TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8616263.2.1
(509 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM370593.2|BM370593 EBro08_SQ004_L01_R root, 3 week, dro... 146 9e-035
gb|BF256602.3|BF256602 HVSMEf0010H12f Hordeum vulgare seedl... 119 1e-026
gb|BQ659466.1|BQ659466 HE01H04u HE Hordeum vulgare subsp. v... 119 1e-026
gb|BE421314.1|BE421314 HWM008.A07 ITEC HWM Barley Leaf Libr... 67 2e-024
gb|BM375016.1|BM375016 EBem06_SQ002_B13_R embryo, 21 DPA, n... 107 4e-023
gb|AL500002.1|AL500002 AL500002 Hordeum vulgare Barke etiol... 107 5e-023
gb|AV914143.1|AV914143 AV914143 K. Sato unpublished cDNA li... 107 5e-023
gb|AV915913.1|AV915913 AV915913 K. Sato unpublished cDNA li... 107 5e-023
gb|AV917348.1|AV917348 AV917348 K. Sato unpublished cDNA li... 107 5e-023
gb|AV917804.1|AV917804 AV917804 K. Sato unpublished cDNA li... 107 5e-023
gb|AV918146.1|AV918146 AV918146 K. Sato unpublished cDNA li... 107 5e-023
gb|AV918330.1|AV918330 AV918330 K. Sato unpublished cDNA li... 107 5e-023
gb|AV918386.1|AV918386 AV918386 K. Sato unpublished cDNA li... 107 5e-023
gb|AV919189.1|AV919189 AV919189 K. Sato unpublished cDNA li... 107 5e-023
gb|AV919660.1|AV919660 AV919660 K. Sato unpublished cDNA li... 107 5e-023
gb|AV921030.1|AV921030 AV921030 K. Sato unpublished cDNA li... 107 5e-023
gb|AV921340.1|AV921340 AV921340 K. Sato unpublished cDNA li... 107 5e-023
gb|AV922151.1|AV922151 AV922151 K. Sato unpublished cDNA li... 107 5e-023
gb|AV922439.1|AV922439 AV922439 K. Sato unpublished cDNA li... 107 5e-023
gb|AV922527.1|AV922527 AV922527 K. Sato unpublished cDNA li... 107 5e-023
gb|AV930978.1|AV930978 AV930978 K. Sato unpublished cDNA li... 107 5e-023
gb|AJ434805.1|AJ434805 AJ434805 S00002 Hordeum vulgare subs... 107 5e-023
gb|BJ464713.1|BJ464713 BJ464713 K. Sato unpublished cDNA li... 107 5e-023
gb|BJ466235.1|BJ466235 BJ466235 K. Sato unpublished cDNA li... 107 5e-023
gb|BJ466891.1|BJ466891 BJ466891 K. Sato unpublished cDNA li... 107 5e-023
gb|BJ467149.1|BJ467149 BJ467149 K. Sato unpublished cDNA li... 107 5e-023
gb|BJ467932.1|BJ467932 BJ467932 K. Sato unpublished cDNA li... 107 5e-023
gb|BJ468002.1|BJ468002 BJ468002 K. Sato unpublished cDNA li... 107 5e-023
gb|BJ468113.1|BJ468113 BJ468113 K. Sato unpublished cDNA li... 107 5e-023
gb|BJ468402.1|BJ468402 BJ468402 K. Sato unpublished cDNA li... 107 5e-023
gb|BJ468540.1|BJ468540 BJ468540 K. Sato unpublished cDNA li... 107 5e-023
gb|BU989176.1|BU989176 HF21A07r HF Hordeum vulgare subsp. v... 107 5e-023
gb|CA000217.1|CA000217 HS09L06u HS Hordeum vulgare subsp. v... 107 5e-023
gb|CA000352.1|CA000352 HS08P05u HS Hordeum vulgare subsp. v... 107 5e-023
gb|CA004933.1|CA004933 HU12M11u HU Hordeum vulgare subsp. v... 107 5e-023
gb|CA006323.1|CA006323 HU14F11u HU Hordeum vulgare subsp. v... 107 5e-023
gb|CA006380.1|CA006380 HU14H21u HU Hordeum vulgare subsp. v... 107 5e-023
gb|CA011357.1|CA011357 HT06C03u HT Hordeum vulgare subsp. v... 107 5e-023
gb|CA015948.1|CA015948 HV11J19u HV Hordeum vulgare subsp. v... 107 5e-023
gb|CA016005.1|CA016005 HV11A05u HV Hordeum vulgare subsp. v... 107 5e-023
gb|CA017123.1|CA017123 HV14L14u HV Hordeum vulgare subsp. v... 107 5e-023
gb|CA018696.1|CA018696 HV09G03r HV Hordeum vulgare subsp. v... 107 5e-023
gb|BQ768200.1|BQ768200 EBro08_SQ011_C03_R root, 3 week, dro... 106 7e-023
gb|BG344484.2|BG344484 HVSMEg0009G13f Hordeum vulgare pre-a... 63 2e-022
gb|AV916093.1|AV916093 AV916093 K. Sato unpublished cDNA li... 105 2e-022
gb|AL450828.1|AL450828 AL450828 Hordeum vulgare Barke etiol... 105 2e-022
gb|BI958400.1|BI958400 HVSMEn0014M17f Hordeum vulgare rachi... 105 2e-022
gb|AV922440.1|AV922440 AV922440 K. Sato unpublished cDNA li... 105 2e-022
gb|BM370878.2|BM370878 EBro04_SQ002_K08_R root, 3 week, sal... 98 4e-022
gb|BF255910.2|BF255910 HVSMEf0008C22f Hordeum vulgare seedl... 104 4e-022
gb|CA000076.1|CA000076 HS16E10u HS Hordeum vulgare subsp. v... 104 4e-022
gb|BM370831.2|BM370831 EBro04_SQ002_G23_R root, 3 week, sal... 97 8e-022
gb|CA000487.1|CA000487 HS08C19u HS Hordeum vulgare subsp. v... 100 8e-021
>gb|BM370593.2|BM370593 EBro08_SQ004_L01_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_L01 5', mRNA sequence
Length = 655
Score = 146 bits (313), Expect = 9e-035
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D ND +NLVDP +RNT+ VP GWVAIRF+A+NPGVW MHCHL+ H +WGL MAWLV
Sbjct: 272 DAANDTDGYNLVDPEQRNTISVPTAGWVAIRFVANNPGVWIMHCHLDVHLSWGLSMAWLV 451
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
DG LP+ KL P PSD+P C
Sbjct: 452 NDGPLPNHKLPPAPSDIPSC 511
Score = 102 bits (217), Expect = 2e-021
Identities = 43/72 (59%), Positives = 48/72 (66%)
Frame = +1 / -2
Query: 268 QHLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGT 447
+ LG SDG G S W G PS T+HA+ RP + C SKWQCM TPGL A KRMAT P GT
Sbjct: 513 EQLGISDGAGGSLWFGSGPSLTSHAMDRPQLRCTSKWQCMIHTPGLLATKRMATQPAVGT 334
Query: 448 PTVLRSTGSTRL 483
V R +GSTRL
Sbjct: 333 LMVFRCSGSTRL 298
>gb|BF256602.3|BF256602 HVSMEf0010H12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010H12f, mRNA sequence
Length = 667
Score = 119 bits (254), Expect = 1e-026
Identities = 44/75 (58%), Positives = 54/75 (72%)
Frame = -1 / +1
Query: 491 SKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGSLP 312
S +NLVDPV RNT+ VP GGW IRF+A+NPG+WF HCHL+AH GL M + V +G+
Sbjct: 142 SAYNLVDPVARNTIAVPTGGWAVIRFVANNPGMWFFHCHLDAHVPMGLGMVFAVENGTTA 321
Query: 311 HQKLLPPPSDLPKC* 267
L PPP+DLP C*
Sbjct: 322 DSMLPPPPADLPVC* 366
>gb|BQ659466.1|BQ659466 HE01H04u HE Hordeum vulgare subsp. vulgare cDNA clone HE01H04
3-PRIME, mRNA sequence
Length = 547
Score = 119 bits (254), Expect = 1e-026
Identities = 44/75 (58%), Positives = 54/75 (72%)
Frame = -1 / -2
Query: 491 SKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGSLP 312
S +NLVDPV RNT+ VP GGW IRF+A+NPG+WF HCHL+AH GL M + V +G+
Sbjct: 507 SAYNLVDPVARNTIAVPTGGWAVIRFVANNPGMWFFHCHLDAHVPMGLGMVFAVENGTTA 328
Query: 311 HQKLLPPPSDLPKC* 267
L PPP+DLP C*
Sbjct: 327 DSMLPPPPADLPVC* 283
>gb|BE421314.1|BE421314 HWM008.A07 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM008.A07, mRNA sequence
Length = 905
Score = 67.0 bits (140), Expect(2) = 2e-024
Identities = 25/40 (62%), Positives = 27/40 (67%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVW 390
D D KFNL +P +RNTV VP GW IRF ADNPGVW
Sbjct: 446 DAEKDADKFNLENPPQRNTVAVPVNGWAVIRFRADNPGVW 565
Score = 64.3 bits (134), Expect(2) = 2e-024
Identities = 27/45 (60%), Positives = 29/45 (64%)
Frame = -1 / +1
Query: 401 PGVWFMHCHLEAHTTWGLRMAWLVLDGSLPHQKLLPPPSDLPKC* 267
PG MHCHL+ H TWGL MA+LV DG Q L PP DLP C*
Sbjct: 553 PGGVVMHCHLDVHITWGLAMAFLVEDGYGELQSLEAPPVDLPMC* 687
>gb|BM375016.1|BM375016 EBem06_SQ002_B13_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_B13 5', mRNA sequence
Length = 389
Score = 107 bits (229), Expect = 4e-023
Identities = 39/57 (68%), Positives = 42/57 (73%)
Frame = -1 / -3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMA 339
D D +KFNL DP RNTVGVP GW IRF+ADNPGVW MHCHL+ H TWGL MA
Sbjct: 171 DAATDTAKFNLDDPPMRNTVGVPVNGWAVIRFVADNPGVWLMHCHLDVHITWGLAMA 1
>gb|AL500002.1|AL500002 AL500002 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04H05r 3', mRNA sequence
Length = 597
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 411 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 232
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 231 ENGPTLDSTLPPPPEDLPSC 172
>gb|AV914143.1|AV914143 AV914143 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4o18 5', mRNA sequence
Length = 539
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 227 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 406
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 407 ENGPTLDSTLPPPPEDLPSC 466
>gb|AV915913.1|AV915913 AV915913 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16j17 5', mRNA sequence
Length = 533
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 188 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 367
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 368 ENGPTLDSTLPPPPEDLPSC 427
>gb|AV917348.1|AV917348 AV917348 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18i23 5', mRNA sequence
Length = 549
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 53 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 232
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 233 ENGPTLDSTLPPPPEDLPSC 292
>gb|AV917804.1|AV917804 AV917804 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11j12 3', mRNA sequence
Length = 591
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 316 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 137
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 136 ENGPTLDSTLPPPPEDLPSC 77
>gb|AV918146.1|AV918146 AV918146 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20a14 3', mRNA sequence
Length = 698
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 423 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 244
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 243 ENGPTLDSTLPPPPEDLPSC 184
>gb|AV918330.1|AV918330 AV918330 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l02 3', mRNA sequence
Length = 624
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 344 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 165
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 164 ENGPTLDSTLPPPPEDLPSC 105
>gb|AV918386.1|AV918386 AV918386 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n23 3', mRNA sequence
Length = 638
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 475 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 296
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 295 ENGPTLDSTLPPPPEDLPSC 236
>gb|AV919189.1|AV919189 AV919189 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4o18 3', mRNA sequence
Length = 636
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 473 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 294
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 293 ENGPTLDSTLPPPPEDLPSC 234
>gb|AV919660.1|AV919660 AV919660 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7a21 3', mRNA sequence
Length = 710
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 434 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 255
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 254 ENGPTLDSTLPPPPEDLPSC 195
>gb|AV921030.1|AV921030 AV921030 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16j17 3', mRNA sequence
Length = 663
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 473 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 294
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 293 ENGPTLDSTLPPPPEDLPSC 234
>gb|AV921340.1|AV921340 AV921340 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23b16 3', mRNA sequence
Length = 654
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 378 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 199
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 198 ENGPTLDSTLPPPPEDLPSC 139
>gb|AV922151.1|AV922151 AV922151 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19n20 3', mRNA sequence
Length = 674
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 333 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 154
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 153 ENGPTLDSTLPPPPEDLPSC 94
>gb|AV922439.1|AV922439 AV922439 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18d09 3', mRNA sequence
Length = 633
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 360 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 181
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 180 ENGPTLDSTLPPPPEDLPSC 121
>gb|AV922527.1|AV922527 AV922527 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18i23 3', mRNA sequence
Length = 503
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 471 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 292
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 291 ENGPTLDSTLPPPPEDLPSC 232
>gb|AV930978.1|AV930978 AV930978 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18b14 3', mRNA sequence
Length = 742
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 465 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 286
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 285 ENGPTLDSTLPPPPEDLPSC 226
>gb|AJ434805.1|AJ434805 AJ434805 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200063E08F1, mRNA sequence
Length = 505
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 101 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 280
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 281 ENGPTLDSTLPPPPEDLPSC 340
>gb|BJ464713.1|BJ464713 BJ464713 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c22 5', mRNA sequence
Length = 597
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / +3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 306 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 485
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 486 ENGPTLDSTLPPPPEDLPSC 545
>gb|BJ466235.1|BJ466235 BJ466235 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31e14 3', mRNA sequence
Length = 727
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 493 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 314
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 313 ENGPTLDSTLPPPPEDLPSC 254
>gb|BJ466891.1|BJ466891 BJ466891 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34n08 3', mRNA sequence
Length = 637
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 493 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 314
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 313 ENGPTLDSTLPPPPEDLPSC 254
>gb|BJ467149.1|BJ467149 BJ467149 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36g04 3', mRNA sequence
Length = 463
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 320 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 141
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 140 ENGPTLDSTLPPPPEDLPSC 81
>gb|BJ467932.1|BJ467932 BJ467932 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30f23 3', mRNA sequence
Length = 572
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 496 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 317
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 316 ENGPTLDSTLPPPPEDLPSC 257
>gb|BJ468002.1|BJ468002 BJ468002 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30l02 3', mRNA sequence
Length = 641
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 473 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 294
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 293 ENGPTLDSTLPPPPEDLPSC 234
>gb|BJ468113.1|BJ468113 BJ468113 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c22 3', mRNA sequence
Length = 639
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 494 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 315
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 314 ENGPTLDSTLPPPPEDLPSC 255
>gb|BJ468402.1|BJ468402 BJ468402 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38k12 3', mRNA sequence
Length = 719
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 494 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 315
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 314 ENGPTLDSTLPPPPEDLPSC 255
>gb|BJ468540.1|BJ468540 BJ468540 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39e03 3', mRNA sequence
Length = 542
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 468 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 289
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 288 ENGPTLDSTLPPPPEDLPSC 229
>gb|BU989176.1|BU989176 HF21A07r HF Hordeum vulgare subsp. vulgare cDNA clone HF21A07
5-PRIME, mRNA sequence
Length = 455
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 17 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 196
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 197 ENGPTLDSTLPPPPEDLPSC 256
>gb|CA000217.1|CA000217 HS09L06u HS Hordeum vulgare subsp. vulgare cDNA clone HS09L06
3-PRIME, mRNA sequence
Length = 552
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 434 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 255
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 254 ENGPTLDSTLPPPPEDLPSC 195
>gb|CA000352.1|CA000352 HS08P05u HS Hordeum vulgare subsp. vulgare cDNA clone HS08P05
3-PRIME, mRNA sequence
Length = 541
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 388 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 209
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 208 ENGPTLDSTLPPPPEDLPSC 149
>gb|CA004933.1|CA004933 HU12M11u HU Hordeum vulgare subsp. vulgare cDNA clone HU12M11
3-PRIME, mRNA sequence
Length = 503
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 355 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 176
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 175 ENGPTLDSTLPPPPEDLPSC 116
>gb|CA006323.1|CA006323 HU14F11u HU Hordeum vulgare subsp. vulgare cDNA clone HU14F11
3-PRIME, mRNA sequence
Length = 495
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 355 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 176
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 175 ENGPTLDSTLPPPPEDLPSC 116
>gb|CA006380.1|CA006380 HU14H21u HU Hordeum vulgare subsp. vulgare cDNA clone HU14H21
3-PRIME, mRNA sequence
Length = 560
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 392 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 213
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 212 ENGPTLDSTLPPPPEDLPSC 153
>gb|CA011357.1|CA011357 HT06C03u HT Hordeum vulgare subsp. vulgare cDNA clone HT06C03
3-PRIME, mRNA sequence
Length = 463
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 358 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 179
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 178 ENGPTLDSTLPPPPEDLPSC 119
>gb|CA015948.1|CA015948 HV11J19u HV Hordeum vulgare subsp. vulgare cDNA clone HV11J19
3-PRIME, mRNA sequence
Length = 426
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 389 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 210
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 209 ENGPTLDSTLPPPPEDLPSC 150
>gb|CA016005.1|CA016005 HV11A05u HV Hordeum vulgare subsp. vulgare cDNA clone HV11A05
3-PRIME, mRNA sequence
Length = 555
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 487 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 308
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 307 ENGPTLDSTLPPPPEDLPSC 248
>gb|CA017123.1|CA017123 HV14L14u HV Hordeum vulgare subsp. vulgare cDNA clone HV14L14
3-PRIME, mRNA sequence
Length = 516
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 449 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 270
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 269 ENGPTLDSTLPPPPEDLPSC 210
>gb|CA018696.1|CA018696 HV09G03r HV Hordeum vulgare subsp. vulgare cDNA clone HV09G03
5-PRIME, mRNA sequence
Length = 663
Score = 107 bits (228), Expect = 5e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / +1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 379 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 558
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 559 ENGPTLDSTLPPPPEDLPSC 618
>gb|BQ768200.1|BQ768200 EBro08_SQ011_C03_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_C03 5', mRNA sequence
Length = 490
Score = 106 bits (227), Expect = 7e-023
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = -1 / +3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 9 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSRGMAVAFVV 188
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 189 ENGPTLDSTLPPPPEDLPSC 248
>gb|BG344484.2|BG344484 HVSMEg0009G13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009G13f, mRNA sequence
Length = 626
Score = 62.9 bits (131), Expect(2) = 2e-022
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = -1 / +2
Query: 398 GVWFMHCHLEAHTTWGLRMAWLVLDGSLPHQKLLPPPSDLPKC* 267
G+WF HCHL+AH GL M + V +G+ L PPP+DLP C*
Sbjct: 209 GMWFFHCHLDAHVPMGLGMVFAVENGTTADSMLPPPPADLPVC* 340
Score = 62.0 bits (129), Expect(2) = 2e-022
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = -1 / +2
Query: 491 SKFNLVDPVERNTVGVPAGGWVAIRFLADNPG 396
S +NLVDPV RNT+ VP GGW IRF+A+NPG
Sbjct: 29 SAYNLVDPVARNTIAVPTGGWAVIRFVANNPG 124
>gb|AV916093.1|AV916093 AV916093 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g21 5', mRNA sequence
Length = 533
Score = 105 bits (224), Expect = 2e-022
Identities = 39/79 (49%), Positives = 50/79 (63%)
Frame = -1 / +1
Query: 506 PVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVL 327
P D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A+
Sbjct: 40 PXKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFXXE 219
Query: 326 DGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 220 NGPTLDSTLPPPPEDLPSC 276
>gb|AL450828.1|AL450828 AL450828 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04H03u 5', mRNA sequence
Length = 524
Score = 105 bits (223), Expect = 2e-022
Identities = 39/80 (48%), Positives = 52/80 (65%)
Frame = -1 / +3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 156 DAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 335
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP +LP C
Sbjct: 336 ENGPTLDSTLPPPPENLPSC 395
>gb|BI958400.1|BI958400 HVSMEn0014M17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014M17f, mRNA sequence
Length = 677
Score = 105 bits (223), Expect = 2e-022
Identities = 36/47 (76%), Positives = 41/47 (87%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLE 369
DP+NDP+K+NLVDPVERNTV VP GWVA+RFLADNP VW MHCH +
Sbjct: 536 DPINDPAKYNLVDPVERNTVSVPTAGWVAVRFLADNPXVWLMHCHFD 676
>gb|AV922440.1|AV922440 AV922440 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18d10 3', mRNA sequence
Length = 455
Score = 105 bits (223), Expect = 2e-022
Identities = 39/80 (48%), Positives = 51/80 (63%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D D + +N VDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V
Sbjct: 334 DTEKDVATYNXVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVV 155
Query: 329 LDGSLPHQKLLPPPSDLPKC 270
+G L PPP DLP C
Sbjct: 154 ENGPTLDSTLPPPPEDLPSC 95
>gb|BM370878.2|BM370878 EBro04_SQ002_K08_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_K08 5', mRNA sequence
Length = 483
Score = 98.2 bits (208), Expect(2) = 4e-022
Identities = 39/73 (53%), Positives = 49/73 (67%)
Frame = -1 / +3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
D + + +NLV+P RNTV VP GGW IRF+A+NPG+WFMHCHL+AH GL M + V
Sbjct: 12 DTFDPNATYNLVNPRVRNTVIVPGGGWTVIRFVANNPGMWFMHCHLDAHLPLGLAMVFEV 191
Query: 329 LDGSLPHQKLLPP 291
L+G P PP
Sbjct: 192 LNGPAPDILPPPP 230
Score = 25.4 bits (49), Expect(2) = 4e-022
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1 / +3
Query: 302 LLPPPSDLPKC 270
L PPP D PKC
Sbjct: 216 LPPPPEDFPKC 248
>gb|BF255910.2|BF255910 HVSMEf0008C22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0008C22f, mRNA sequence
Length = 868
Score = 104 bits (221), Expect = 4e-022
Identities = 38/72 (52%), Positives = 49/72 (68%)
Frame = -1 / -2
Query: 485 FNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGSLPHQ 306
+NLVDP RNTV VP GW +RF+ NPGVWF+HCH E H++ G+ +A++V +G
Sbjct: 456 YNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVVENGPTLDS 277
Query: 305 KLLPPPSDLPKC 270
L PPP DLP C
Sbjct: 276 TLPPPPEDLPSC 241
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 230,450,623
Number of Sequences: 312970
Number of extensions: 3477703
Number of successful extensions: 96532
Number of sequences better than 1.0e-020: 73
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 5084831801
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)