10A14r HI Hordeum vulgare subsp. vulgare cDNA clone HI10A14
5-PRIME, mRNA sequence
Length = 580
Score = 122 bits (262), Expect = 2e-027
Identities = 41/76 (53%), Positives = 62/76 (81%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+L+ G F+ EE++LI+ L+ +G++W+ IA LPGRTDN+VKN+
Sbjct: 202 RCGKSCRLRWINYLRPDLKRGSFSQEEEALIVELHRVLGNRWAQIAKHLPGRTDNEVKNF 381
Query: 181 WNTKLKKRYLASSTST 228
WN+ +KK+ ++ + +
Sbjct: 382 WNSTIKKKLISQAVGS 429
>gb|BI957410.1|BI957410 HVSMEn0009G13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009G13f, mRNA sequence
Length = 673
Score = 121 bits (259), Expect = 6e-027
Identities = 43/68 (63%), Positives = 57/68 (83%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLRP+++ G F+DEE+ I+ L+ +G++WS IA+RLPGRTDN +KN
Sbjct: 92 RCGKSCRLRWINYLRPDIKRGNFSDEEEQSIIQLHQLLGNRWSAIAARLPGRTDN*IKNV 271
Query: 181 WNTKLKKR 204
W+T LKKR
Sbjct: 272 WHTHLKKR 295
>gb|CA002506.1|CA002506 HS07L12r HS Hordeum vulgare subsp. vulgare cDNA clone HS07L12
5-PRIME, mRNA sequence
Length = 514
Score = 121 bits (258), Expect = 8e-027
Identities = 45/68 (66%), Positives = 56/68 (82%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
R GKSCRLRW+NYLRP L+HG F+ EE+ ++SL+ +G+KWS IA LPGRTDN+VKNY
Sbjct: 271 RNGKSCRLRWINYLRPGLKHGMFSAEEEETVMSLHAALGNKWSRIARHLPGRTDNEVKNY 450
Query: 181 WNTKLKKR 204
WN+ LKKR
Sbjct: 451 WNSYLKKR 474
>gb|CA013607.1|CA013607 HT08P20r HT Hordeum vulgare subsp. vulgare cDNA clone HT08P20
5-PRIME, mRNA sequence
Length = 569
Score = 121 bits (258), Expect = 8e-027
Identities = 41/67 (61%), Positives = 57/67 (85%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW N+LRP L+ G FT EE+ LI+ L+ ++G+KW+ +A+ LPGRTDN++KNY
Sbjct: 281 RCGKSCRLRWANHLRPNLKKGAFTPEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNY 460
Query: 181 WNTKLKK 201
WNT++K+
Sbjct: 461 WNTRIKR 481
>gb|CA014662.1|CA014662 HT11P22r HT Hordeum vulgare subsp. vulgare cDNA clone HT11P22
5-PRIME, mRNA sequence
Length = 613
Score = 121 bits (258), Expect = 8e-027
Identities = 41/67 (61%), Positives = 57/67 (85%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW N+LRP L+ G FT EE+ LI+ L+ ++G+KW+ +A+ LPGRTDN++KNY
Sbjct: 291 RCGKSCRLRWANHLRPNLKKGAFTPEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNY 470
Query: 181 WNTKLKK 201
WNT++K+
Sbjct: 471 WNTRIKR 491
>gb|CA019900.1|CA019900 HV13K14r HV Hordeum vulgare subsp. vulgare cDNA clone HV13K14
5-PRIME, mRNA sequence
Length = 465
Score = 121 bits (258), Expect = 8e-027
Identities = 41/67 (61%), Positives = 57/67 (85%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW N+LRP L+ G FT EE+ LI+ L+ ++G+KW+ +A+ LPGRTDN++KNY
Sbjct: 132 RCGKSCRLRWANHLRPNLKKGAFTPEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNY 311
Query: 181 WNTKLKK 201
WNT++K+
Sbjct: 312 WNTRIKR 332
>gb|CB882601.1|CB882601 HL02F10w HL Hordeum vulgare subsp. vulgare cDNA clone HL02F10
3-PRIME, mRNA sequence
Length = 610
Score = 121 bits (258), Expect = 8e-027
Identities = 45/68 (66%), Positives = 56/68 (82%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
R GKSCRLRW+NYLRP L+HG F+ EE+ ++SL+ +G+KWS IA LPGRTDN+VKNY
Sbjct: 256 RNGKSCRLRWINYLRPGLKHGMFSAEEEETVMSLHAALGNKWSRIARHLPGRTDNEVKNY 435
Query: 181 WNTKLKKR 204
WN+ LKKR
Sbjct: 436 WNSYLKKR 459
>emb|X87690.1|HVRNAGAM1 H.vulgare mRNA for GAMyb protein
Length = 2263
Score = 121 bits (258), Expect = 8e-027
Identities = 41/67 (61%), Positives = 57/67 (85%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW N+LRP L+ G FT EE+ LI+ L+ ++G+KW+ +A+ LPGRTDN++KNY
Sbjct: 506 RCGKSCRLRWANHLRPNLKKGAFTPEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNY 685
Query: 181 WNTKLKK 201
WNT++K+
Sbjct: 686 WNTRIKR 706
>gb|AV920069.1|AV920069 AV920069 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9c13 3', mRNA sequence
Length = 710
Score = 97.3 bits (206), Expect(2) = 1e-026
Identities = 35/66 (53%), Positives = 51/66 (77%)
Frame = +1 / -2
Query: 40 LRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNYWNTKLKKRYLASS 219
LRP+++ G FT EE+ I+ L+ +G++WS IA+RLPGRTDN++KN W+T LKKR +SS
Sbjct: 604 LRPDIKRGNFTSEEEGAIIQLHAMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLQSSS 425
Query: 220 TSTGEA 237
+G+A
Sbjct: 424 KPSGQA 407
Score = 43.2 bits (88), Expect(2) = 1e-026
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +1 / -1
Query: 1 RCGKSCRLRWLNYLRP 48
RCGKSCRLRW+NYL P
Sbjct: 644 RCGKSCRLRWINYLAP 597
>gb|BF259477.2|BF259477 HVSMEf0019D12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019D12f, mRNA sequence
Length = 577
Score = 120 bits (256), Expect = 2e-026
Identities = 41/70 (58%), Positives = 56/70 (80%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW NYL+P+++ G F+ EE+ IL L+ +G+KWS IA LPGRTDN++KN+
Sbjct: 225 RCGKSCRLRWTNYLKPDIKRGKFSQEEEQTILQLHTVLGNKWSAIAKHLPGRTDNEIKNF 404
Query: 181 WNTKLKKRYL 210
WNT L+K+ +
Sbjct: 405 WNTHLRKKLI 434
>gb|CV056415.1|CV056415 BNEL17E10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL17E10 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 479
Score = 120 bits (256), Expect = 2e-026
Identities = 44/68 (64%), Positives = 55/68 (80%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
R GKSCRLRW+NYLRP L+HG F+ EE+ ++ L+ +G+KWS IA LPGRTDN+VKNY
Sbjct: 199 RNGKSCRLRWINYLRPGLKHGMFSREEEETVMGLHAALGNKWSQIAQHLPGRTDNEVKNY 378
Query: 181 WNTKLKKR 204
WN+ LKKR
Sbjct: 379 WNSYLKKR 402
>gb|CV056818.1|CV056818 BNEL20h7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL20h7 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 514
Score = 120 bits (256), Expect = 2e-026
Identities = 44/68 (64%), Positives = 55/68 (80%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
R GKSCRLRW+NYLRP L+HG F+ EE+ ++ L+ +G+KWS IA LPGRTDN+VKNY
Sbjct: 279 RNGKSCRLRWINYLRPGLKHGMFSREEEETVMGLHAALGNKWSQIAQHLPGRTDNEVKNY 458
Query: 181 WNTKLKKR 204
WN+ LKKR
Sbjct: 459 WNSYLKKR 482
>gb|CV058774.1|CV058774 BNEL40g12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL40g12 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 488
Score = 120 bits (256), Expect = 2e-026
Identities = 44/68 (64%), Positives = 55/68 (80%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
R GKSCRLRW+NYLRP L+HG F+ EE+ ++ L+ +G+KWS IA LPGRTDN+VKNY
Sbjct: 279 RNGKSCRLRWINYLRPGLKHGMFSREEEETVMGLHAALGNKWSQIAQHLPGRTDNEVKNY 458
Query: 181 WNTKLKKR 204
WN+ LKKR
Sbjct: 459 WNSYLKKR 482
>gb|CV058910.1|CV058910 BNEL42d1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL42d1 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 478
Score = 120 bits (256), Expect = 2e-026
Identities = 44/68 (64%), Positives = 55/68 (80%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
R GKSCRLRW+NYLRP L+HG F+ EE+ ++ L+ +G+KWS IA LPGRTDN+VKNY
Sbjct: 199 RNGKSCRLRWINYLRPGLKHGMFSREEEETVMGLHAALGNKWSQIAQHLPGRTDNEVKNY 378
Query: 181 WNTKLKKR 204
WN+ LKKR
Sbjct: 379 WNSYLKKR 402
>gb|CV062377.1|CV062377 BNEL79d11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL79d11 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 558
Score = 120 bits (256), Expect = 2e-026
Identities = 44/68 (64%), Positives = 55/68 (80%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
R GKSCRLRW+NYLRP L+HG F+ EE+ ++ L+ +G+KWS IA LPGRTDN+VKNY
Sbjct: 279 RNGKSCRLRWINYLRPGLKHGMFSREEEETVMGLHAALGNKWSQIAQHLPGRTDNEVKNY 458
Query: 181 WNTKLKKR 204
WN+ LKKR
Sbjct: 459 WNSYLKKR 482
>gb|CV063729.1|CV063729 BNEL92e6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL92e6 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 478
Score = 120 bits (256), Expect = 2e-026
Identities = 44/68 (64%), Positives = 55/68 (80%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
R GKSCRLRW+NYLRP L+HG F+ EE+ ++ L+ +G+KWS IA LPGRTDN+VKNY
Sbjct: 199 RNGKSCRLRWINYLRPGLKHGMFSREEEETVMGLHAALGNKWSQIAQHLPGRTDNEVKNY 378
Query: 181 WNTKLKKR 204
WN+ LKKR
Sbjct: 379 WNSYLKKR 402
>gb|CV058923.1|CV058923 BNEL42e10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL42e10 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 717
Score = 119 bits (255), Expect = 2e-026
Identities = 44/68 (64%), Positives = 56/68 (82%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
R GKSC+LRW+NYLRP L+HG F+ EE+ ++SL+ +G+KWS IA LPGRTDN+VKNY
Sbjct: 244 RNGKSCKLRWINYLRPGLKHGMFSPEEEETVMSLHAVLGNKWSRIARHLPGRTDNEVKNY 423
Query: 181 WNTKLKKR 204
WN+ LKKR
Sbjct: 424 WNSYLKKR 447
>gb|BQ467188.1|BQ467188 HS02O24r HS Hordeum vulgare subsp. vulgare cDNA clone HS02O24
5-PRIME, mRNA sequence
Length = 363
Score = 118 bits (253), Expect = 4e-026
Identities = 43/71 (60%), Positives = 55/71 (77%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RC KSCRLRW NYLRP ++ G FTD+E+ LI+ L +G++W+ IAS LP RTDND+KNY
Sbjct: 119 RCSKSCRLRWTNYLRPGIKRGNFTDQEEKLIVHLQALLGNRWAAIASYLPERTDNDIKNY 298
Query: 181 WNTKLKKRYLA 213
WNT LK++ A
Sbjct: 299 WNTHLKRKLQA 331
>gb|AL507585.1|AL507585 AL507585 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06E05V 5',
mRNA sequence
Length = 666
Score = 118 bits (252), Expect = 6e-026
Identities = 41/71 (57%), Positives = 57/71 (80%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW N+LRP L+ G F+ +E+ LI L+ ++G+KW+ +A+ LPGRTDN++KNY
Sbjct: 107 RCGKSCRLRWTNHLRPNLKKGAFSPDEELLIAQLHAQLGNKWARMATHLPGRTDNEIKNY 286
Query: 181 WNTKLKKRYLA 213
WNT+ K+R A
Sbjct: 287 WNTRAKRRQRA 319
>gb|BE558747.2|BE558747 HV_CEb0020E02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020E02f, mRNA sequence
Length = 796
Score = 117 bits (251), Expect = 8e-026
Identities = 41/68 (60%), Positives = 55/68 (80%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLR +R G + EED LI+ L+ +G++WS+IAS LPGRTDN++KNY
Sbjct: 352 RCGKSCRLRWINYLRDGVRRGNISKEEDDLIVKLHATLGNRWSLIASHLPGRTDNEIKNY 531
Query: 181 WNTKLKKR 204
WN+ L ++
Sbjct: 532 WNSHLSRQ 555
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 402,269,688
Number of Sequences: 312970
Number of extensions: 6353008
Number of successful extensions: 131611
Number of sequences better than 1.0e-020: 112
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 12252188049
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)