TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297817.2.1
(687 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG343710.2|BG343710 HVSMEg0006I14f Hordeum vulgare pre-a... 116 8e-033
gb|BI960409.1|BI960409 HVSMEn0024I03f Hordeum vulgare rachi... 117 8e-033
gb|BI958362.1|BI958362 HVSMEn0014K03f Hordeum vulgare rachi... 116 8e-033
gb|BI959158.1|BI959158 HVSMEn0018G19f Hordeum vulgare rachi... 116 8e-033
gb|CA023672.1|CA023672 HZ47A11r HZ Hordeum vulgare subsp. v... 116 1e-032
gb|BU966878.1|BU966878 HB02K09r BC Hordeum vulgare subsp. v... 116 1e-032
gb|CA020560.1|CA020560 HZ36K19r HZ Hordeum vulgare subsp. v... 116 1e-032
gb|BI960386.1|BI960386 HVSMEn0024G19f Hordeum vulgare rachi... 116 2e-031
gb|BI778564.2|BI778564 EBro07_SQ003_K16_R root, 3 week, red... 116 4e-031
gb|BI959029.1|BI959029 HVSMEn0017M19f Hordeum vulgare rachi... 116 4e-031
gb|BM441958.2|BM441958 EBan01_SQ001_C02_R anther, yellow st... 116 2e-030
gb|BQ764958.1|BQ764958 EBca01_SQ005_K07_R carpel, pre-anthe... 116 2e-030
gb|BQ740073.1|BQ740073 HC04F05 HC Hordeum vulgare subsp. vu... 116 2e-030
gb|BE559393.2|BE559393 HV_CEb0024H10f Hordeum vulgare seedl... 111 7e-029
gb|BQ753967.1|BQ753967 EBca01_SQ002_G14_R carpel, pre-anthe... 108 3e-028
gb|BI959865.1|BI959865 HVSMEn0022B20f Hordeum vulgare rachi... 100 7e-028
gb|AJ434957.1|AJ434957 AJ434957 S00002 Hordeum vulgare subs... 116 2e-027
gb|BE558435.3|BE558435 HV_CEb0017K17f Hordeum vulgare seedl... 96 2e-024
gb|AL499827.1|AL499827 AL499827 Hordeum vulgare Barke etiol... 92 1e-021
>gb|BG343710.2|BG343710 HVSMEg0006I14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006I14f, mRNA sequence
Length = 965
Score = 116 bits (248), Expect(3) = 8e-033
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = -3 / +2
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 128 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL* 307
Query: 379 TDLMSVS 359
+ S
Sbjct: 308 NFFLPAS 328
Score = 103 bits (219), Expect(2) = 8e-027
Identities = 47/61 (77%), Positives = 49/61 (80%)
Frame = +3 / -3
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 315 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 136
Query: 552 L 554
L
Sbjct: 135 L 133
Score = 36.8 bits (74), Expect(2) = 8e-027
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -3
Query: 615 YADECSCGTDLHFSM 659
YA CSCGTDLHFSM
Sbjct: 69 YAAACSCGTDLHFSM 25
Score = 35.9 bits (72), Expect(3) = 8e-033
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +2
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 23 AMEKCRSVPHEHAAA 67
Score = 25.8 bits (50), Expect(3) = 8e-033
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1 / +1
Query: 324 HTYMCMHEPWCSYICNYICTRKLYACQ 244
+ Y+ MHE C +C C Y C+
Sbjct: 358 YIYVHMHEGVCMCVCYCCCCCCCYTCR 438
>gb|BI960409.1|BI960409 HVSMEn0024I03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024I03f, mRNA sequence
Length = 687
Score = 117 bits (251), Expect(3) = 8e-033
Identities = 49/65 (75%), Positives = 55/65 (84%)
Frame = -3 / +3
Query: 553 KSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL*TD 374
KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 189 KSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL*NF 368
Query: 373 LMSVS 359
L+ S
Sbjct: 369 LLPAS 383
Score = 103 bits (219), Expect(2) = 8e-027
Identities = 47/61 (77%), Positives = 49/61 (80%)
Frame = +3 / -3
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 370 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 191
Query: 552 L 554
L
Sbjct: 190 L 188
Score = 36.8 bits (74), Expect(2) = 8e-027
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -3
Query: 615 YADECSCGTDLHFSM 659
YA CSCGTDLHFSM
Sbjct: 124 YAAACSCGTDLHFSM 80
Score = 35.9 bits (72), Expect(3) = 8e-033
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +3
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 78 AMEKCRSVPHEHAAA 122
Score = 24.4 bits (47), Expect(3) = 8e-033
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = -1 / +2
Query: 324 HTYMCMHEPWCSYICNYICTRKLYAC 247
+ Y+ MHE C +C C Y C
Sbjct: 413 YIYVHMHEGVCMCVCYCWCCCCCYTC 490
>gb|BI958362.1|BI958362 HVSMEn0014K03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014K03f, mRNA sequence
Length = 654
Score = 116 bits (248), Expect(3) = 8e-033
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = -3 / +1
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 196 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL* 375
Query: 379 TDLMSVS 359
+ S
Sbjct: 376 NFFLPAS 396
Score = 103 bits (219), Expect(2) = 8e-027
Identities = 47/61 (77%), Positives = 49/61 (80%)
Frame = +3 / -2
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 383 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 204
Query: 552 L 554
L
Sbjct: 203 L 201
Score = 36.8 bits (74), Expect(2) = 8e-027
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -2
Query: 615 YADECSCGTDLHFSM 659
YA CSCGTDLHFSM
Sbjct: 137 YAAACSCGTDLHFSM 93
Score = 35.9 bits (72), Expect(3) = 8e-033
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +1
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 91 AMEKCRSVPHEHAAA 135
Score = 25.8 bits (50), Expect(3) = 8e-033
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1 / +3
Query: 324 HTYMCMHEPWCSYICNYICTRKLYACQ 244
+ Y+ MHE C +C C Y C+
Sbjct: 426 YIYVHMHEGVCMCVCYCCCCCCCYTCR 506
>gb|BI959158.1|BI959158 HVSMEn0018G19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018G19f, mRNA sequence
Length = 647
Score = 116 bits (248), Expect(3) = 8e-033
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = -3 / +3
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 177 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL* 356
Query: 379 TDLMSVS 359
+ S
Sbjct: 357 NFFLPAS 377
Score = 103 bits (219), Expect(2) = 8e-027
Identities = 47/61 (77%), Positives = 49/61 (80%)
Frame = +3 / -2
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 364 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 185
Query: 552 L 554
L
Sbjct: 184 L 182
Score = 36.8 bits (74), Expect(2) = 8e-027
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -2
Query: 615 YADECSCGTDLHFSM 659
YA CSCGTDLHFSM
Sbjct: 118 YAAACSCGTDLHFSM 74
Score = 35.9 bits (72), Expect(3) = 8e-033
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +3
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 72 AMEKCRSVPHEHAAA 116
Score = 25.8 bits (50), Expect(3) = 8e-033
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1 / +2
Query: 324 HTYMCMHEPWCSYICNYICTRKLYACQ 244
+ Y+ MHE C +C C Y C+
Sbjct: 407 YIYVHMHEGVCMCVCYCCCCCCCYTCR 487
>gb|CA023672.1|CA023672 HZ47A11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47A11
5-PRIME, mRNA sequence
Length = 547
Score = 116 bits (248), Expect(3) = 1e-032
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = -3 / +3
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 213 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL* 392
Query: 379 TDLMSVS 359
+ S
Sbjct: 393 NFFLPAS 413
Score = 103 bits (219), Expect(2) = 8e-027
Identities = 47/61 (77%), Positives = 49/61 (80%)
Frame = +3 / -1
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 400 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 221
Query: 552 L 554
L
Sbjct: 220 L 218
Score = 36.8 bits (74), Expect(2) = 8e-027
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -1
Query: 615 YADECSCGTDLHFSM 659
YA CSCGTDLHFSM
Sbjct: 154 YAAACSCGTDLHFSM 110
Score = 35.9 bits (72), Expect(3) = 1e-032
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +3
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 108 AMEKCRSVPHEHAAA 152
Score = 25.4 bits (49), Expect(3) = 1e-032
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1 / +2
Query: 324 HTYMCMHEPWCSYICNYICTRKLYACQ 244
+ Y+ MHE C +C C Y C+
Sbjct: 443 YIYVHMHEGVCMCVCCCCCCCCCYTCR 523
>gb|BU966878.1|BU966878 HB02K09r BC Hordeum vulgare subsp. vulgare cDNA clone HB02K09
5-PRIME, mRNA sequence
Length = 533
Score = 116 bits (248), Expect(3) = 1e-032
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = -3 / +2
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 206 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL* 385
Query: 379 TDLMSVS 359
+ S
Sbjct: 386 NFFLPAS 406
Score = 103 bits (219), Expect(2) = 8e-027
Identities = 47/61 (77%), Positives = 49/61 (80%)
Frame = +3 / -3
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 393 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 214
Query: 552 L 554
L
Sbjct: 213 L 211
Score = 36.8 bits (74), Expect(2) = 8e-027
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -3
Query: 615 YADECSCGTDLHFSM 659
YA CSCGTDLHFSM
Sbjct: 147 YAAACSCGTDLHFSM 103
Score = 35.9 bits (72), Expect(3) = 1e-032
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +2
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 101 AMEKCRSVPHEHAAA 145
Score = 25.4 bits (49), Expect(3) = 1e-032
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1 / +1
Query: 324 HTYMCMHEPWCSYICNYICTRKLYACQ 244
+ Y+ MHE C +C C Y C+
Sbjct: 436 YIYVHMHEGVCMCVCCCCCCCCCYTCR 516
>gb|CA020560.1|CA020560 HZ36K19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36K19
5-PRIME, mRNA sequence
Length = 486
Score = 116 bits (248), Expect(3) = 1e-032
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = -3 / +1
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 175 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL* 354
Query: 379 TDLMSVS 359
+ S
Sbjct: 355 NFFLPAS 375
Score = 103 bits (219), Expect(2) = 8e-027
Identities = 47/61 (77%), Positives = 49/61 (80%)
Frame = +3 / -2
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 362 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 183
Query: 552 L 554
L
Sbjct: 182 L 180
Score = 36.8 bits (74), Expect(2) = 8e-027
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -2
Query: 615 YADECSCGTDLHFSM 659
YA CSCGTDLHFSM
Sbjct: 116 YAAACSCGTDLHFSM 72
Score = 35.9 bits (72), Expect(3) = 1e-032
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +1
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 70 AMEKCRSVPHEHAAA 114
Score = 25.4 bits (49), Expect(3) = 1e-032
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1 / +3
Query: 324 HTYMCMHEPWCSYICNYICTRKLYACQ 244
+ Y+ MHE C +C C Y C+
Sbjct: 405 YIYVHMHEGVCMCVCCCCCCCCCYTCR 485
>gb|BI960386.1|BI960386 HVSMEn0024G19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024G19f, mRNA sequence
Length = 653
Score = 116 bits (248), Expect(3) = 2e-031
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = -3 / +2
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 185 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL* 364
Query: 379 TDLMSVS 359
+ S
Sbjct: 365 NFFLPAS 385
Score = 103 bits (219), Expect(2) = 9e-025
Identities = 47/61 (77%), Positives = 49/61 (80%)
Frame = +3 / -3
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 372 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 193
Query: 552 L 554
L
Sbjct: 192 L 190
Score = 30.9 bits (61), Expect(3) = 2e-031
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 652 KCRSVPHEHSSA 617
KCRSVPHEH++A
Sbjct: 89 KCRSVPHEHAAA 124
Score = 29.9 bits (59), Expect(2) = 9e-025
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3 / -3
Query: 615 YADECSCGTDLH 650
YA CSCGTDLH
Sbjct: 126 YAAACSCGTDLH 91
Score = 25.8 bits (50), Expect(3) = 2e-031
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1 / +1
Query: 324 HTYMCMHEPWCSYICNYICTRKLYACQ 244
+ Y+ MHE C +C C Y C+
Sbjct: 415 YIYVHMHEGVCMCVCYCCCCCCCYTCR 495
>gb|BI778564.2|BI778564 EBro07_SQ003_K16_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_K16 5', mRNA sequence
Length = 397
Score = 116 bits (248), Expect(2) = 4e-031
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = -3 / +1
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 121 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL* 300
Query: 379 TDLMSVS 359
+ S
Sbjct: 301 NFFLPAS 321
Score = 103 bits (219), Expect(3) = 2e-028
Identities = 47/61 (77%), Positives = 49/61 (80%)
Frame = +3 / -3
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 308 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 129
Query: 552 L 554
L
Sbjct: 128 L 126
Score = 38.6 bits (78), Expect(3) = 2e-028
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = +3 / -3
Query: 615 YADECSCGTDLHFSMDPP 668
YA CSCGTDLHFSM P
Sbjct: 62 YAAACSCGTDLHFSMATP 9
Score = 38.2 bits (77), Expect(2) = 4e-031
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = -3 / +1
Query: 676 RRGGGSMEKCRSVPHEHSSA 617
R G +MEKCRSVPHEH++A
Sbjct: 1 RTRGVAMEKCRSVPHEHAAA 60
Score = 22.1 bits (42), Expect(3) = 2e-028
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1 / -1
Query: 193 HAHVHSSSSIYT 228
H H+H+SS I T
Sbjct: 394 HTHIHTSSCICT 359
>gb|BI959029.1|BI959029 HVSMEn0017M19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017M19f, mRNA sequence
Length = 652
Score = 116 bits (248), Expect(3) = 4e-031
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = -3 / +3
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 201 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL* 380
Query: 379 TDLMSVS 359
+ S
Sbjct: 381 NFFLPAS 401
Score = 103 bits (219), Expect(2) = 1e-025
Identities = 47/61 (77%), Positives = 49/61 (80%)
Frame = +3 / -1
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 388 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 209
Query: 552 L 554
L
Sbjct: 208 L 206
Score = 32.7 bits (65), Expect(2) = 1e-025
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3 / -1
Query: 615 YADECSCGTDLHF 653
YA CSCGTDLHF
Sbjct: 142 YAAACSCGTDLHF 104
Score = 29.9 bits (59), Expect(3) = 4e-031
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3 / +3
Query: 679 RRRGGGSMEKCRSVPHEHSSA 617
+R G KC+SVPHEH++A
Sbjct: 78 QRFAGQPW*KCKSVPHEHAAA 140
Score = 25.8 bits (50), Expect(3) = 4e-031
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1 / +2
Query: 324 HTYMCMHEPWCSYICNYICTRKLYACQ 244
+ Y+ MHE C +C C Y C+
Sbjct: 431 YIYVHMHEGVCMCVCYCCCCCCCYTCR 511
>gb|BM441958.2|BM441958 EBan01_SQ001_C02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_C02 5', mRNA sequence
Length = 600
Score = 116 bits (248), Expect(2) = 2e-030
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = -3 / +3
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 162 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL* 341
Query: 379 TDLMSVS 359
+ S
Sbjct: 342 NFFLPAS 362
Score = 103 bits (219), Expect(3) = 2e-027
Identities = 47/61 (77%), Positives = 49/61 (80%)
Frame = +3 / -3
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 349 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 170
Query: 552 L 554
L
Sbjct: 169 L 167
Score = 36.8 bits (74), Expect(3) = 2e-027
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -3
Query: 615 YADECSCGTDLHFSM 659
YA CSCGTDLHFSM
Sbjct: 103 YAAACSCGTDLHFSM 59
Score = 35.9 bits (72), Expect(2) = 2e-030
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +3
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 57 AMEKCRSVPHEHAAA 101
Score = 22.1 bits (42), Expect(3) = 2e-027
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1 / -1
Query: 193 HAHVHSSSSIYT 228
H H+H+SS I T
Sbjct: 435 HTHIHTSSCICT 400
>gb|BQ764958.1|BQ764958 EBca01_SQ005_K07_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_K07 5', mRNA sequence
Length = 594
Score = 116 bits (248), Expect(2) = 2e-030
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = -3 / +1
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 169 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL* 348
Query: 379 TDLMSVS 359
+ S
Sbjct: 349 NFFLPAS 369
Score = 103 bits (219), Expect(3) = 2e-027
Identities = 47/61 (77%), Positives = 49/61 (80%)
Frame = +3 / -2
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 356 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 177
Query: 552 L 554
L
Sbjct: 176 L 174
Score = 36.8 bits (74), Expect(3) = 2e-027
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -2
Query: 615 YADECSCGTDLHFSM 659
YA CSCGTDLHFSM
Sbjct: 110 YAAACSCGTDLHFSM 66
Score = 35.9 bits (72), Expect(2) = 2e-030
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +1
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 64 AMEKCRSVPHEHAAA 108
Score = 22.1 bits (42), Expect(3) = 2e-027
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1 / -3
Query: 193 HAHVHSSSSIYT 228
H H+H+SS I T
Sbjct: 442 HTHIHTSSCICT 407
>gb|BQ740073.1|BQ740073 HC04F05 HC Hordeum vulgare subsp. vulgare cDNA clone HC04F05
similar to NP_192727.1| (NM_117057) putative protein
[Arabidopsis thaliana] gi|7487734|pir|T03993
hypothetical protein T5L19.20 - Arabidopsis thaliana
gi|4538992|emb|CAB39613.1| (AL04..., mRNA sequence
Length = 635
Score = 116 bits (247), Expect(2) = 2e-030
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = -3 / +3
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 174 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL* 353
Query: 379 TDLMSVS 359
+ S
Sbjct: 354 NLFLPAS 374
Score = 102 bits (218), Expect(2) = 1e-026
Identities = 47/58 (81%), Positives = 48/58 (82%)
Frame = +3 / -2
Query: 381 QRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYDL
Sbjct: 352 QRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYDL 179
Score = 36.8 bits (74), Expect(2) = 1e-026
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -2
Query: 615 YADECSCGTDLHFSM 659
YA CSCGTDLHFSM
Sbjct: 115 YAAACSCGTDLHFSM 71
Score = 35.9 bits (72), Expect(2) = 2e-030
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +3
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 69 AMEKCRSVPHEHAAA 113
>gb|BE559393.2|BE559393 HV_CEb0024H10f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024H10f, mRNA sequence
Length = 942
Score = 111 bits (236), Expect(2) = 7e-029
Identities = 47/67 (70%), Positives = 53/67 (79%)
Frame = -3 / +3
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K+ VR S KW+KSK DVRYGGL*
Sbjct: 192 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSFVRGSFKWVKSKLFDVRYGGL* 371
Query: 379 TDLMSVS 359
+ S
Sbjct: 372 NFFLPTS 392
Score = 100 bits (212), Expect(2) = 7e-026
Identities = 45/61 (73%), Positives = 49/61 (80%)
Frame = +3 / -3
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTS++LDL+HL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 379 KKFQRPP*RTSKSLDLTHLKLPRTKDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 200
Query: 552 L 554
L
Sbjct: 199 L 197
Score = 36.8 bits (74), Expect(2) = 7e-026
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -3
Query: 615 YADECSCGTDLHFSM 659
YA CSCGTDLHFSM
Sbjct: 133 YAAACSCGTDLHFSM 89
Score = 35.9 bits (72), Expect(2) = 7e-029
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +3
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 87 AMEKCRSVPHEHAAA 131
>gb|BQ753967.1|BQ753967 EBca01_SQ002_G14_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_G14 5', mRNA sequence
Length = 340
Score = 108 bits (231), Expect(2) = 3e-028
Identities = 46/60 (76%), Positives = 51/60 (85%)
Frame = -3 / +1
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S WLKSK DVRYGGL*
Sbjct: 157 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSF*WLKSKLFDVRYGGL* 336
Score = 97.3 bits (206), Expect(2) = 4e-025
Identities = 45/58 (77%), Positives = 47/58 (81%)
Frame = +3 / -3
Query: 381 QRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
QRPP*RTS++LDLSH L RT L R C ANTLY ATRRRRFASGSS LGPLKLYDL
Sbjct: 335 QRPP*RTSKSLDLSH*KLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYDL 162
Score = 36.8 bits (74), Expect(2) = 4e-025
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -3
Query: 615 YADECSCGTDLHFSM 659
YA CSCGTDLHFSM
Sbjct: 98 YAAACSCGTDLHFSM 54
Score = 35.9 bits (72), Expect(2) = 3e-028
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +1
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 52 AMEKCRSVPHEHAAA 96
>gb|BI959865.1|BI959865 HVSMEn0022B20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022B20f, mRNA sequence
Length = 644
Score = 99.6 bits (211), Expect(3) = 7e-028
Identities = 41/59 (69%), Positives = 47/59 (79%)
Frame = -3 / +2
Query: 535 GPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL*TDLMSVS 359
GP DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL* + S
Sbjct: 185 GPXAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL*NFFLPAS 361
Score = 83.5 bits (176), Expect(2) = 6e-021
Identities = 39/55 (70%), Positives = 41/55 (74%)
Frame = +3 / -3
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGP 536
+ QRPP*RTSE+LDLSHL L RT L R C ANTL ATRRRRFASGSS GP
Sbjct: 348 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLXDATRRRRFASGSSPAXGP 184
Score = 36.8 bits (74), Expect(2) = 6e-021
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -1
Query: 615 YADECSCGTDLHFSM 659
YA CSCGTDLHFSM
Sbjct: 101 YAAACSCGTDLHFSM 57
Score = 35.9 bits (72), Expect(3) = 7e-028
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +1
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 55 AMEKCRSVPHEHAAA 99
Score = 25.8 bits (50), Expect(3) = 7e-028
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1 / +1
Query: 324 HTYMCMHEPWCSYICNYICTRKLYACQ 244
+ Y+ MHE C +C C Y C+
Sbjct: 391 YIYVHMHEGVCMCVCYCCCCCCCYTCR 471
>gb|AJ434957.1|AJ434957 AJ434957 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200007A03F1, mRNA sequence
Length = 515
Score = 116 bits (248), Expect(2) = 2e-027
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = -3 / +3
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS DDPEAKRRRRVA+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL*
Sbjct: 39 AVKSYSFNGPSAGDDPEAKRRRRVASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL* 218
Query: 379 TDLMSVS 359
+ S
Sbjct: 219 NFFLPAS 239
Score = 103 bits (219), Expect = 1e-021
Identities = 47/61 (77%), Positives = 49/61 (80%)
Frame = +3 / -2
Query: 372 RSVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
+ QRPP*RTSE+LDLSHL L RT L R C ANTLY ATRRRRFASGSS LGPLKLYD
Sbjct: 226 KKFQRPP*RTSESLDLSHLKLPRTEDLSRACEANTLYDATRRRRFASGSSPALGPLKLYD 47
Query: 552 L 554
L
Sbjct: 46 L 44
Score = 25.4 bits (49), Expect(2) = 2e-027
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1 / +2
Query: 324 HTYMCMHEPWCSYICNYICTRKLYACQ 244
+ Y+ MHE C +C C Y C+
Sbjct: 269 YIYVHMHEGVCMCVCCCCCCCCCYTCR 349
>gb|BE558435.3|BE558435 HV_CEb0017K17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017K17f, mRNA sequence
Length = 748
Score = 96.4 bits (204), Expect(2) = 2e-024
Identities = 40/58 (68%), Positives = 48/58 (82%)
Frame = -3 / +3
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGG 386
A KSYSFNGP+ DDP AKR+ RVA+ NV A+Q R+K++VR S+KWLKSK SDVRYGG
Sbjct: 192 AVKSYSFNGPNAGDDP*AKRQWRVASNNVIASQARLKSSVRGSLKWLKSKLSDVRYGG 365
Score = 35.9 bits (72), Expect(2) = 2e-024
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +3
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEH++A
Sbjct: 87 AMEKCRSVPHEHAAA 131
>gb|AL499827.1|AL499827 AL499827 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03J24r 3', mRNA sequence
Length = 608
Score = 92.3 bits (195), Expect(3) = 1e-021
Identities = 38/55 (69%), Positives = 45/55 (81%)
Frame = -3 / -3
Query: 523 RDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL*TDLMSVS 359
R DPEAKRRRR+A+YNVFA+Q R+K++VR S KWLKSK SDVRYGGL* + S
Sbjct: 600 RTDPEAKRRRRLASYNVFASQARLKSSVRGSFKWLKSKLSDVRYGGL*NFFLPAS 436
Score = 25.4 bits (49), Expect(3) = 1e-021
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1 / -2
Query: 324 HTYMCMHEPWCSYICNYICTRKLYACQ 244
+ Y+ MHE C +C C Y C+
Sbjct: 406 YIYVHMHEGVCMCVCCCCCCCCCYTCR 326
Score = 24.9 bits (48), Expect(3) = 1e-021
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1 / -1
Query: 60 HALCFDLVRLFSSPQKKKKK 1
HALCF ++ SP K +K
Sbjct: 98 HALCFSSMKNLCSPLSKNEK 39
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 272,955,706
Number of Sequences: 312970
Number of extensions: 3828217
Number of successful extensions: 57873
Number of sequences better than 1.0e-020: 22
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7507757493
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)