TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8228841.2.1
(621 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike... 90 2e-025
gb|BQ472448.1|BQ472448 HB09J14T BC Hordeum vulgare subsp. v... 83 6e-025
gb|BQ472509.1|BQ472509 HB09F20T BC Hordeum vulgare subsp. v... 83 8e-025
gb|BQ659818.1|BQ659818 HF01M24w HF Hordeum vulgare subsp. v... 90 1e-024
gb|CK124362.1|CK124362 BES1824108i03 BES1824 Hordeum vulgar... 90 1e-024
gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA... 90 1e-024
gb|BE601804.3|BE601804 HVSMEh0099J17f Hordeum vulgare 5-45 ... 90 1e-024
gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. v... 90 1e-024
gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. v... 90 1e-024
gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. v... 90 1e-024
gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike... 90 1e-024
gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 ... 90 1e-024
gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA li... 82 2e-024
gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA li... 82 2e-024
gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA li... 82 2e-024
gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA li... 82 2e-024
gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA li... 82 2e-024
gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA li... 82 2e-024
gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA li... 82 2e-024
gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA li... 82 2e-024
gb|BU977487.1|BU977487 HA11I05r HA Hordeum vulgare subsp. v... 82 2e-024
gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA li... 82 2e-024
gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. v... 82 2e-024
gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA li... 82 2e-024
gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA li... 82 2e-024
gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA li... 82 2e-024
gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA li... 82 2e-024
gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. v... 82 2e-024
gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. v... 82 2e-024
gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA li... 82 2e-024
gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. v... 82 2e-024
gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA li... 82 2e-024
gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. v... 82 2e-024
gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA li... 82 2e-024
gb|BU968461.1|BU968461 HB07J14r BC Hordeum vulgare subsp. v... 82 2e-024
gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA li... 82 2e-024
gb|BU968389.1|BU968389 HB07F20r BC Hordeum vulgare subsp. v... 82 2e-024
gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike... 82 2e-024
gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, n... 82 2e-024
gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Li... 81 3e-024
gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day ger... 80 5e-024
gb|BE454083.2|BE454083 HVSMEh0080E16f Hordeum vulgare 5-45 ... 87 7e-024
gb|BJ467618.1|BJ467618 BJ467618 K. Sato unpublished cDNA li... 87 7e-024
gb|BM373002.2|BM373002 EBma04_SQ002_L05_R maternal, 10 DPA,... 80 7e-024
gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA li... 80 7e-024
gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots... 71 1e-023
gb|BE601810.2|BE601810 HVSMEh0099K03f Hordeum vulgare 5-45 ... 86 2e-023
gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, ... 79 2e-023
gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day ger... 79 3e-023
gb|BU995809.1|BU995809 HM11G24r HM Hordeum vulgare subsp. v... 85 6e-023
gb|BQ468777.1|BQ468777 HM02F02r HM Hordeum vulgare subsp. v... 85 6e-023
gb|CA018105.1|CA018105 HV07H15r HV Hordeum vulgare subsp. v... 85 6e-023
gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. v... 83 9e-023
gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA li... 83 9e-023
gb|BJ474408.1|BJ474408 BJ474408 K. Sato unpublished cDNA li... 84 2e-022
gb|BJ473760.1|BJ473760 BJ473760 K. Sato unpublished cDNA li... 84 2e-022
gb|AV936469.1|AV936469 AV936469 K. Sato unpublished cDNA li... 84 2e-022
gb|BJ463709.1|BJ463709 BJ463709 K. Sato unpublished cDNA li... 84 2e-022
gb|BF623927.2|BF623927 HVSMEa0007M14f Hordeum vulgare seedl... 79 3e-022
gb|BJ467881.1|BJ467881 BJ467881 K. Sato unpublished cDNA li... 84 4e-022
gb|CB881964.1|CB881964 HM11G24w HM Hordeum vulgare subsp. v... 85 6e-022
gb|BJ475687.1|BJ475687 BJ475687 K. Sato unpublished cDNA li... 82 6e-022
gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow st... 83 6e-022
gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. v... 83 1e-021
gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA li... 82 1e-021
gb|BM373123.2|BM373123 EBma04_SQ003_D03_R maternal, 10 DPA,... 73 1e-021
gb|CA023147.1|CA023147 HZ45F22r HZ Hordeum vulgare subsp. v... 65 4e-021
gb|BI949909.1|BI949909 HVSMEl0016O06f Hordeum vulgare spike... 90 9e-021
>gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006L16f, mRNA sequence
Length = 833
Score = 89.5 bits (189), Expect(2) = 2e-025
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +3 / -3
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
I D ++D VR+ Y + +I+ LK AID GA V G+F WSLLDNFEW GYT R+GIVYVD
Sbjct: 585 IADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVD 409
Score = 46.0 bits (94), Expect(2) = 2e-025
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +3 / -3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W Y+ P G+ + ++K +YGNPP+ ++ENG+
Sbjct: 702 WFYIVPWGMNKAVTYVKERYGNPPMILSENGM 607
>gb|BQ472448.1|BQ472448 HB09J14T BC Hordeum vulgare subsp. vulgare cDNA clone HB09J14
5-PRIME, mRNA sequence
Length = 607
Score = 83.1 bits (175), Expect(2) = 6e-025
Identities = 29/68 (42%), Positives = 46/68 (67%)
Frame = +3 / +2
Query: 123 DTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTER 302
D + LPIK+AL D R++Y +H+ L AI +++G+FTW+ +D FEW GY +R
Sbjct: 149 DCFNSSLPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDR 328
Query: 303 YGIVYVDR 326
+G++Y+DR
Sbjct: 329 FGLIYIDR 352
Score = 50.6 bits (104), Expect(2) = 6e-025
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPL 143
++++YP G+ +++++ K +Y NP VY+ ENGI D P+
Sbjct: 50 FLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDDCFNSSLPI 175
>gb|BQ472509.1|BQ472509 HB09F20T BC Hordeum vulgare subsp. vulgare cDNA clone HB09F20
5-PRIME, mRNA sequence
Length = 558
Score = 82.6 bits (174), Expect(2) = 8e-025
Identities = 28/68 (41%), Positives = 46/68 (67%)
Frame = +3 / +2
Query: 123 DTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTER 302
+ + LPIK+AL D R++Y +H+ L AI +++G+FTW+ +D FEW GY +R
Sbjct: 149 ECNNSSLPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDR 328
Query: 303 YGIVYVDR 326
+G++Y+DR
Sbjct: 329 FGLIYIDR 352
Score = 50.6 bits (104), Expect(2) = 8e-025
Identities = 14/42 (33%), Positives = 29/42 (69%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPL 143
++++YP G+ +++++ K +Y NP VY+ ENGI + + P+
Sbjct: 50 FLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDECNNSSLPI 175
>gb|BQ659818.1|BQ659818 HF01M24w HF Hordeum vulgare subsp. vulgare cDNA clone HF01M24
3-PRIME, mRNA sequence
Length = 681
Score = 89.5 bits (189), Expect(2) = 1e-024
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +3 / -1
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
I D ++D VR+ Y + +I+ LK AID GA V G+F WSLLDNFEW GYT R+GIVYVD
Sbjct: 543 IADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVD 367
Score = 43.2 bits (88), Expect(2) = 1e-024
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3 / -1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P G+ + ++K +YGNP + ++ENG+
Sbjct: 660 WLYIVPWGMNKAVTYVKERYGNPTMILSENGM 565
>gb|CK124362.1|CK124362 BES1824108i03 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I038 5-PRIME, mRNA sequence
Length = 655
Score = 89.5 bits (189), Expect(2) = 1e-024
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +3 / +1
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
I D ++D VR+ Y + +I+ LK AID GA V G+F WSLLDNFEW GYT R+GIVYVD
Sbjct: 247 IADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVD 423
Score = 43.2 bits (88), Expect(2) = 1e-024
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P G+ + ++K +YGNP + ++ENG+
Sbjct: 130 WLYIVPWGMNKAVTYVKERYGNPTMILSENGM 225
>gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ002_J07 5', mRNA sequence
Length = 642
Score = 89.5 bits (189), Expect(2) = 1e-024
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +3 / +3
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
I D ++D VR+ Y + +I+ LK AID GA V G+F WSLLDNFEW GYT R+GIVYVD
Sbjct: 312 IADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVD 488
Score = 43.2 bits (88), Expect(2) = 1e-024
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3 / +3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P G+ + ++K +YGNP + ++ENG+
Sbjct: 195 WLYIVPWGMNKAVTYVKERYGNPTMILSENGM 290
>gb|BE601804.3|BE601804 HVSMEh0099J17f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099J17f, mRNA sequence
Length = 627
Score = 89.5 bits (189), Expect(2) = 1e-024
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +3 / +2
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
I D ++D VR+ Y + +I+ LK AID GA V G+F WSLLDNFEW GYT R+GIVYVD
Sbjct: 128 IADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVD 304
Score = 43.2 bits (88), Expect(2) = 1e-024
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P G+ + ++K +YGNP + ++ENG+
Sbjct: 11 WLYIVPWGMNKAVTYVKERYGNPTMILSENGM 106
>gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. vulgare cDNA clone HF12O16
5-PRIME, mRNA sequence
Length = 615
Score = 89.5 bits (189), Expect(2) = 1e-024
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +3 / +1
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
I D ++D VR+ Y + +I+ LK AID GA V G+F WSLLDNFEW GYT R+GIVYVD
Sbjct: 322 IADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVD 498
Score = 43.2 bits (88), Expect(2) = 1e-024
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P G+ + ++K +YGNP + ++ENG+
Sbjct: 205 WLYIVPWGMNKAVTYVKERYGNPTMILSENGM 300
>gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. vulgare cDNA clone HT02B16
5-PRIME, mRNA sequence
Length = 611
Score = 89.5 bits (189), Expect(2) = 1e-024
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +3 / +1
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
I D ++D VR+ Y + +I+ LK AID GA V G+F WSLLDNFEW GYT R+GIVYVD
Sbjct: 196 IADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVD 372
Score = 43.2 bits (88), Expect(2) = 1e-024
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P G+ + ++K +YGNP + ++ENG+
Sbjct: 79 WLYIVPWGMNKAVTYVKERYGNPTMILSENGM 174
>gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. vulgare cDNA clone HF04E16
5-PRIME, mRNA sequence
Length = 590
Score = 89.5 bits (189), Expect(2) = 1e-024
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +3 / +2
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
I D ++D VR+ Y + +I+ LK AID GA V G+F WSLLDNFEW GYT R+GIVYVD
Sbjct: 278 IADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVD 454
Score = 43.2 bits (88), Expect(2) = 1e-024
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P G+ + ++K +YGNP + ++ENG+
Sbjct: 161 WLYIVPWGMNKAVTYVKERYGNPTMILSENGM 256
>gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025H09f, mRNA sequence
Length = 565
Score = 89.5 bits (189), Expect(2) = 1e-024
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +3 / +1
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
I D ++D VR+ Y + +I+ LK AID GA V G+F WSLLDNFEW GYT R+GIVYVD
Sbjct: 205 IADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVD 381
Score = 43.2 bits (88), Expect(2) = 1e-024
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P G+ + ++K +YGNP + ++ENG+
Sbjct: 88 WLYIVPWGMNKAVTYVKERYGNPTMILSENGM 183
>gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099K11f, mRNA sequence
Length = 503
Score = 89.5 bits (189), Expect(2) = 1e-024
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +3 / +1
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
I D ++D VR+ Y + +I+ LK AID GA V G+F WSLLDNFEW GYT R+GIVYVD
Sbjct: 220 IADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVD 396
Score = 43.2 bits (88), Expect(2) = 1e-024
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P G+ + ++K +YGNP + ++ENG+
Sbjct: 103 WLYIVPWGMNKAVTYVKERYGNPTMILSENGM 198
>gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 3', mRNA sequence
Length = 714
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -3
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 385 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 221
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 514 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 419
>gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 3', mRNA sequence
Length = 712
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -2
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 381 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 217
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 510 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 415
>gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 3', mRNA sequence
Length = 691
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -1
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 364 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 200
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 493 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 398
>gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 3', mRNA sequence
Length = 688
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -3
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 395 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 231
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 524 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 429
>gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 3', mRNA sequence
Length = 688
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -1
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 364 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 200
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 493 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 398
>gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 3', mRNA sequence
Length = 684
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -1
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 390 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 226
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 519 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 424
>gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 3', mRNA sequence
Length = 673
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -1
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 376 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 212
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 505 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 410
>gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 3', mRNA sequence
Length = 670
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -2
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 363 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 199
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 492 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 397
>gb|BU977487.1|BU977487 HA11I05r HA Hordeum vulgare subsp. vulgare cDNA clone HA11I05
5-PRIME, mRNA sequence
Length = 655
Score = 82.2 bits (173), Expect(2) = 2e-024
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +3 / +1
Query: 141 LPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYV 320
LPIK+AL D R++Y +H+ L AI +++G+FTW+ +D FEW GY +R+G++Y+
Sbjct: 385 LPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRFGLIYI 564
Query: 321 DR 326
DR
Sbjct: 565 DR 570
Score = 49.6 bits (102), Expect(2) = 2e-024
Identities = 14/42 (33%), Positives = 29/42 (69%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPL 143
++++YP G+ +++++ K +Y NP VY+ ENGI + + P+
Sbjct: 268 FLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEGNNSSLPI 393
>gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31o15 3', mRNA sequence
Length = 653
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -1
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 359 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 195
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 488 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 393
>gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06L21
3-PRIME, mRNA sequence
Length = 642
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -3
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 385 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 221
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 514 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 419
>gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 3', mRNA sequence
Length = 632
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -2
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 364 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 200
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 493 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 398
>gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 3', mRNA sequence
Length = 629
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -3
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 384 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 220
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 513 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 418
>gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 3', mRNA sequence
Length = 629
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -3
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 390 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 226
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 519 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 424
>gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4d02 3', mRNA sequence
Length = 621
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -3
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 382 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 218
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 511 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 416
>gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C14
5-PRIME, mRNA sequence
Length = 608
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / +3
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 201 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 365
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 72 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 167
>gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. vulgare cDNA clone HB22E11
5-PRIME, mRNA sequence
Length = 591
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / +1
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 382 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 546
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 253 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 348
>gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 3', mRNA sequence
Length = 586
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -1
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 385 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 221
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 514 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 419
>gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
5-PRIME, mRNA sequence
Length = 578
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / +3
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 408 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 572
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 279 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 374
>gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 5', mRNA sequence
Length = 573
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / +3
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 159 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 323
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 30 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 125
>gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
3-PRIME, mRNA sequence
Length = 561
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -1
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 405 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 241
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 534 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 439
>gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 3', mRNA sequence
Length = 537
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -3
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 391 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 227
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 520 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 425
>gb|BU968461.1|BU968461 HB07J14r BC Hordeum vulgare subsp. vulgare cDNA clone HB07J14
5-PRIME, mRNA sequence
Length = 523
Score = 82.2 bits (173), Expect(2) = 2e-024
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +3 / +2
Query: 141 LPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYV 320
LPIK+AL D R++Y +H+ L AI +++G+FTW+ +D FEW GY +R+G++Y+
Sbjct: 167 LPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRFGLIYI 346
Query: 321 DR 326
DR
Sbjct: 347 DR 352
Score = 49.6 bits (102), Expect(2) = 2e-024
Identities = 14/42 (33%), Positives = 29/42 (69%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPL 143
++++YP G+ +++++ K +Y NP VY+ ENGI + + P+
Sbjct: 50 FLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEGNNSSLPI 175
>gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37p13 3', mRNA sequence
Length = 523
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / -1
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 364 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 200
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / -1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 493 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 398
>gb|BU968389.1|BU968389 HB07F20r BC Hordeum vulgare subsp. vulgare cDNA clone HB07F20
5-PRIME, mRNA sequence
Length = 514
Score = 82.2 bits (173), Expect(2) = 2e-024
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +3 / +2
Query: 141 LPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYV 320
LPIK+AL D R++Y +H+ L AI +++G+FTW+ +D FEW GY +R+G++Y+
Sbjct: 167 LPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRFGLIYI 346
Query: 321 DR 326
DR
Sbjct: 347 DR 352
Score = 49.6 bits (102), Expect(2) = 2e-024
Identities = 14/42 (33%), Positives = 29/42 (69%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPL 143
++++YP G+ +++++ K +Y NP VY+ ENGI + + P+
Sbjct: 50 FLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEGNNSSLPI 175
>gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005D04f, mRNA sequence
Length = 508
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / +1
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 301 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 465
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 172 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 267
>gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_L04 5', mRNA sequence
Length = 487
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / +2
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 182 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 346
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 53 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 148
>gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM020cG.09, mRNA sequence
Length = 1023
Score = 81.3 bits (171), Expect(2) = 3e-024
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3 / +1
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 535 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSXKFGIVYVD 699
Score = 50.1 bits (103), Expect(2) = 3e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 406 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 501
>gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_O09 5', mRNA sequence
Length = 455
Score = 80.3 bits (169), Expect(2) = 5e-024
Identities = 30/55 (54%), Positives = 42/55 (76%)
Frame = +3 / +3
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S L +AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 150 LRDTTRVRFYRSYLSELNNAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 314
Score = 50.1 bits (103), Expect(2) = 5e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 21 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 116
>gb|BE454083.2|BE454083 HVSMEh0080E16f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0080E16f, mRNA sequence
Length = 713
Score = 86.8 bits (183), Expect(2) = 7e-024
Identities = 35/58 (60%), Positives = 43/58 (74%)
Frame = +3 / +2
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYV 320
I D ++D VR+ Y + +I+ LK AID GA V G+F WSLLDNFEW GYT R+GIVYV
Sbjct: 146 IADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYV 319
Score = 43.2 bits (88), Expect(2) = 7e-024
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P G+ + ++K +YGNP + ++ENG+
Sbjct: 29 WLYIVPWGMNKAVTYVKERYGNPTMILSENGM 124
>gb|BJ467618.1|BJ467618 BJ467618 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29b06 3', mRNA sequence
Length = 709
Score = 87.2 bits (184), Expect(2) = 7e-024
Identities = 36/59 (61%), Positives = 43/59 (72%)
Frame = +3 / -2
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
I D + D VR+ Y + +I+ LK AID GA V G+F WSLLDNFEW GYT R+GIVYVD
Sbjct: 387 ITDGVQDTVRVRYYRDYITELKKAIDDGARVIGYFAWSLLDNFEWRLGYTARFGIVYVD 211
Score = 42.8 bits (87), Expect(2) = 7e-024
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3 / -2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P G+ + ++K +YGNP + + ENG+
Sbjct: 504 WLYIVPWGINKAVTYVKERYGNPTMILAENGM 409
>gb|BM373002.2|BM373002 EBma04_SQ002_L05_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_L05 5', mRNA sequence
Length = 616
Score = 80.3 bits (169), Expect(2) = 7e-024
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = +3 / +1
Query: 141 LPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYV 320
LPIK+AL D R++Y +H+ L AI +++G+FTW+ +D FEW GY +R G++Y+
Sbjct: 403 LPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRXGLIYI 582
Query: 321 DR 326
DR
Sbjct: 583 DR 588
Score = 49.6 bits (102), Expect(2) = 7e-024
Identities = 14/42 (33%), Positives = 29/42 (69%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPL 143
++++YP G+ +++++ K +Y NP VY+ ENGI + + P+
Sbjct: 286 FLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEGNNSSLPI 411
>gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8l06 5', mRNA sequence
Length = 474
Score = 79.9 bits (168), Expect(2) = 7e-024
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = +3 / +1
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F W LLDNFEW +GY+ ++GIVYVD
Sbjct: 295 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWXLLDNFEWMSGYSSKFGIVYVD 459
Score = 50.1 bits (103), Expect(2) = 7e-024
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 166 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 261
>gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08J03V 5', mRNA sequence
Length = 545
Score = 70.7 bits (148), Expect(2) = 1e-023
Identities = 26/49 (53%), Positives = 35/49 (71%)
Frame = +3 / +2
Query: 228 GADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLK 374
G DVRG+F WSLLDN+EW+AGY+ R+G+ +VD + KR K S + K
Sbjct: 347 GCDVRGYFAWSLLDNWEWAAGYSSRFGLYFVDYNDKLKRYPKSSVQXFK 493
Score = 58.8 bits (122), Expect(2) = 1e-023
Identities = 16/34 (47%), Positives = 28/34 (82%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGD 119
W+Y+ P G++ ++ ++KN+Y +PP+YITENG+ D
Sbjct: 140 WLYIVPRGMRSLMNYVKNRYNSPPIYITENGMDD 241
>gb|BE601810.2|BE601810 HVSMEh0099K03f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099K03f, mRNA sequence
Length = 499
Score = 86.3 bits (182), Expect(2) = 2e-023
Identities = 35/59 (59%), Positives = 43/59 (72%)
Frame = +3 / +3
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
I D ++D VR+ Y + +I+ LK AID GA V G+F WSLLDNFEW GYT R+GI YVD
Sbjct: 219 IADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIDYVD 395
Score = 42.3 bits (86), Expect(2) = 2e-023
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3 / +3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P G+ ++K +YGNP + ++ENG+
Sbjct: 102 WLYIVPWGMNKAATYVKERYGNPTMILSENGM 197
>gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_D19 5', mRNA sequence
Length = 480
Score = 78.5 bits (165), Expect(2) = 2e-023
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = +3 / +1
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S LK AID GA+V G+F WSLL NFEW +GY+ ++GIVYVD
Sbjct: 304 LRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLXNFEWMSGYSSKFGIVYVD 468
Score = 50.1 bits (103), Expect(2) = 2e-023
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y+ P+G+ + ++ KYGNPP+ ITENG+
Sbjct: 174 WLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 269
>gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_O07 5', mRNA sequence
Length = 447
Score = 79.4 bits (167), Expect(2) = 3e-023
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = +3 / +3
Query: 159 LNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
L D R+ + + ++S L AID GA+V G+F WSLLDNFEW +GY+ ++GIVYVD
Sbjct: 147 LRDTTRVRFYRSYLSELNKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 311
Score = 48.3 bits (99), Expect(2) = 3e-023
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3 / +3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENG 110
W+Y+ P+G+ + ++ KYGNPP+ ITENG
Sbjct: 21 WLYIVPSGMYGCVHYLIQKYGNPPIVITENG 113
>gb|BU995809.1|BU995809 HM11G24r HM Hordeum vulgare subsp. vulgare cDNA clone HM11G24
5-PRIME, mRNA sequence
Length = 630
Score = 85.4 bits (180), Expect(2) = 6e-023
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +3 / +2
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
+KD +ND R++YLQ +++ + A+ GA+VRG+F WSL+DNFEW G+T R+G+ YVD
Sbjct: 296 MKDLINDVGRVNYLQGYLTCISSAVRRGANVRGYFVWSLMDNFEWGFGFTVRFGLYYVD 472
Score = 41.4 bits (84), Expect(2) = 6e-023
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3 / +2
Query: 15 PWIYMYPNGLKDILMFIKNKYGNPPVYITENG 110
P Y P G++ I+ ++ +Y N PVY+TENG
Sbjct: 176 PGYYDVPEGMELIVKYVNQRYENAPVYVTENG 271
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 305,637,625
Number of Sequences: 312970
Number of extensions: 4954968
Number of successful extensions: 85306
Number of sequences better than 1.0e-020: 98
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6574589895
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)