TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7987759.3.1
(658 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI960501.1|BI960501 HVSMEn0024N01f Hordeum vulgare rachi... 131 6e-055
gb|BI957606.1|BI957606 HVSMEn0010F15f Hordeum vulgare rachi... 131 6e-055
gb|BI958645.1|BI958645 HVSMEn0016A21f Hordeum vulgare rachi... 131 6e-055
gb|BG344915.2|BG344915 HVSMEg0016N12f Hordeum vulgare pre-a... 131 7e-054
gb|BG343272.2|BG343272 HVSMEg0005E13f Hordeum vulgare pre-a... 131 1e-053
gb|BI959987.1|BI959987 HVSMEn0022M02f Hordeum vulgare rachi... 124 1e-051
gb|BI936373.1|BI936373 HVSMEa0019K09f Hordeum vulgare seedl... 97 5e-042
gb|BI957639.1|BI957639 HVSMEn0010H12f Hordeum vulgare rachi... 67 2e-031
emb|X77467.1|HVOMET H.vulgare L. mRNA for flavonoid 7-O-met... 105 8e-031
gb|BI949226.1|BI949226 HVSMEl0012O03f Hordeum vulgare spike... 105 1e-029
gb|BG310228.1|BG310228 HVSMEc0016J04f Hordeum vulgare seedl... 99 4e-029
gb|BI956571.1|BI956571 HVSMEn0004D06f Hordeum vulgare rachi... 96 1e-028
gb|BI949030.1|BI949030 HVSMEl0012B14f Hordeum vulgare spike... 87 2e-028
gb|BF253443.2|BF253443 HVSMEf0001G23f Hordeum vulgare seedl... 94 7e-028
gb|BI949033.1|BI949033 HVSMEl0012B18f Hordeum vulgare spike... 98 4e-027
gb|BF265921.2|BF265921 HV_CEa0013K24f Hordeum vulgare seedl... 99 5e-027
gb|BI951913.1|BI951913 HVSMEm0003K22f Hordeum vulgare green... 91 8e-027
gb|BF621230.2|BF621230 HVSMEa0006C03f Hordeum vulgare seedl... 95 1e-026
gb|CV054774.1|CV054774 BNEL113b6 Barley EST endosperm libra... 92 2e-026
gb|BI957257.1|BI957257 HVSMEn0008H11f Hordeum vulgare rachi... 118 3e-026
gb|AW982411.2|AW982411 HVSMEg0003D05f Hordeum vulgare pre-a... 96 4e-026
gb|BF263474.2|BF263474 HV_CEa0006N11f Hordeum vulgare seedl... 100 1e-025
gb|AV836271.1|AV836271 AV836271 K. Sato unpublished cDNA li... 88 1e-025
gb|CB879287.1|CB879287 HP11K01T HP Hordeum vulgare subsp. v... 99 2e-025
gb|CB878690.1|CB878690 HP09H16T HP Hordeum vulgare subsp. v... 99 2e-025
gb|BG309537.1|BG309537 HVSMEc0010O12f Hordeum vulgare seedl... 98 3e-025
gb|BG417465.1|BG417465 HVSMEk0017L14f Hordeum vulgare testa... 85 2e-024
gb|BI949816.1|BI949816 HVSMEl0016D14f Hordeum vulgare spike... 94 2e-024
gb|BI950884.1|BI950884 HVSMEl0023I12f Hordeum vulgare spike... 88 3e-024
gb|BF257709.1|BF257709 HVSMEf0013K13f Hordeum vulgare seedl... 107 5e-023
gb|BE215985.1|BE215985 HV_CEb0009A08f Hordeum vulgare seedl... 101 3e-021
>gb|BI960501.1|BI960501 HVSMEn0024N01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024N01f, mRNA sequence
Length = 660
Score = 131 bits (280), Expect(3) = 6e-055
Identities = 55/79 (69%), Positives = 64/79 (81%)
Frame = +2 / +2
Query: 104 QVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPC 283
Q LDA+L+LW+ +FGYVKSMALK+ LDLGI DAIH HGG+AT+ QI TLHPSK C
Sbjct: 53 QGLLDAQLELWHISFGYVKSMALKSCLDLGIADAIHHHGGAATLSQIGAVATLHPSKICC 232
Query: 284 LRRLMRVLTVTGVFGTQEP 340
LRRLMRVLTV+GVF Q+P
Sbjct: 233 LRRLMRVLTVSGVFSVQQP 289
Score = 98.2 bits (208), Expect(2) = 2e-033
Identities = 41/63 (65%), Positives = 44/63 (69%)
Frame = -2 / -1
Query: 333 WVPKTPVTVSTRMRRRRHGVLDGWSVILVTICGMVAEPPCWWMASGMPRSSAALSAMDLT 154
W KTP TVSTR+RRRR +LDGWSV I VA PP WWMAS MPRS SA+DLT
Sbjct: 282 WTLKTPETVSTRIRRRRQQILDGWSVATAPIWERVAAPPWWWMASAMPRSKQDFSAIDLT 103
Query: 153 *PK 145
*PK
Sbjct: 102 *PK 94
Score = 97.7 bits (207), Expect(2) = 1e-022
Identities = 46/81 (56%), Positives = 57/81 (70%)
Frame = -1 / -3
Query: 337 LLGAEDAGDGEHAHEAPQAWCLGRVERDPGDYLWDGSRAAVLVDGIGYAEVERGLERHGL 158
LL AEDAGD EH H+A QA LGRVER L +GS A++VDG+G AEV+ GL H
Sbjct: 286 LLDAEDAGDSEHTHKAAQAADLGRVERSYSSNLGEGSGTAMVVDGVGDAEVQAGL*CH*F 107
Query: 157 DVAEGVVPQLELGIQRHLLFA 95
DVA+G VP+LEL I++ L+ A
Sbjct: 106 DVAKGDVPELELSIEQTLIGA 44
Score = 96.4 bits (204), Expect(3) = 6e-055
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 426 NVNPLMKVMLRPIFVSSFLDLRGWFQHEMPDPSPFNVTHGRDIWELDAHDAGFSRLFDAG 605
N+ P++ + L+P VSSF +L WFQH++P+P F + HG+ WE+ H+A F+ + +
Sbjct: 371 NIVPVINLQLQPNIVSSFSELGAWFQHKLPEPDLFKLKHGKTFWEIAHHNAAFNTIVNDA 550
Query: 606 MVADSGFIMNVVVRECG 656
M +DS F+M++ +RECG
Sbjct: 551 MASDSRFLMDIAIRECG 601
Score = 64.3 bits (134), Expect(2) = 2e-033
Identities = 30/78 (38%), Positives = 37/78 (47%)
Frame = -1 / -1
Query: 658 LPHSLTTTFMMKPLSATMPASKSLLKPASWASSSHMSRPCVTLKGDGSGISCWNHPRRSR 479
LPHSL M LS M + +L A W + S PC LK GSG CWN S
Sbjct: 603 LPHSLMAMSMRNRLSEAMASLTMVLNAALWWAISQKVLPCFNLKRSGSGSLCWNQAPSSE 424
Query: 478 KDDTKMGRSITFIKGFTF 425
K++T +G S + G F
Sbjct: 423 KEETMLGWSCRLMTGTMF 370
Score = 29.9 bits (59), Expect(2) = 1e-022
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3 / -3
Query: 656 AALPDHDVHDEAAVRDH 606
AALPD DVH+E A+ H
Sbjct: 601 AALPDGDVHEEPAIGGH 551
Score = 25.4 bits (49), Expect(3) = 6e-055
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / +2
Query: 368 ELVYTLTPASRLLV 409
ELVYTLT S LLV
Sbjct: 314 ELVYTLTAVSHLLV 355
>gb|BI957606.1|BI957606 HVSMEn0010F15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F15f, mRNA sequence
Length = 648
Score = 131 bits (280), Expect(3) = 6e-055
Identities = 55/79 (69%), Positives = 64/79 (81%)
Frame = +2 / +3
Query: 104 QVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPC 283
Q LDA+L+LW+ +FGYVKSMALK+ LDLGI DAIH HGG+AT+ QI TLHPSK C
Sbjct: 54 QGLLDAQLELWHISFGYVKSMALKSCLDLGIADAIHHHGGAATLSQIGAVATLHPSKICC 233
Query: 284 LRRLMRVLTVTGVFGTQEP 340
LRRLMRVLTV+GVF Q+P
Sbjct: 234 LRRLMRVLTVSGVFSVQQP 290
Score = 98.2 bits (208), Expect(2) = 2e-033
Identities = 41/63 (65%), Positives = 44/63 (69%)
Frame = -2 / -3
Query: 333 WVPKTPVTVSTRMRRRRHGVLDGWSVILVTICGMVAEPPCWWMASGMPRSSAALSAMDLT 154
W KTP TVSTR+RRRR +LDGWSV I VA PP WWMAS MPRS SA+DLT
Sbjct: 283 WTLKTPETVSTRIRRRRQQILDGWSVATAPIWERVAAPPWWWMASAMPRSKQDFSAIDLT 104
Query: 153 *PK 145
*PK
Sbjct: 103 *PK 95
Score = 97.7 bits (207), Expect(2) = 1e-022
Identities = 46/81 (56%), Positives = 57/81 (70%)
Frame = -1 / -2
Query: 337 LLGAEDAGDGEHAHEAPQAWCLGRVERDPGDYLWDGSRAAVLVDGIGYAEVERGLERHGL 158
LL AEDAGD EH H+A QA LGRVER L +GS A++VDG+G AEV+ GL H
Sbjct: 287 LLDAEDAGDSEHTHKAAQAADLGRVERSYSSNLGEGSGTAMVVDGVGDAEVQAGL*CH*F 108
Query: 157 DVAEGVVPQLELGIQRHLLFA 95
DVA+G VP+LEL I++ L+ A
Sbjct: 107 DVAKGDVPELELSIEQTLIGA 45
Score = 96.4 bits (204), Expect(3) = 6e-055
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +3 / +3
Query: 426 NVNPLMKVMLRPIFVSSFLDLRGWFQHEMPDPSPFNVTHGRDIWELDAHDAGFSRLFDAG 605
N+ P++ + L+P VSSF +L WFQH++P+P F + HG+ WE+ H+A F+ + +
Sbjct: 372 NIVPVINLQLQPNIVSSFSELGAWFQHKLPEPDLFKLKHGKTFWEIAHHNAAFNTIVNDA 551
Query: 606 MVADSGFIMNVVVRECG 656
M +DS F+M++ +RECG
Sbjct: 552 MASDSRFLMDIAIRECG 602
Score = 64.3 bits (134), Expect(2) = 2e-033
Identities = 30/78 (38%), Positives = 37/78 (47%)
Frame = -1 / -3
Query: 658 LPHSLTTTFMMKPLSATMPASKSLLKPASWASSSHMSRPCVTLKGDGSGISCWNHPRRSR 479
LPHSL M LS M + +L A W + S PC LK GSG CWN S
Sbjct: 604 LPHSLMAMSMRNRLSEAMASLTMVLNAALWWAISQKVLPCFNLKRSGSGSLCWNQAPSSE 425
Query: 478 KDDTKMGRSITFIKGFTF 425
K++T +G S + G F
Sbjct: 424 KEETMLGWSCRLMTGTMF 371
Score = 29.9 bits (59), Expect(2) = 1e-022
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3 / -2
Query: 656 AALPDHDVHDEAAVRDH 606
AALPD DVH+E A+ H
Sbjct: 602 AALPDGDVHEEPAIGGH 552
Score = 25.4 bits (49), Expect(3) = 6e-055
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / +3
Query: 368 ELVYTLTPASRLLV 409
ELVYTLT S LLV
Sbjct: 315 ELVYTLTAVSHLLV 356
>gb|BI958645.1|BI958645 HVSMEn0016A21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016A21f, mRNA sequence
Length = 624
Score = 131 bits (280), Expect(3) = 6e-055
Identities = 55/79 (69%), Positives = 64/79 (81%)
Frame = +2 / +1
Query: 104 QVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPC 283
Q LDA+L+LW+ +FGYVKSMALK+ LDLGI DAIH HGG+AT+ QI TLHPSK C
Sbjct: 61 QGLLDAQLELWHISFGYVKSMALKSCLDLGIADAIHHHGGAATLSQIGAVATLHPSKICC 240
Query: 284 LRRLMRVLTVTGVFGTQEP 340
LRRLMRVLTV+GVF Q+P
Sbjct: 241 LRRLMRVLTVSGVFSVQQP 297
Score = 98.2 bits (208), Expect(2) = 2e-033
Identities = 41/63 (65%), Positives = 44/63 (69%)
Frame = -2 / -2
Query: 333 WVPKTPVTVSTRMRRRRHGVLDGWSVILVTICGMVAEPPCWWMASGMPRSSAALSAMDLT 154
W KTP TVSTR+RRRR +LDGWSV I VA PP WWMAS MPRS SA+DLT
Sbjct: 290 WTLKTPETVSTRIRRRRQQILDGWSVATAPIWERVAAPPWWWMASAMPRSKQDFSAIDLT 111
Query: 153 *PK 145
*PK
Sbjct: 110 *PK 102
Score = 97.7 bits (207), Expect(2) = 1e-022
Identities = 46/81 (56%), Positives = 57/81 (70%)
Frame = -1 / -1
Query: 337 LLGAEDAGDGEHAHEAPQAWCLGRVERDPGDYLWDGSRAAVLVDGIGYAEVERGLERHGL 158
LL AEDAGD EH H+A QA LGRVER L +GS A++VDG+G AEV+ GL H
Sbjct: 294 LLDAEDAGDSEHTHKAAQAADLGRVERSYSSNLGEGSGTAMVVDGVGDAEVQAGL*CH*F 115
Query: 157 DVAEGVVPQLELGIQRHLLFA 95
DVA+G VP+LEL I++ L+ A
Sbjct: 114 DVAKGDVPELELSIEQTLIGA 52
Score = 96.4 bits (204), Expect(3) = 6e-055
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +3 / +1
Query: 426 NVNPLMKVMLRPIFVSSFLDLRGWFQHEMPDPSPFNVTHGRDIWELDAHDAGFSRLFDAG 605
N+ P++ + L+P VSSF +L WFQH++P+P F + HG+ WE+ H+A F+ + +
Sbjct: 379 NIVPVINLQLQPNIVSSFSELGAWFQHKLPEPDLFKLKHGKTFWEIAHHNAAFNTIVNDA 558
Query: 606 MVADSGFIMNVVVRECG 656
M +DS F+M++ +RECG
Sbjct: 559 MASDSRFLMDIAIRECG 609
Score = 64.3 bits (134), Expect(2) = 2e-033
Identities = 30/78 (38%), Positives = 37/78 (47%)
Frame = -1 / -2
Query: 658 LPHSLTTTFMMKPLSATMPASKSLLKPASWASSSHMSRPCVTLKGDGSGISCWNHPRRSR 479
LPHSL M LS M + +L A W + S PC LK GSG CWN S
Sbjct: 611 LPHSLMAMSMRNRLSEAMASLTMVLNAALWWAISQKVLPCFNLKRSGSGSLCWNQAPSSE 432
Query: 478 KDDTKMGRSITFIKGFTF 425
K++T +G S + G F
Sbjct: 431 KEETMLGWSCRLMTGTMF 378
Score = 29.9 bits (59), Expect(2) = 1e-022
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3 / -1
Query: 656 AALPDHDVHDEAAVRDH 606
AALPD DVH+E A+ H
Sbjct: 609 AALPDGDVHEEPAIGGH 559
Score = 25.4 bits (49), Expect(3) = 6e-055
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / +1
Query: 368 ELVYTLTPASRLLV 409
ELVYTLT S LLV
Sbjct: 322 ELVYTLTAVSHLLV 363
>gb|BG344915.2|BG344915 HVSMEg0016N12f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016N12f, mRNA sequence
Length = 635
Score = 131 bits (280), Expect(3) = 7e-054
Identities = 55/79 (69%), Positives = 64/79 (81%)
Frame = +2 / +3
Query: 104 QVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPC 283
Q LDA+L+LW+ +FGYVKSMALK+ LDLGI DAIH HGG+AT+ QI TLHPSK C
Sbjct: 60 QGLLDAQLELWHISFGYVKSMALKSCLDLGIADAIHHHGGAATLSQIGAVATLHPSKICC 239
Query: 284 LRRLMRVLTVTGVFGTQEP 340
LRRLMRVLTV+GVF Q+P
Sbjct: 240 LRRLMRVLTVSGVFSVQQP 296
Score = 98.2 bits (208), Expect(2) = 6e-033
Identities = 41/63 (65%), Positives = 44/63 (69%)
Frame = -2 / -2
Query: 333 WVPKTPVTVSTRMRRRRHGVLDGWSVILVTICGMVAEPPCWWMASGMPRSSAALSAMDLT 154
W KTP TVSTR+RRRR +LDGWSV I VA PP WWMAS MPRS SA+DLT
Sbjct: 289 WTLKTPETVSTRIRRRRQQILDGWSVATAPIWERVAAPPWWWMASAMPRSKQDFSAIDLT 110
Query: 153 *PK 145
*PK
Sbjct: 109 *PK 101
Score = 97.7 bits (207), Expect(2) = 1e-021
Identities = 46/81 (56%), Positives = 57/81 (70%)
Frame = -1 / -1
Query: 337 LLGAEDAGDGEHAHEAPQAWCLGRVERDPGDYLWDGSRAAVLVDGIGYAEVERGLERHGL 158
LL AEDAGD EH H+A QA LGRVER L +GS A++VDG+G AEV+ GL H
Sbjct: 293 LLDAEDAGDSEHTHKAAQAADLGRVERSYSSNLGEGSGTAMVVDGVGDAEVQAGL*CH*F 114
Query: 157 DVAEGVVPQLELGIQRHLLFA 95
DVA+G VP+LEL I++ L+ A
Sbjct: 113 DVAKGDVPELELSIEQTLIGA 51
Score = 92.7 bits (196), Expect(3) = 7e-054
Identities = 31/77 (40%), Positives = 51/77 (66%)
Frame = +3 / +3
Query: 426 NVNPLMKVMLRPIFVSSFLDLRGWFQHEMPDPSPFNVTHGRDIWELDAHDAGFSRLFDAG 605
N+ P++ + L+P VSSF +L WFQH++P+P F + HG+ WE+ H+A F+ + +
Sbjct: 378 NIVPVINLQLQPNIVSSFSELGAWFQHKLPEPDLFKLKHGKTFWEIAHHNAAFNTIVNDA 557
Query: 606 MVADSGFIMNVVVRECG 656
M DS F+M++ + ECG
Sbjct: 558 MAXDSRFLMDIXIXECG 608
Score = 62.5 bits (130), Expect(2) = 6e-033
Identities = 29/78 (37%), Positives = 36/78 (46%)
Frame = -1 / -2
Query: 658 LPHSLTTTFMMKPLSATMPASKSLLKPASWASSSHMSRPCVTLKGDGSGISCWNHPRRSR 479
LPHS M LS M + +L A W + S PC LK GSG CWN S
Sbjct: 610 LPHSXMXMSMRNRLSXAMASLTMVLNAALWWAISQKVLPCFNLKRSGSGSLCWNQAPSSE 431
Query: 478 KDDTKMGRSITFIKGFTF 425
K++T +G S + G F
Sbjct: 430 KEETMLGWSCRLMTGTMF 377
Score = 26.7 bits (52), Expect(2) = 1e-021
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3 / -1
Query: 656 AALPDHDVHDEAAVRDH 606
AAL D DVH+E A+ H
Sbjct: 608 AALXDXDVHEEPAIXGH 558
Score = 25.4 bits (49), Expect(3) = 7e-054
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / +3
Query: 368 ELVYTLTPASRLLV 409
ELVYTLT S LLV
Sbjct: 321 ELVYTLTAVSHLLV 362
>gb|BG343272.2|BG343272 HVSMEg0005E13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005E13f, mRNA sequence
Length = 992
Score = 131 bits (280), Expect(3) = 1e-053
Identities = 55/79 (69%), Positives = 64/79 (81%)
Frame = +2 / +2
Query: 104 QVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPC 283
Q LDA+L+LW+ +FGYVKSMALK+ LDLGI DAIH HGG+AT+ QI TLHPSK C
Sbjct: 59 QGLLDAQLELWHISFGYVKSMALKSCLDLGIADAIHHHGGAATLSQIGAVATLHPSKICC 238
Query: 284 LRRLMRVLTVTGVFGTQEP 340
LRRLMRVLTV+GVF Q+P
Sbjct: 239 LRRLMRVLTVSGVFSVQQP 295
Score = 98.2 bits (208), Expect(2) = 2e-033
Identities = 41/63 (65%), Positives = 44/63 (69%)
Frame = -2 / -3
Query: 333 WVPKTPVTVSTRMRRRRHGVLDGWSVILVTICGMVAEPPCWWMASGMPRSSAALSAMDLT 154
W KTP TVSTR+RRRR +LDGWSV I VA PP WWMAS MPRS SA+DLT
Sbjct: 288 WTLKTPETVSTRIRRRRQQILDGWSVATAPIWERVAAPPWWWMASAMPRSKQDFSAIDLT 109
Query: 153 *PK 145
*PK
Sbjct: 108 *PK 100
Score = 97.7 bits (207), Expect(2) = 1e-021
Identities = 46/81 (56%), Positives = 57/81 (70%)
Frame = -1 / -2
Query: 337 LLGAEDAGDGEHAHEAPQAWCLGRVERDPGDYLWDGSRAAVLVDGIGYAEVERGLERHGL 158
LL AEDAGD EH H+A QA LGRVER L +GS A++VDG+G AEV+ GL H
Sbjct: 292 LLDAEDAGDSEHTHKAAQAADLGRVERSYSSNLGEGSGTAMVVDGVGDAEVQAGL*CH*F 113
Query: 157 DVAEGVVPQLELGIQRHLLFA 95
DVA+G VP+LEL I++ L+ A
Sbjct: 112 DVAKGDVPELELSIEQTLIGA 50
Score = 91.8 bits (194), Expect(3) = 1e-053
Identities = 31/77 (40%), Positives = 51/77 (66%)
Frame = +3 / +2
Query: 426 NVNPLMKVMLRPIFVSSFLDLRGWFQHEMPDPSPFNVTHGRDIWELDAHDAGFSRLFDAG 605
N+ P++ + L+P VSSF +L WFQH++P+P F + HG WE+ H+A F+ + +
Sbjct: 377 NIVPVINLQLQPNIVSSFSELGAWFQHKLPEPDLFKLKHGXTFWEIAHHNAAFNTIVNDA 556
Query: 606 MVADSGFIMNVVVRECG 656
M +DS +M++ +RECG
Sbjct: 557 MASDSRXLMDIAIRECG 607
Score = 64.3 bits (134), Expect(2) = 2e-033
Identities = 30/78 (38%), Positives = 37/78 (47%)
Frame = -1 / -3
Query: 658 LPHSLTTTFMMKPLSATMPASKSLLKPASWASSSHMSRPCVTLKGDGSGISCWNHPRRSR 479
LPHSL M LS M + +L A W + S PC LK GSG CWN S
Sbjct: 609 LPHSLMAMSMRXRLSEAMASLTMVLNAALWWAISQKVXPCFNLKRSGSGSLCWNQAPSSE 430
Query: 478 KDDTKMGRSITFIKGFTF 425
K++T +G S + G F
Sbjct: 429 KEETMLGWSCRLMTGTMF 376
Score = 27.2 bits (53), Expect(2) = 1e-021
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3 / -2
Query: 656 AALPDHDVHDEAAVRDH 606
AALPD DVH+ A+ H
Sbjct: 607 AALPDGDVHEXPAIGGH 557
Score = 25.4 bits (49), Expect(3) = 1e-053
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / +2
Query: 368 ELVYTLTPASRLLV 409
ELVYTLT S LLV
Sbjct: 320 ELVYTLTAVSHLLV 361
>gb|BI959987.1|BI959987 HVSMEn0022M02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022M02f, mRNA sequence
Length = 629
Score = 124 bits (265), Expect(3) = 1e-051
Identities = 51/73 (69%), Positives = 60/73 (82%)
Frame = +2 / +3
Query: 122 ELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRRLMR 301
+L+LW+ +FGYVKSMALK+ LDLGI DAIH HGG+AT+ QI TLHPSK CLRRLMR
Sbjct: 72 QLELWHISFGYVKSMALKSCLDLGIADAIHHHGGAATLSQIGAVATLHPSKICCLRRLMR 251
Query: 302 VLTVTGVFGTQEP 340
VLTV+GVF Q+P
Sbjct: 252 VLTVSGVFSVQQP 290
Score = 98.2 bits (208), Expect(2) = 1e-032
Identities = 41/63 (65%), Positives = 44/63 (69%)
Frame = -2 / -2
Query: 333 WVPKTPVTVSTRMRRRRHGVLDGWSVILVTICGMVAEPPCWWMASGMPRSSAALSAMDLT 154
W KTP TVSTR+RRRR +LDGWSV I VA PP WWMAS MPRS SA+DLT
Sbjct: 283 WTLKTPETVSTRIRRRRQQILDGWSVATAPIWERVAAPPWWWMASAMPRSKQDFSAIDLT 104
Query: 153 *PK 145
*PK
Sbjct: 103 *PK 95
Score = 91.8 bits (194), Expect(3) = 1e-051
Identities = 31/77 (40%), Positives = 52/77 (67%)
Frame = +3 / +3
Query: 426 NVNPLMKVMLRPIFVSSFLDLRGWFQHEMPDPSPFNVTHGRDIWELDAHDAGFSRLFDAG 605
N+ P++ + L+P VSSF +L WFQH++P+P F + HG+ WE+ H+A F+ + +
Sbjct: 372 NIVPVINLQLQPNIVSSFSELGAWFQHKLPEPDLFKLKHGKTFWEIAHHNAAFNTIVNDP 551
Query: 606 MVADSGFIMNVVVRECG 656
M +DS F+M++ + ECG
Sbjct: 552 MASDSRFLMDIPITECG 602
Score = 61.6 bits (128), Expect(2) = 1e-032
Identities = 29/78 (37%), Positives = 37/78 (47%)
Frame = -1 / -2
Query: 658 LPHSLTTTFMMKPLSATMPASKSLLKPASWASSSHMSRPCVTLKGDGSGISCWNHPRRSR 479
LPHS+ M LS M + +L A W + S PC LK GSG CWN S
Sbjct: 604 LPHSVMGMSMRNRLSEAMGSLTMVLNAALWWAISQKVLPCFNLKRSGSGSLCWNQAPSSE 425
Query: 478 KDDTKMGRSITFIKGFTF 425
K++T +G S + G F
Sbjct: 424 KEETMLGWSCRLMTGTMF 371
Score = 25.4 bits (49), Expect(3) = 1e-051
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / +3
Query: 368 ELVYTLTPASRLLV 409
ELVYTLT S LLV
Sbjct: 315 ELVYTLTAVSHLLV 356
>gb|BI936373.1|BI936373 HVSMEa0019K09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0019K09f, mRNA sequence
Length = 651
Score = 97.3 bits (206), Expect(3) = 5e-042
Identities = 42/73 (57%), Positives = 54/73 (73%)
Frame = +2 / +1
Query: 116 DAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRRL 295
DAEL+LW TF Y+KSMALK+ALDL + DAI+ +GG T+ IVTR+T+H S LR +
Sbjct: 46 DAELELWTSTFSYIKSMALKSALDLRLADAINHNGGVVTLYDIVTRVTIHHS*IH*LRCV 225
Query: 296 MRVLTVTGVFGTQ 334
MRV+T+TGV Q
Sbjct: 226 MRVVTLTGVLSVQ 264
Score = 79.4 bits (167), Expect(3) = 5e-042
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = +3 / +1
Query: 426 NVNPLMKVMLRPIFVSSFLDLRGWFQHEMPDPSPFNVTHGRDIWELDAHDAGFSRLFDAG 605
N+ +M ++L PI ++ L + WF++ DPS F+ THG +W++ DA L + G
Sbjct: 343 NLTSMMAMLLNPIMLTQCLGIGDWFKYWQSDPSIFDQTHGEGLWKMAHRDATLDALINDG 522
Query: 606 MVADSGFIMNVVVRECG 656
MV D FIM++ V+ECG
Sbjct: 523 MVCDRRFIMDIDVKECG 573
Score = 73.5 bits (154), Expect(2) = 7e-023
Identities = 31/76 (40%), Positives = 50/76 (65%)
Frame = -1 / -1
Query: 337 LLGAEDAGDGEHAHEAPQAWCLGRVERDPGDYLWDGSRAAVLVDGIGYAEVERGLERHGL 158
+L A+ A + ++AH A Q+ LG V DPGDY+ + A++V+G+ +V+ L+RHGL
Sbjct: 267 MLNAQHARESDNAHYAAQSVYLGVVYGDPGDYVVERDDTAIVVNGVSKPQVQGRLKRHGL 88
Query: 157 DVAEGVVPQLELGIQR 110
V EG P+L+LG+ +
Sbjct: 87 YVREGAGPELKLGVSQ 40
Score = 53.3 bits (110), Expect(2) = 7e-023
Identities = 32/77 (41%), Positives = 35/77 (45%)
Frame = -3 / -1
Query: 653 ALPDHDVHDEAAVRDHXXXXXXXXXXXXXVQLPYVPPVRHIEGGRVRHLVLEPPAEVEEG 474
AL D DVHDEA V DH LP VR I+ RV VLEP A+ E
Sbjct: 570 ALFDVDVHDEAPVADHPVIDQRVQGGVSVGHLPQALAVRLIKDARV*LPVLEPVADPEAL 391
Query: 473 RHEDGAEHHFH*RVHVL 423
DG E H H R V+
Sbjct: 390 GEHDGIEQHGHHRSQVV 340
Score = 32.7 bits (65), Expect(3) = 5e-042
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +2 / +1
Query: 341 HDDGGGCDDELVYTLTPASRLLV 409
HD DDE Y LTPA RLLV
Sbjct: 265 HDQVMSTDDETTYALTPAYRLLV 333
>gb|BI957639.1|BI957639 HVSMEn0010H12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010H12f, mRNA sequence
Length = 652
Score = 66.6 bits (139), Expect(5) = 2e-031
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +2 / +2
Query: 218 GGSATIPQIVTRITLHPSKTPCLRRLMRVLTVTGVFGTQEP 340
GG+AT+ QI TLHPSK CLRRLMRVLTV+GVF Q+P
Sbjct: 155 GGAATLSQIGAVATLHPSKICCLRRLMRVLTVSGVFSVQQP 277
Score = 64.8 bits (135), Expect(5) = 2e-031
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = +3 / +2
Query: 426 NVNPLMKVMLRPIFVSSFLDLRGWFQHEMPDPSPFNVTHGRDIWELDAHDAGFSRLFDAG 605
N+ P+ + L+P VSSF +L W QH++P+P + HG+ WE+ H+A F+ + +
Sbjct: 359 NIVPVNNLQLQPNIVSSFSELGAWLQHKLPEPDLVKLKHGKTFWEITHHNAAFNTIVNDA 538
Query: 606 M 608
M
Sbjct: 539 M 541
Score = 26.7 bits (52), Expect(5) = 2e-031
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +3 / +1
Query: 618 SGFIMNVVVRECG 656
+GF+M++ +RECG
Sbjct: 553 AGFLMDIAIRECG 591
Score = 25.4 bits (49), Expect(5) = 2e-031
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / +2
Query: 368 ELVYTLTPASRLLV 409
ELVYTLT S LLV
Sbjct: 302 ELVYTLTAVSHLLV 343
Score = 24.0 bits (46), Expect(5) = 2e-031
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2 / +2
Query: 143 TFGYVKSMAL 172
+FGYVKSMAL
Sbjct: 89 SFGYVKSMAL 118
>emb|X77467.1|HVOMET H.vulgare L. mRNA for flavonoid 7-O-methyltransferase
Length = 1402
Score = 105 bits (223), Expect(3) = 8e-031
Identities = 41/99 (41%), Positives = 68/99 (68%)
Frame = +2 / +1
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L AE +L+ H+FGY+KSMAL++ + L IPD +H++GG+A++P++++ + +HP+K P L R
Sbjct: 142 LQAEAELFCHSFGYLKSMALQSVVKLRIPDVLHRYGGAASLPELLSTVPIHPNKLPYLPR 321
Query: 293 LMRVLTVTGVFGTQEPHDDGGGCDDELVYTLTPASRLLV 409
LM++L G+F ++ G + +Y L SRLLV
Sbjct: 322 LMKMLAAAGIFTAEDVPATVGDGEPTTLYHLNAVSRLLV 438
Score = 40.9 bits (83), Expect(3) = 8e-031
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3 / +1
Query: 522 SPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
+PF + HG ++ + D+ F+ +F+ M A S F+ + VREC
Sbjct: 568 TPFMLAHGGTLYGIGGRDSEFNTVFNKAMGASSEFVAALAVREC 699
Score = 25.4 bits (49), Expect(3) = 8e-031
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3 / +1
Query: 408 SAQRGKNVNPLMKVMLRPIFVSSFLDLRGWFQHE 509
S G +++P + + P+F+ + L L W Q E
Sbjct: 448 SVNGGASMSPCVLLGTVPLFLGASLKLHEWLQSE 549
>gb|BI949226.1|BI949226 HVSMEl0012O03f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0012O03f, mRNA sequence
Length = 834
Score = 105 bits (223), Expect(3) = 1e-029
Identities = 41/99 (41%), Positives = 68/99 (68%)
Frame = +2 / +1
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L AE +L+ H+FGY+KSMAL++ + L IPD +H++GG+A++P++++ + +HP+K P L R
Sbjct: 79 LQAEAELFCHSFGYLKSMALQSVVKLRIPDVLHRYGGAASLPELLSTVPIHPNKLPYLPR 258
Query: 293 LMRVLTVTGVFGTQEPHDDGGGCDDELVYTLTPASRLLV 409
LM++L G+F ++ G + +Y L SRLLV
Sbjct: 259 LMKMLAAAGIFTAEDVPATVGDGEPTTLYHLNAVSRLLV 375
Score = 36.8 bits (74), Expect(3) = 1e-029
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3 / +1
Query: 522 SPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVRE 650
+PF + HG ++ + D+ F+ +F+ M A S F+ + VRE
Sbjct: 505 TPFMLAHGGTLYGIGGRDSEFNTVFNKAMGASSEFVAALAVRE 633
Score = 25.4 bits (49), Expect(3) = 1e-029
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3 / +1
Query: 408 SAQRGKNVNPLMKVMLRPIFVSSFLDLRGWFQHE 509
S G +++P + + P+F+ + L L W Q E
Sbjct: 385 SVNGGASMSPCVLLGTVPLFLGASLKLHEWLQSE 486
>gb|BG310228.1|BG310228 HVSMEc0016J04f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016J04f, mRNA sequence
Length = 837
Score = 99.1 bits (210), Expect(3) = 4e-029
Identities = 42/91 (46%), Positives = 57/91 (62%)
Frame = +2 / +1
Query: 104 QVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPC 283
Q L+A +L NH GYVK+ +LK A+DLG+P AIH+ GG+AT+ I T +HP+K
Sbjct: 94 QELLEALAELQNHVLGYVKATSLKCAVDLGVPAAIHKRGGTATLADIATDAKVHPAKVAD 273
Query: 284 LRRLMRVLTVTGVFGTQEPHDDGGGCDDELV 376
LRR+M +LT +G+F T DG D V
Sbjct: 274 LRRMMALLTASGIFTTTAEDGDGAADDTAAV 366
Score = 36.3 bits (73), Expect(3) = 4e-029
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3 / +1
Query: 423 KNVNPLMKVMLRPIFVSSFLDLRGWFQHE 509
+N++P+ + P+ VSSF DL GW + E
Sbjct: 409 RNLSPVAPFFVNPLIVSSFFDLPGWLRSE 495
Score = 29.9 bits (59), Expect(3) = 4e-029
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3 / +1
Query: 522 SPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVRECG 656
S F HG E+ D GF + M ADS + V++ + G
Sbjct: 517 SLFEQAHGCSRQEMARKDPGFGTVLRDAMTADSELFLEVIIGDKG 651
>gb|BI956571.1|BI956571 HVSMEn0004D06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004D06f, mRNA sequence
Length = 780
Score = 96.4 bits (204), Expect(3) = 1e-028
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +3 / +3
Query: 426 NVNPLMKVMLRPIFVSSFLDLRGWFQHEMPDPSPFNVTHGRDIWELDAHDAGFSRLFDAG 605
N+ P++ + L+P VSSF +L WFQH++P+P F + HG+ WE+ H+A F+ + +
Sbjct: 153 NIVPVINLQLQPNIVSSFSELGAWFQHKLPEPDLFKLKHGKTFWEIAHHNAAFNTIVNDA 332
Query: 606 MVADSGFIMNVVVRECG 656
M +DS F+M++ +RECG
Sbjct: 333 MASDSRFLMDIAIRECG 383
Score = 42.3 bits (86), Expect(3) = 1e-028
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +2 / +3
Query: 272 KTPCLRRLMRVLTVTGVFGTQEP 340
K CLRRLMRVLTV+GVF Q+P
Sbjct: 3 KICCLRRLMRVLTVSGVFSVQQP 71
Score = 25.4 bits (49), Expect(3) = 1e-028
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / +3
Query: 368 ELVYTLTPASRLLV 409
ELVYTLT S LLV
Sbjct: 96 ELVYTLTAVSHLLV 137
>gb|BI949030.1|BI949030 HVSMEl0012B14f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0012B14f, mRNA sequence
Length = 972
Score = 87.2 bits (184), Expect(3) = 2e-028
Identities = 38/65 (58%), Positives = 47/65 (72%)
Frame = +2 / +3
Query: 131 LWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRRLMRVLT 310
L++H F YVKSMAL AA DL IPDAIH GG+AT+ + ++P+K LRRLMRVLT
Sbjct: 63 LYHHCFVYVKSMALGAATDLRIPDAIHLRGGAATLSDLAADTGIYPTKLSHLRRLMRVLT 242
Query: 311 VTGVF 325
+GVF
Sbjct: 243 TSGVF 257
Score = 51.9 bits (107), Expect(3) = 2e-028
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = +3 / +3
Query: 522 SPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
S F V HG WE+ A DAG RLF+A M ADS M ++++EC
Sbjct: 456 SLFEVAHGCTRWEMIAKDAGDDRLFNASMAADSCLTMVILLKEC 587
Score = 24.0 bits (46), Expect(3) = 2e-028
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2 / +3
Query: 368 ELVYTLTPASRLLVGPTGQ 424
+ Y LT SRLLVG G+
Sbjct: 282 DTTYKLTRVSRLLVGAGGE 338
>gb|BF253443.2|BF253443 HVSMEf0001G23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001G23f, mRNA sequence
Length = 850
Score = 93.6 bits (198), Expect(3) = 7e-028
Identities = 41/71 (57%), Positives = 51/71 (71%)
Frame = +2 / +3
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L A+L L++H F YVKSMAL AA DL IPDAIH GG+AT+ + ++P+K LRR
Sbjct: 36 LQAQLDLYHHCFVYVKSMALGAATDLRIPDAIHLRGGAATLSDLAADTGIYPTKLSHLRR 215
Query: 293 LMRVLTVTGVF 325
LMRVLT +GVF
Sbjct: 216 LMRVLTTSGVF 248
Score = 43.7 bits (89), Expect(3) = 7e-028
Identities = 20/37 (54%), Positives = 22/37 (59%)
Frame = +3 / +3
Query: 522 SPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIM 632
S F V HG WE+ A DAG RLF+A M ADS M
Sbjct: 447 SLFEVAHGCTRWEMIAKDAGDDRLFNASMAADSCLTM 557
Score = 24.0 bits (46), Expect(3) = 7e-028
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2 / +3
Query: 368 ELVYTLTPASRLLVGPTGQ 424
+ Y LT SRLLVG G+
Sbjct: 273 DTTYKLTRVSRLLVGAGGE 329
>gb|BI949033.1|BI949033 HVSMEl0012B18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0012B18f, mRNA sequence
Length = 966
Score = 97.7 bits (207), Expect(3) = 4e-027
Identities = 42/83 (50%), Positives = 57/83 (68%)
Frame = +2 / +2
Query: 77 QQHTASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRI 256
Q+ + + L A+L+L++H F YVKSMAL+AA DL IPDAIH GG+AT+ +
Sbjct: 8 QEDELTMSSEELLQAQLELYHHCFVYVKSMALRAATDLRIPDAIHLRGGAATLSDLAADT 187
Query: 257 TLHPSKTPCLRRLMRVLTVTGVF 325
++P+K LRRLMRVLT +GVF
Sbjct: 188 GIYPTKLSHLRRLMRVLTTSGVF 256
Score = 36.8 bits (74), Expect(3) = 4e-027
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3 / +2
Query: 522 SPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVV 641
S +V HG WE+ A DAG RL++A M A S M ++
Sbjct: 455 SLLDVAHGCTRWEMIAKDAGDDRLYNASMGAHSCVTMGIL 574
Score = 24.0 bits (46), Expect(3) = 4e-027
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2 / +2
Query: 368 ELVYTLTPASRLLVGPTGQ 424
+ Y LT SRLLVG G+
Sbjct: 281 DTTYKLTRVSRLLVGAGGE 337
>gb|BF265921.2|BF265921 HV_CEa0013K24f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013K24f, mRNA sequence
Length = 766
Score = 99.1 bits (210), Expect(3) = 5e-027
Identities = 42/91 (46%), Positives = 57/91 (62%)
Frame = +2 / +2
Query: 104 QVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPC 283
Q L+A +L NH GYVK+ +LK A+DLG+P AIH+ GG+AT+ I T +HP+K
Sbjct: 98 QELLEALAELQNHVLGYVKATSLKCAVDLGVPAAIHKRGGTATLADIATDAKVHPAKVAD 277
Query: 284 LRRLMRVLTVTGVFGTQEPHDDGGGCDDELV 376
LRR+M +LT +G+F T DG D V
Sbjct: 278 LRRMMALLTASGIFTTTAEDGDGAADDTAAV 370
Score = 36.3 bits (73), Expect(3) = 5e-027
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3 / +2
Query: 423 KNVNPLMKVMLRPIFVSSFLDLRGWFQHE 509
+N++P+ + P+ VSSF DL GW + E
Sbjct: 413 RNLSPVAPFFVNPLIVSSFFDLPGWLRSE 499
Score = 23.1 bits (44), Expect(3) = 5e-027
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3 / +2
Query: 522 SPFNVTHGRDIWELDAHDAGFSRLFDAGMVADS 620
S F HG E+ DAGF + M ADS
Sbjct: 521 SLFEQAHGCFPEEMARKDAGFGTVLMDPMTADS 619
>gb|BI951913.1|BI951913 HVSMEm0003K22f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0003K22f, mRNA sequence
Length = 866
Score = 91.3 bits (193), Expect(3) = 8e-027
Identities = 41/71 (57%), Positives = 51/71 (71%)
Frame = +2 / +2
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L A+L L++H F YVKSMAL AA DL IPDAIH GG+AT+ + ++P+K LRR
Sbjct: 32 LQAQLDLYHHCFVYVKSMALGAATDLRIPDAIHLRGGAATLWGLAADTGIYPTKLSHLRR 211
Query: 293 LMRVLTVTGVF 325
LMRVLT +GVF
Sbjct: 212 LMRVLTTSGVF 244
Score = 42.3 bits (86), Expect(3) = 8e-027
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +3 / +2
Query: 522 SPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVR 647
S F V HG WE+ DA RLF+A M ADS M +++R
Sbjct: 443 SLFEVAHGCTRWEMIXKDACDDRLFNASMAADSCLTMGILLR 568
Score = 24.0 bits (46), Expect(3) = 8e-027
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2 / +2
Query: 368 ELVYTLTPASRLLVGPTGQ 424
+ Y LT SRLLVG G+
Sbjct: 269 DTTYKLTRVSRLLVGAGGE 325
>gb|BF621230.2|BF621230 HVSMEa0006C03f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006C03f, mRNA sequence
Length = 808
Score = 95.0 bits (201), Expect(3) = 1e-026
Identities = 42/83 (50%), Positives = 55/83 (66%)
Frame = +2 / +3
Query: 77 QQHTASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRI 256
Q+ + + L A+L L++H F YVKSMAL AA DL IPDAIH GG+AT+ +
Sbjct: 12 QEDELTMSSEELLQAQLDLYHHCFVYVKSMALGAATDLRIPDAIHLRGGAATLSDLAADT 191
Query: 257 TLHPSKTPCLRRLMRVLTVTGVF 325
++P+K LRRLMRVLT +GVF
Sbjct: 192 GIYPTKLSHLRRLMRVLTTSGVF 260
Score = 38.2 bits (77), Expect(3) = 1e-026
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3 / +3
Query: 528 FNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVRE 650
F V HG WE+ A DAG RL++A M + M ++ +E
Sbjct: 465 FEVAHGCTRWEMIAKDAGDDRLYNASMAQNR*LTMGILHKE 587
Score = 24.0 bits (46), Expect(3) = 1e-026
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2 / +3
Query: 368 ELVYTLTPASRLLVGPTGQ 424
+ Y LT SRLLVG G+
Sbjct: 285 DTTYKLTRVSRLLVGAGGE 341
>gb|CV054774.1|CV054774 BNEL113b6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL113b6 5' similar to catechol
O-methyltransferase, mRNA sequence
Length = 590
Score = 91.8 bits (194), Expect(3) = 2e-026
Identities = 40/92 (43%), Positives = 57/92 (61%)
Frame = +2 / +1
Query: 65 TISEQQHTASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQI 244
T+ + A+ + L A +LWN TFGY+KSMAL A+ LG+P+AIH+ GG+AT+P +
Sbjct: 4 TVQLKTTMATFSNEELLQAHAELWNLTFGYLKSMALDCAIKLGLPNAIHRCGGAATLPDL 183
Query: 245 VTRITLHPSKTPCLRRLMRVLTVTGVFGTQEP 340
+ I++ SK L RLMR L G+F P
Sbjct: 184 LDAISVPESKKAHLPRLMRFLAAFGIFTVNLP 279
Score = 41.4 bits (84), Expect(3) = 2e-026
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3 / +1
Query: 522 SPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMN 635
+PF + HG D+W + D +++F+AGM +D+ F M+
Sbjct: 475 TPFRMAHGTDLWGVMDRDPTMNQVFNAGMESDTRFAMD 588
Score = 23.5 bits (45), Expect(3) = 2e-026
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2 / +1
Query: 377 YTLTPASRLLVGPTG 421
Y LTP SRLLV G
Sbjct: 307 YGLTPMSRLLVDDAG 351
>gb|BI957257.1|BI957257 HVSMEn0008H11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0008H11f, mRNA sequence
Length = 446
Score = 118 bits (252), Expect = 3e-026
Identities = 50/80 (62%), Positives = 59/80 (73%)
Frame = +2 / +1
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L A+L+LW+ +FGYVKSMALK+ LDLGI DAIH HGG+AT+ QI TLHPSK CLR
Sbjct: 70 LXAQLELWHISFGYVKSMALKSCLDLGIADAIHHHGGAATLSQIGAVTTLHPSKICCLRH 249
Query: 293 LMRVLTVTGVFGTQEPHDDG 352
LMRVLT V+ Q+P G
Sbjct: 250 LMRVLTAFSVYHVQQPSASG 309
>gb|AW982411.2|AW982411 HVSMEg0003D05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003D05f, mRNA sequence
Length = 1041
Score = 96.4 bits (204), Expect(3) = 4e-026
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +3 / +3
Query: 426 NVNPLMKVMLRPIFVSSFLDLRGWFQHEMPDPSPFNVTHGRDIWELDAHDAGFSRLFDAG 605
N+ P++ + L+P VSSF +L WFQH++P+P F + HG+ WE+ H+A F+ + +
Sbjct: 135 NIVPVINLQLQPNIVSSFSELGAWFQHKLPEPDLFKLKHGKTFWEIAHHNAAFNTIVNDA 314
Query: 606 MVADSGFIMNVVVRECG 656
M +DS F+M++ +RECG
Sbjct: 315 MASDSRFLMDIAIRECG 365
Score = 33.6 bits (67), Expect(3) = 4e-026
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2 / +3
Query: 290 RLMRVLTVTGVFGTQEP 340
RLMRVLTV+GVF Q+P
Sbjct: 3 RLMRVLTVSGVFSVQQP 53
Score = 25.4 bits (49), Expect(3) = 4e-026
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / +3
Query: 368 ELVYTLTPASRLLV 409
ELVYTLT S LLV
Sbjct: 78 ELVYTLTAVSHLLV 119
>gb|BF263474.2|BF263474 HV_CEa0006N11f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006N11f, mRNA sequence
Length = 842
Score = 100 bits (212), Expect(2) = 1e-025
Identities = 42/92 (45%), Positives = 58/92 (63%)
Frame = +2 / +2
Query: 104 QVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPC 283
Q L+A +L NH GYVK+ +LK A+DLG+P AIH+ GG+AT+ I T +HP+K
Sbjct: 110 QELLEALAELQNHVLGYVKATSLKCAVDLGVPAAIHKRGGTATLADIATDAKVHPAKVAD 289
Query: 284 LRRLMRVLTVTGVFGTQEPHDDGGGCDDELVY 379
LRR+M +LT +G+F T DG D V+
Sbjct: 290 LRRMMALLTASGIFTTTAEDGDGAADDTAAVH 385
Score = 36.3 bits (73), Expect(2) = 1e-025
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3 / +2
Query: 423 KNVNPLMKVMLRPIFVSSFLDLRGWFQHE 509
+N++P+ + P+ VSSF DL GW + E
Sbjct: 425 RNLSPVAPFFVNPLIVSSFFDLPGWLKSE 511
>gb|AV836271.1|AV836271 AV836271 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd3c22, mRNA
sequence
Length = 543
Score = 88.1 bits (186), Expect(3) = 1e-025
Identities = 39/71 (54%), Positives = 49/71 (69%)
Frame = +2 / +3
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L A+ L++H F YVKSMAL AA DL IPDAIH GG+AT+ + ++P+K LR
Sbjct: 39 LQAQFDLYHHCFVYVKSMALGAATDLRIPDAIHLRGGAATLSDLAADTGIYPTKLSHLRW 218
Query: 293 LMRVLTVTGVF 325
LMRVLT +GVF
Sbjct: 219 LMRVLTTSGVF 251
Score = 41.4 bits (84), Expect(3) = 1e-025
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +3 / +3
Query: 522 SPFNVTHGRDIWELDAHDAGFSRLFDAGMVA 614
S F V HG WE+ A DAG RLF+AGM A
Sbjct: 450 SLFEVAHGCTRWEMIAKDAGDDRLFNAGMAA 542
Score = 24.0 bits (46), Expect(3) = 1e-025
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2 / +3
Query: 368 ELVYTLTPASRLLVGPTGQ 424
+ Y LT SRLLVG G+
Sbjct: 276 DTTYKLTRVSRLLVGAGGE 332
>gb|CB879287.1|CB879287 HP11K01T HP Hordeum vulgare subsp. vulgare cDNA clone HP11K01
5-PRIME, mRNA sequence
Length = 625
Score = 99.1 bits (210), Expect(2) = 2e-025
Identities = 42/91 (46%), Positives = 57/91 (62%)
Frame = +2 / +2
Query: 104 QVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPC 283
Q L+A +L NH GYVK+ +LK A+DLG+P AIH+ GG+AT+ I T +HP+K
Sbjct: 128 QELLEALAELQNHVLGYVKATSLKCAVDLGVPAAIHKRGGTATLADIATDAKVHPAKVAD 307
Query: 284 LRRLMRVLTVTGVFGTQEPHDDGGGCDDELV 376
LRR+M +LT +G+F T DG D V
Sbjct: 308 LRRMMALLTASGIFTTTAEDGDGAADDTAAV 400
Score = 36.3 bits (73), Expect(2) = 2e-025
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3 / +2
Query: 423 KNVNPLMKVMLRPIFVSSFLDLRGWFQHE 509
+N++P+ + P+ VSSF DL GW + E
Sbjct: 443 RNLSPVAPFFVNPLIVSSFFDLPGWLRSE 529
>gb|CB878690.1|CB878690 HP09H16T HP Hordeum vulgare subsp. vulgare cDNA clone HP09H16
5-PRIME, mRNA sequence
Length = 592
Score = 99.1 bits (210), Expect(2) = 2e-025
Identities = 42/91 (46%), Positives = 57/91 (62%)
Frame = +2 / +3
Query: 104 QVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPC 283
Q L+A +L NH GYVK+ +LK A+DLG+P AIH+ GG+AT+ I T +HP+K
Sbjct: 123 QELLEALAELQNHVLGYVKATSLKCAVDLGVPAAIHKRGGTATLADIATDAKVHPAKVAD 302
Query: 284 LRRLMRVLTVTGVFGTQEPHDDGGGCDDELV 376
LRR+M +LT +G+F T DG D V
Sbjct: 303 LRRMMALLTASGIFTTTAEDGDGAADDTAAV 395
Score = 36.3 bits (73), Expect(2) = 2e-025
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3 / +3
Query: 423 KNVNPLMKVMLRPIFVSSFLDLRGWFQHE 509
+N++P+ + P+ VSSF DL GW + E
Sbjct: 438 RNLSPVAPFFVNPLIVSSFFDLPGWLRSE 524
>gb|BG309537.1|BG309537 HVSMEc0010O12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0010O12f, mRNA sequence
Length = 818
Score = 98.2 bits (208), Expect(2) = 3e-025
Identities = 41/88 (46%), Positives = 56/88 (63%)
Frame = +2 / +3
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L+A +L NH GYVK+ +LK A+DLG+P AIH+ GG+AT+ I T +HP+K LRR
Sbjct: 132 LEALAELQNHVLGYVKATSLKCAVDLGVPAAIHKRGGTATLADIATDAKVHPAKVADLRR 311
Query: 293 LMRVLTVTGVFGTQEPHDDGGGCDDELV 376
+M +LT +G+F T DG D V
Sbjct: 312 MMALLTASGIFTTTAEDGDGAADDTAAV 395
Score = 36.3 bits (73), Expect(2) = 3e-025
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3 / +3
Query: 423 KNVNPLMKVMLRPIFVSSFLDLRGWFQHE 509
+N++P+ + P+ VSSF DL GW + E
Sbjct: 438 RNLSPVAPFFVNPLIVSSFFDLPGWLRSE 524
>gb|BG417465.1|BG417465 HVSMEk0017L14f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017L14f, mRNA sequence
Length = 917
Score = 84.9 bits (179), Expect(2) = 2e-024
Identities = 35/78 (44%), Positives = 52/78 (66%)
Frame = +2 / +1
Query: 92 SSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPS 271
+S + L A +LWN TF Y+KSMAL+ A+ LGIP AIH+ GG+A++ ++ +++ S
Sbjct: 31 TSSNKELLQAHAELWNLTFSYLKSMALECAIKLGIPTAIHRCGGTASLTDLLAALSIPES 210
Query: 272 KTPCLRRLMRVLTVTGVF 325
K L RLMR L +G+F
Sbjct: 211 KKSYLPRLMRFLAASGIF 264
Score = 49.2 bits (101), Expect(2) = 2e-024
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +3 / +1
Query: 525 PFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVV 641
P+ + HG D WE+ A D +++F+AGM AD+ F MN +
Sbjct: 493 PYKMAHGTDHWEIMARDPKLNQVFNAGMAADTQFAMNFI 609
>gb|BI949816.1|BI949816 HVSMEl0016D14f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0016D14f, mRNA sequence
Length = 530
Score = 93.6 bits (198), Expect(3) = 2e-024
Identities = 41/71 (57%), Positives = 51/71 (71%)
Frame = +2 / +2
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L A+L L++H F YVKSMAL AA DL IPDAIH GG+AT+ + ++P+K LRR
Sbjct: 35 LQAQLDLYHHCFVYVKSMALGAATDLRIPDAIHLRGGAATLSDLAADTGIYPTKLSHLRR 214
Query: 293 LMRVLTVTGVF 325
LMRVLT +GVF
Sbjct: 215 LMRVLTTSGVF 247
Score = 32.2 bits (64), Expect(3) = 2e-024
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3 / +2
Query: 522 SPFNVTHGRDIWELDAHDAGFSRLFDA 602
S F V HG WE+ DAG RLF+A
Sbjct: 446 SLFEVAHGCTRWEMIPKDAGDDRLFNA 526
Score = 23.5 bits (45), Expect(3) = 2e-024
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2 / +2
Query: 368 ELVYTLTPASRLLVGPTGQ 424
+ Y LT SRLLVG G+
Sbjct: 272 DTTYKLTRVSRLLVGAGGK 328
>gb|BI950884.1|BI950884 HVSMEl0023I12f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023I12f, mRNA sequence
Length = 958
Score = 88.1 bits (186), Expect(3) = 3e-024
Identities = 38/84 (45%), Positives = 53/84 (63%)
Frame = +2 / +1
Query: 89 ASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHP 268
A+ + L A +LWN TFGY+KSMAL A+ LG+P+AIH+ G+AT+P ++ I++
Sbjct: 13 ATFSNEELLQAHAELWNLTFGYLKSMALDCAIKLGLPNAIHRCSGAATLPDLLDAISVPE 192
Query: 269 SKTPCLRRLMRVLTVTGVFGTQEP 340
SK L RLMR L G+F P
Sbjct: 193 SKKAHLPRLMRFLAAFGIFTVNLP 264
Score = 37.3 bits (75), Expect(3) = 3e-024
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3 / +1
Query: 522 SPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVV 644
+PF + HG D+W + D +++ +A M +D F M+ VV
Sbjct: 460 TPFRMAHGTDLWGVMDRDPTMNQVLNASMGSDIRFAMDFVV 582
Score = 23.5 bits (45), Expect(3) = 3e-024
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2 / +1
Query: 377 YTLTPASRLLVGPTG 421
Y LTP SRLLV G
Sbjct: 292 YGLTPMSRLLVDDAG 336
>gb|BF257709.1|BF257709 HVSMEf0013K13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013K13f, mRNA sequence
Length = 538
Score = 107 bits (229), Expect = 5e-023
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = +2 / +3
Query: 89 ASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHP 268
+ + Q L A++ LW+H G+VKSMALK A++L IP+ IH +GG+ T ++ T+I LH
Sbjct: 21 SKNSSQDLLHAQVDLWHHA*GFVKSMALKCAMELQIPNIIHHNGGAMTPSELATKIGLHA 200
Query: 269 SKTPCLRRLMRVLTVTGVFGTQE 337
SK PCLRRLMRVLTV+ +F QE
Sbjct: 201 SKLPCLRRLMRVLTVSCIFDVQE 269
>gb|BE215985.1|BE215985 HV_CEb0009A08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009A08f, mRNA sequence
Length = 583
Score = 101 bits (216), Expect = 3e-021
Identities = 43/91 (47%), Positives = 58/91 (63%)
Frame = +2 / +3
Query: 104 QVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPC 283
Q L+A +L NH GYVK+ +LK A+DLG+P AIH+ GG+AT+ I T +HP+K
Sbjct: 144 QELLEALAELQNHVLGYVKATSLKCAVDLGVPAAIHKRGGTATLADIATDAKVHPAKVAD 323
Query: 284 LRRLMRVLTVTGVFGTQEPHDDGGGCDDELV 376
LRR+M +LT +G+F T DG G D V
Sbjct: 324 LRRMMALLTASGIFTTTAEDGDGAGDDTAAV 416
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 318,560,711
Number of Sequences: 312970
Number of extensions: 5767585
Number of successful extensions: 98956
Number of sequences better than 1.0e-020: 47
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7083590403
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)