TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5352090.2.1
(915 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE558795.1|BE558795 HV_CEb0020G12f Hordeum vulgare seedl... 172 6e-068
gb|BQ758625.1|BQ758625 EBma07_SQ002_G09_R maternal, 21 DPA,... 172 6e-068
gb|BQ758546.1|BQ758546 EBma07_SQ002_G03_R maternal, 21 DPA,... 172 6e-068
gb|CA030194.1|CA030194 HX06F18r HX Hordeum vulgare subsp. v... 172 6e-068
gb|BQ758717.1|BQ758717 EBma07_SQ002_I14_R maternal, 21 DPA,... 172 6e-068
gb|CA025237.1|CA025237 HZ51O06r HZ Hordeum vulgare subsp. v... 172 6e-068
gb|BI779229.2|BI779229 EBro01_SQ003_G07_R root, 3 week, hyd... 149 6e-066
gb|BQ760943.1|BQ760943 EBro03_SQ003_O16_R root, 3 week, wat... 164 2e-065
gb|CA008548.1|CA008548 HU11E24r HU Hordeum vulgare subsp. v... 121 1e-056
gb|BF626517.2|BF626517 HVSMEa0018J24f Hordeum vulgare seedl... 143 2e-044
gb|CA032790.1|CA032790 HX14D10r HX Hordeum vulgare subsp. v... 85 9e-031
gb|AL506334.1|AL506334 AL506334 Hordeum vulgare Barke devel... 62 1e-025
gb|BQ765720.1|BQ765720 EBro03_SQ008_A02_R root, 3 week, wat... 62 1e-025
gb|BU998550.1|BU998550 HI11G16r HI Hordeum vulgare subsp. v... 62 1e-025
gb|BM099579.2|BM099579 EBes01_SQ003_K13_R embryo sac, 4-6 D... 59 1e-025
gb|BM817109.1|BM817109 HC02A08_T3.ab1 HC Hordeum vulgare su... 65 5e-022
gb|BF621611.1|BF621611 HVSMEa0011J15f Hordeum vulgare seedl... 55 2e-021
gb|BU997001.1|BU997001 HI06J07r HI Hordeum vulgare subsp. v... 66 6e-021
gb|BF617544.2|BF617544 HVSMEc0017O16f Hordeum vulgare seedl... 69 8e-021
>gb|BE558795.1|BE558795 HV_CEb0020G12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020G12f, mRNA sequence
Length = 823
Score = 172 bits (371), Expect(2) = 6e-068
Identities = 74/91 (81%), Positives = 80/91 (87%)
Frame = +2 / +2
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKDASYLLDAQSGMSVSPR 583
++ K ILRTMGVKGLTLFHLKSHLQKYR+GKQ+GKE EQSKD SYLLDAQ GMS+SPR
Sbjct: 284 KATPKTILRTMGVKGLTLFHLKSHLQKYRMGKQTGKETPEQSKDGSYLLDAQGGMSLSPR 463
Query: 584 VPAQDMKESQEVKEALRAQMEVQRRLHEQVE 676
V QD KESQEVKEALRAQME+QR LHEQVE
Sbjct: 464 VSTQDAKESQEVKEALRAQMEMQRSLHEQVE 556
Score = 123 bits (264), Expect(2) = 2e-051
Identities = 62/85 (72%), Positives = 62/85 (72%)
Frame = -1 / -2
Query: 675 STCSCSLLWTSICALSASLTSWLSFISWAGTLGDTLIPL*ASRR*DASLDCSDPSLPDCF 496
STCSC L SICAL ASLTS LSF S T GD LIP *ASRR*D SLDCS SLP CF
Sbjct: 555 STCSCRLRCISICALRASLTS*LSFAS*VETRGDRLIPP*ASRR*DPSLDCSGVSLPVCF 376
Query: 495 PNLYF*RWLFK*KRVRPLTPIVLKI 421
P LYF*R LFK K V P TPIVLKI
Sbjct: 375 PILYF*R*LFKWKSVSPFTPIVLKI 301
Score = 122 bits (261), Expect(3) = 8e-052
Identities = 59/94 (62%), Positives = 63/94 (67%)
Frame = -3 / -1
Query: 676 LHLFMQSSLDFHLRSQCFFNFLAFFHILGRNSRGHAHSTLSI*KIGCIFXXXXXXXXXLF 497
LHLFMQ+SL HL SQ FFNFL FF IL RNS AHSTLSI KIG IF LF
Sbjct: 556 LHLFMQASLHLHLCSQGFFNFLTFFCILSRNSGRQAHSTLSIKKIGPIFRLLRRLFASLF 377
Query: 496 P*SVFLKMALQVKKSKTLDAHCP*DIFGVAFSGP 395
P SVFLKM LQV+K ++L HCP*D F F GP
Sbjct: 376 PHSVFLKMTLQVEKCESLYTHCP*DSFWCCFLGP 275
Score = 111 bits (237), Expect(3) = 2e-036
Identities = 53/95 (55%), Positives = 60/95 (63%)
Frame = +3 / +3
Query: 396 GPEKATPKIS*GQWASRVLLFFT*RAIFRNTD*GNNLVRRDQSNLKMHPIF*MLKVE*AC 575
GP K K+S*GQW R F T*R IFRNT+ GN L +R +SNLKM PIF MLKVE*AC
Sbjct: 276 GPRKQHQKLS*GQWV*RDSHFST*RVIFRNTEWGNKLAKRRRSNLKMGPIFLMLKVE*AC 455
Query: 576 PLEFLPRIXXXXXXXXXH*ERRWKSKEDCMNKWSS 680
EFL ++ *E RW+ E CMNKW S
Sbjct: 456 LPEFLLKMQKKVKKLKKP*EHRWRCNEACMNKWRS 560
Score = 105 bits (224), Expect(2) = 6e-068
Identities = 43/51 (84%), Positives = 43/51 (84%)
Frame = +3 / +2
Query: 267 PGDGATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
PG G G PSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK
Sbjct: 146 PGPGEVPRSGGAPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 298
Score = 99.6 bits (211), Expect(2) = 2e-051
Identities = 41/55 (74%), Positives = 43/55 (78%)
Frame = -3 / -2
Query: 421 IFGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPERVAPSPGTGA 257
+FGVAFSGPPSWATASTKRSWRSAV R GLGSAVSTRLG P +P PG A
Sbjct: 300 VFGVAFSGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSA 136
Score = 75.3 bits (158), Expect(3) = 8e-052
Identities = 29/41 (70%), Positives = 33/41 (80%)
Frame = -2 / -1
Query: 419 FWCCFLGSAELGHGVDETLVEVGRPPQPGLGVRRQYKARPA 297
FWCCFLG AELG GVDE LVEVGRP + GLGV R+++A A
Sbjct: 298 FWCCFLGPAELGDGVDEALVEVGRPAEAGLGVSREHEAGSA 176
Score = 45.1 bits (92), Expect(3) = 8e-052
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = -3 / -2
Query: 292 PERVAPSPGTGASGRWWIRPGGNI 221
P SPG G S RWWIRPGGNI
Sbjct: 177 PPERGTSPGPGPSARWWIRPGGNI 106
Score = 42.8 bits (87), Expect(3) = 2e-036
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +3 / +2
Query: 222 MFPPGLIHHRPDAPVPGDGATRSGPGGPSLVLTADPKPR 338
MFPPGLIHHR D P PG+ G L P+ R
Sbjct: 107 MFPPGLIHHRADGPGPGEVPRSGGAPSLVLTADPKPRLR 223
Score = 36.3 bits (73), Expect(3) = 2e-036
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1 / +3
Query: 319 RRTPSPGCGGRXXXXXXXXXXXXXXADPRKQHQK 420
R TPSP GR A PRKQHQK
Sbjct: 198 RLTPSPASAGRPTSTSASSTPSPSSAGPRKQHQK 299
>gb|BQ758625.1|BQ758625 EBma07_SQ002_G09_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_G09 5', mRNA sequence
Length = 686
Score = 172 bits (371), Expect(2) = 6e-068
Identities = 74/91 (81%), Positives = 80/91 (87%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKDASYLLDAQSGMSVSPR 583
++ K ILRTMGVKGLTLFHLKSHLQKYR+GKQ+GKE EQSKD SYLLDAQ GMS+SPR
Sbjct: 157 KATPKTILRTMGVKGLTLFHLKSHLQKYRMGKQTGKETPEQSKDGSYLLDAQGGMSLSPR 336
Query: 584 VPAQDMKESQEVKEALRAQMEVQRRLHEQVE 676
V QD KESQEVKEALRAQME+QR LHEQVE
Sbjct: 337 VSTQDAKESQEVKEALRAQMEMQRSLHEQVE 429
Score = 123 bits (264), Expect(2) = 2e-051
Identities = 62/85 (72%), Positives = 62/85 (72%)
Frame = -1 / -1
Query: 675 STCSCSLLWTSICALSASLTSWLSFISWAGTLGDTLIPL*ASRR*DASLDCSDPSLPDCF 496
STCSC L SICAL ASLTS LSF S T GD LIP *ASRR*D SLDCS SLP CF
Sbjct: 428 STCSCRLRCISICALRASLTS*LSFAS*VETRGDRLIPP*ASRR*DPSLDCSGVSLPVCF 249
Query: 495 PNLYF*RWLFK*KRVRPLTPIVLKI 421
P LYF*R LFK K V P TPIVLKI
Sbjct: 248 PILYF*R*LFKWKSVSPFTPIVLKI 174
Score = 122 bits (261), Expect(3) = 5e-045
Identities = 59/94 (62%), Positives = 63/94 (67%)
Frame = -3 / -3
Query: 676 LHLFMQSSLDFHLRSQCFFNFLAFFHILGRNSRGHAHSTLSI*KIGCIFXXXXXXXXXLF 497
LHLFMQ+SL HL SQ FFNFL FF IL RNS AHSTLSI KIG IF LF
Sbjct: 429 LHLFMQASLHLHLCSQGFFNFLTFFCILSRNSGRQAHSTLSIKKIGPIFRLLRRLFASLF 250
Query: 496 P*SVFLKMALQVKKSKTLDAHCP*DIFGVAFSGP 395
P SVFLKM LQV+K ++L HCP*D F F GP
Sbjct: 249 PHSVFLKMTLQVEKCESLYTHCP*DSFWCCFLGP 148
Score = 111 bits (237), Expect(3) = 4e-031
Identities = 53/95 (55%), Positives = 60/95 (63%)
Frame = +3 / +2
Query: 396 GPEKATPKIS*GQWASRVLLFFT*RAIFRNTD*GNNLVRRDQSNLKMHPIF*MLKVE*AC 575
GP K K+S*GQW R F T*R IFRNT+ GN L +R +SNLKM PIF MLKVE*AC
Sbjct: 149 GPRKQHQKLS*GQWV*RDSHFST*RVIFRNTEWGNKLAKRRRSNLKMGPIFLMLKVE*AC 328
Query: 576 PLEFLPRIXXXXXXXXXH*ERRWKSKEDCMNKWSS 680
EFL ++ *E RW+ E CMNKW S
Sbjct: 329 LPEFLLKMQKKVKKLKKP*EHRWRCNEACMNKWRS 433
Score = 105 bits (224), Expect(2) = 6e-068
Identities = 43/51 (84%), Positives = 43/51 (84%)
Frame = +3 / +1
Query: 267 PGDGATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
PG G G PSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK
Sbjct: 19 PGPGEVPRSGGAPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 171
Score = 99.6 bits (211), Expect(2) = 2e-051
Identities = 41/55 (74%), Positives = 43/55 (78%)
Frame = -3 / -1
Query: 421 IFGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPERVAPSPGTGA 257
+FGVAFSGPPSWATASTKRSWRSAV R GLGSAVSTRLG P +P PG A
Sbjct: 173 VFGVAFSGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSA 9
Score = 74.8 bits (157), Expect(3) = 5e-045
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = -2 / -3
Query: 419 FWCCFLGSAELGHGVDETLVEVGRPPQPGLGVRRQYKA 306
FWCCFLG AELG GVDE LVEVGRP + GLGV R+++A
Sbjct: 171 FWCCFLGPAELGDGVDEALVEVGRPAEAGLGVSREHEA 58
Score = 36.3 bits (73), Expect(3) = 4e-031
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1 / +2
Query: 319 RRTPSPGCGGRXXXXXXXXXXXXXXADPRKQHQK 420
R TPSP GR A PRKQHQK
Sbjct: 71 RLTPSPASAGRPTSTSASSTPSPSSAGPRKQHQK 172
Score = 24.9 bits (48), Expect(3) = 4e-031
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3 / +1
Query: 243 HHRPDAPVPGDGATRSGPGGPSLVLTADPKPR 338
HHR D P PG+ G L P+ R
Sbjct: 1 HHRADGPGPGEVPRSGGAPSLVLTADPKPRLR 96
Score = 22.6 bits (43), Expect(3) = 5e-045
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -3 / -1
Query: 292 PERVAPSPGTGASGRW 245
P SPG G S RW
Sbjct: 50 PPERGTSPGPGPSARW 3
>gb|BQ758546.1|BQ758546 EBma07_SQ002_G03_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_G03 5', mRNA sequence
Length = 678
Score = 172 bits (371), Expect(2) = 6e-068
Identities = 74/91 (81%), Positives = 80/91 (87%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKDASYLLDAQSGMSVSPR 583
++ K ILRTMGVKGLTLFHLKSHLQKYR+GKQ+GKE EQSKD SYLLDAQ GMS+SPR
Sbjct: 157 KATPKTILRTMGVKGLTLFHLKSHLQKYRMGKQTGKETPEQSKDGSYLLDAQGGMSLSPR 336
Query: 584 VPAQDMKESQEVKEALRAQMEVQRRLHEQVE 676
V QD KESQEVKEALRAQME+QR LHEQVE
Sbjct: 337 VSTQDAKESQEVKEALRAQMEMQRSLHEQVE 429
Score = 123 bits (264), Expect(2) = 2e-051
Identities = 62/85 (72%), Positives = 62/85 (72%)
Frame = -1 / -2
Query: 675 STCSCSLLWTSICALSASLTSWLSFISWAGTLGDTLIPL*ASRR*DASLDCSDPSLPDCF 496
STCSC L SICAL ASLTS LSF S T GD LIP *ASRR*D SLDCS SLP CF
Sbjct: 428 STCSCRLRCISICALRASLTS*LSFAS*VETRGDRLIPP*ASRR*DPSLDCSGVSLPVCF 249
Query: 495 PNLYF*RWLFK*KRVRPLTPIVLKI 421
P LYF*R LFK K V P TPIVLKI
Sbjct: 248 PILYF*R*LFKWKSVSPFTPIVLKI 174
Score = 122 bits (261), Expect(3) = 5e-045
Identities = 59/94 (62%), Positives = 63/94 (67%)
Frame = -3 / -1
Query: 676 LHLFMQSSLDFHLRSQCFFNFLAFFHILGRNSRGHAHSTLSI*KIGCIFXXXXXXXXXLF 497
LHLFMQ+SL HL SQ FFNFL FF IL RNS AHSTLSI KIG IF LF
Sbjct: 429 LHLFMQASLHLHLCSQGFFNFLTFFCILSRNSGRQAHSTLSIKKIGPIFRLLRRLFASLF 250
Query: 496 P*SVFLKMALQVKKSKTLDAHCP*DIFGVAFSGP 395
P SVFLKM LQV+K ++L HCP*D F F GP
Sbjct: 249 PHSVFLKMTLQVEKCESLYTHCP*DSFWCCFLGP 148
Score = 111 bits (237), Expect(3) = 4e-031
Identities = 53/95 (55%), Positives = 60/95 (63%)
Frame = +3 / +2
Query: 396 GPEKATPKIS*GQWASRVLLFFT*RAIFRNTD*GNNLVRRDQSNLKMHPIF*MLKVE*AC 575
GP K K+S*GQW R F T*R IFRNT+ GN L +R +SNLKM PIF MLKVE*AC
Sbjct: 149 GPRKQHQKLS*GQWV*RDSHFST*RVIFRNTEWGNKLAKRRRSNLKMGPIFLMLKVE*AC 328
Query: 576 PLEFLPRIXXXXXXXXXH*ERRWKSKEDCMNKWSS 680
EFL ++ *E RW+ E CMNKW S
Sbjct: 329 LPEFLLKMQKKVKKLKKP*EHRWRCNEACMNKWRS 433
Score = 105 bits (224), Expect(2) = 6e-068
Identities = 43/51 (84%), Positives = 43/51 (84%)
Frame = +3 / +1
Query: 267 PGDGATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
PG G G PSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK
Sbjct: 19 PGPGEVPRSGGAPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 171
Score = 99.6 bits (211), Expect(2) = 2e-051
Identities = 41/55 (74%), Positives = 43/55 (78%)
Frame = -3 / -2
Query: 421 IFGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPERVAPSPGTGA 257
+FGVAFSGPPSWATASTKRSWRSAV R GLGSAVSTRLG P +P PG A
Sbjct: 173 VFGVAFSGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSA 9
Score = 74.8 bits (157), Expect(3) = 5e-045
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = -2 / -1
Query: 419 FWCCFLGSAELGHGVDETLVEVGRPPQPGLGVRRQYKA 306
FWCCFLG AELG GVDE LVEVGRP + GLGV R+++A
Sbjct: 171 FWCCFLGPAELGDGVDEALVEVGRPAEAGLGVSREHEA 58
Score = 36.3 bits (73), Expect(3) = 4e-031
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1 / +2
Query: 319 RRTPSPGCGGRXXXXXXXXXXXXXXADPRKQHQK 420
R TPSP GR A PRKQHQK
Sbjct: 71 RLTPSPASAGRPTSTSASSTPSPSSAGPRKQHQK 172
Score = 24.9 bits (48), Expect(3) = 4e-031
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3 / +1
Query: 243 HHRPDAPVPGDGATRSGPGGPSLVLTADPKPR 338
HHR D P PG+ G L P+ R
Sbjct: 1 HHRADGPGPGEVPRSGGAPSLVLTADPKPRLR 96
Score = 22.6 bits (43), Expect(3) = 5e-045
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -3 / -2
Query: 292 PERVAPSPGTGASGRW 245
P SPG G S RW
Sbjct: 50 PPERGTSPGPGPSARW 3
>gb|CA030194.1|CA030194 HX06F18r HX Hordeum vulgare subsp. vulgare cDNA clone HX06F18
5-PRIME, mRNA sequence
Length = 639
Score = 172 bits (371), Expect(2) = 6e-068
Identities = 74/91 (81%), Positives = 80/91 (87%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKDASYLLDAQSGMSVSPR 583
++ K ILRTMGVKGLTLFHLKSHLQKYR+GKQ+GKE EQSKD SYLLDAQ GMS+SPR
Sbjct: 253 KATPKTILRTMGVKGLTLFHLKSHLQKYRMGKQTGKETPEQSKDGSYLLDAQGGMSLSPR 432
Query: 584 VPAQDMKESQEVKEALRAQMEVQRRLHEQVE 676
V QD KESQEVKEALRAQME+QR LHEQVE
Sbjct: 433 VSTQDAKESQEVKEALRAQMEMQRSLHEQVE 525
Score = 123 bits (264), Expect(2) = 2e-051
Identities = 62/85 (72%), Positives = 62/85 (72%)
Frame = -1 / -2
Query: 675 STCSCSLLWTSICALSASLTSWLSFISWAGTLGDTLIPL*ASRR*DASLDCSDPSLPDCF 496
STCSC L SICAL ASLTS LSF S T GD LIP *ASRR*D SLDCS SLP CF
Sbjct: 524 STCSCRLRCISICALRASLTS*LSFAS*VETRGDRLIPP*ASRR*DPSLDCSGVSLPVCF 345
Query: 495 PNLYF*RWLFK*KRVRPLTPIVLKI 421
P LYF*R LFK K V P TPIVLKI
Sbjct: 344 PILYF*R*LFKWKSVSPFTPIVLKI 270
Score = 122 bits (261), Expect(3) = 1e-051
Identities = 59/94 (62%), Positives = 63/94 (67%)
Frame = -3 / -1
Query: 676 LHLFMQSSLDFHLRSQCFFNFLAFFHILGRNSRGHAHSTLSI*KIGCIFXXXXXXXXXLF 497
LHLFMQ+SL HL SQ FFNFL FF IL RNS AHSTLSI KIG IF LF
Sbjct: 525 LHLFMQASLHLHLCSQGFFNFLTFFCILSRNSGRQAHSTLSIKKIGPIFRLLRRLFASLF 346
Query: 496 P*SVFLKMALQVKKSKTLDAHCP*DIFGVAFSGP 395
P SVFLKM LQV+K ++L HCP*D F F GP
Sbjct: 345 PHSVFLKMTLQVEKCESLYTHCP*DSFWCCFLGP 244
Score = 111 bits (237), Expect(4) = 2e-036
Identities = 53/95 (55%), Positives = 60/95 (63%)
Frame = +3 / +2
Query: 396 GPEKATPKIS*GQWASRVLLFFT*RAIFRNTD*GNNLVRRDQSNLKMHPIF*MLKVE*AC 575
GP K K+S*GQW R F T*R IFRNT+ GN L +R +SNLKM PIF MLKVE*AC
Sbjct: 245 GPRKQHQKLS*GQWV*RDSHFST*RVIFRNTEWGNKLAKRRRSNLKMGPIFLMLKVE*AC 424
Query: 576 PLEFLPRIXXXXXXXXXH*ERRWKSKEDCMNKWSS 680
EFL ++ *E RW+ E CMNKW S
Sbjct: 425 LPEFLLKMQKKVKKLKKP*EHRWRCNEACMNKWRS 529
Score = 105 bits (224), Expect(2) = 6e-068
Identities = 43/51 (84%), Positives = 43/51 (84%)
Frame = +3 / +1
Query: 267 PGDGATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
PG G G PSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK
Sbjct: 115 PGPGEVPRSGGAPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 267
Score = 99.6 bits (211), Expect(2) = 2e-051
Identities = 41/55 (74%), Positives = 43/55 (78%)
Frame = -3 / -2
Query: 421 IFGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPERVAPSPGTGA 257
+FGVAFSGPPSWATASTKRSWRSAV R GLGSAVSTRLG P +P PG A
Sbjct: 269 VFGVAFSGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSA 105
Score = 74.8 bits (157), Expect(3) = 1e-051
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = -2 / -1
Query: 419 FWCCFLGSAELGHGVDETLVEVGRPPQPGLGVRRQYKA 306
FWCCFLG AELG GVDE LVEVGRP + GLGV R+++A
Sbjct: 267 FWCCFLGPAELGDGVDEALVEVGRPAEAGLGVSREHEA 154
Score = 45.1 bits (92), Expect(3) = 1e-051
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = -3 / -2
Query: 292 PERVAPSPGTGASGRWWIRPGGNI 221
P SPG G S RWWIRPGGNI
Sbjct: 146 PPERGTSPGPGPSARWWIRPGGNI 75
Score = 42.8 bits (87), Expect(4) = 2e-036
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +3 / +1
Query: 222 MFPPGLIHHRPDAPVPGDGATRSGPGGPSLVLTADPKPR 338
MFPPGLIHHR D P PG+ G L P+ R
Sbjct: 76 MFPPGLIHHRADGPGPGEVPRSGGAPSLVLTADPKPRLR 192
Score = 36.3 bits (73), Expect(4) = 2e-036
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1 / +2
Query: 319 RRTPSPGCGGRXXXXXXXXXXXXXXADPRKQHQK 420
R TPSP GR A PRKQHQK
Sbjct: 167 RLTPSPASAGRPTSTSASSTPSPSSAGPRKQHQK 268
Score = 21.7 bits (41), Expect(4) = 2e-036
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3 / +2
Query: 90 KGREKAEGLFLGLDPSLLG 146
+GR + L L L SLLG
Sbjct: 8 RGRRRRRSLSLSLSTSLLG 64
>gb|BQ758717.1|BQ758717 EBma07_SQ002_I14_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_I14 5', mRNA sequence
Length = 592
Score = 172 bits (371), Expect(2) = 6e-068
Identities = 74/91 (81%), Positives = 80/91 (87%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKDASYLLDAQSGMSVSPR 583
++ K ILRTMGVKGLTLFHLKSHLQKYR+GKQ+GKE EQSKD SYLLDAQ GMS+SPR
Sbjct: 157 KATPKTILRTMGVKGLTLFHLKSHLQKYRMGKQTGKETPEQSKDGSYLLDAQGGMSLSPR 336
Query: 584 VPAQDMKESQEVKEALRAQMEVQRRLHEQVE 676
V QD KESQEVKEALRAQME+QR LHEQVE
Sbjct: 337 VSTQDAKESQEVKEALRAQMEMQRSLHEQVE 429
Score = 123 bits (264), Expect(2) = 2e-051
Identities = 62/85 (72%), Positives = 62/85 (72%)
Frame = -1 / -3
Query: 675 STCSCSLLWTSICALSASLTSWLSFISWAGTLGDTLIPL*ASRR*DASLDCSDPSLPDCF 496
STCSC L SICAL ASLTS LSF S T GD LIP *ASRR*D SLDCS SLP CF
Sbjct: 428 STCSCRLRCISICALRASLTS*LSFAS*VETRGDRLIPP*ASRR*DPSLDCSGVSLPVCF 249
Query: 495 PNLYF*RWLFK*KRVRPLTPIVLKI 421
P LYF*R LFK K V P TPIVLKI
Sbjct: 248 PILYF*R*LFKWKSVSPFTPIVLKI 174
Score = 122 bits (261), Expect(3) = 5e-045
Identities = 59/94 (62%), Positives = 63/94 (67%)
Frame = -3 / -2
Query: 676 LHLFMQSSLDFHLRSQCFFNFLAFFHILGRNSRGHAHSTLSI*KIGCIFXXXXXXXXXLF 497
LHLFMQ+SL HL SQ FFNFL FF IL RNS AHSTLSI KIG IF LF
Sbjct: 429 LHLFMQASLHLHLCSQGFFNFLTFFCILSRNSGRQAHSTLSIKKIGPIFRLLRRLFASLF 250
Query: 496 P*SVFLKMALQVKKSKTLDAHCP*DIFGVAFSGP 395
P SVFLKM LQV+K ++L HCP*D F F GP
Sbjct: 249 PHSVFLKMTLQVEKCESLYTHCP*DSFWCCFLGP 148
Score = 111 bits (237), Expect(3) = 4e-031
Identities = 53/95 (55%), Positives = 60/95 (63%)
Frame = +3 / +2
Query: 396 GPEKATPKIS*GQWASRVLLFFT*RAIFRNTD*GNNLVRRDQSNLKMHPIF*MLKVE*AC 575
GP K K+S*GQW R F T*R IFRNT+ GN L +R +SNLKM PIF MLKVE*AC
Sbjct: 149 GPRKQHQKLS*GQWV*RDSHFST*RVIFRNTEWGNKLAKRRRSNLKMGPIFLMLKVE*AC 328
Query: 576 PLEFLPRIXXXXXXXXXH*ERRWKSKEDCMNKWSS 680
EFL ++ *E RW+ E CMNKW S
Sbjct: 329 LPEFLLKMQKKVKKLKKP*EHRWRCNEACMNKWRS 433
Score = 105 bits (224), Expect(2) = 6e-068
Identities = 43/51 (84%), Positives = 43/51 (84%)
Frame = +3 / +1
Query: 267 PGDGATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
PG G G PSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK
Sbjct: 19 PGPGEVPRSGGAPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 171
Score = 99.6 bits (211), Expect(2) = 2e-051
Identities = 41/55 (74%), Positives = 43/55 (78%)
Frame = -3 / -3
Query: 421 IFGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPERVAPSPGTGA 257
+FGVAFSGPPSWATASTKRSWRSAV R GLGSAVSTRLG P +P PG A
Sbjct: 173 VFGVAFSGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSA 9
Score = 74.8 bits (157), Expect(3) = 5e-045
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = -2 / -2
Query: 419 FWCCFLGSAELGHGVDETLVEVGRPPQPGLGVRRQYKA 306
FWCCFLG AELG GVDE LVEVGRP + GLGV R+++A
Sbjct: 171 FWCCFLGPAELGDGVDEALVEVGRPAEAGLGVSREHEA 58
Score = 36.3 bits (73), Expect(3) = 4e-031
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1 / +2
Query: 319 RRTPSPGCGGRXXXXXXXXXXXXXXADPRKQHQK 420
R TPSP GR A PRKQHQK
Sbjct: 71 RLTPSPASAGRPTSTSASSTPSPSSAGPRKQHQK 172
Score = 24.9 bits (48), Expect(3) = 4e-031
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3 / +1
Query: 243 HHRPDAPVPGDGATRSGPGGPSLVLTADPKPR 338
HHR D P PG+ G L P+ R
Sbjct: 1 HHRADGPGPGEVPRSGGAPSLVLTADPKPRLR 96
Score = 22.6 bits (43), Expect(3) = 5e-045
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -3 / -3
Query: 292 PERVAPSPGTGASGRW 245
P SPG G S RW
Sbjct: 50 PPERGTSPGPGPSARW 3
>gb|CA025237.1|CA025237 HZ51O06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51O06
5-PRIME, mRNA sequence
Length = 578
Score = 172 bits (371), Expect(2) = 6e-068
Identities = 74/91 (81%), Positives = 80/91 (87%)
Frame = +2 / +2
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKDASYLLDAQSGMSVSPR 583
++ K ILRTMGVKGLTLFHLKSHLQKYR+GKQ+GKE EQSKD SYLLDAQ GMS+SPR
Sbjct: 236 KATPKTILRTMGVKGLTLFHLKSHLQKYRMGKQTGKETPEQSKDGSYLLDAQGGMSLSPR 415
Query: 584 VPAQDMKESQEVKEALRAQMEVQRRLHEQVE 676
V QD KESQEVKEALRAQME+QR LHEQVE
Sbjct: 416 VSTQDAKESQEVKEALRAQMEMQRSLHEQVE 508
Score = 123 bits (264), Expect(2) = 2e-051
Identities = 62/85 (72%), Positives = 62/85 (72%)
Frame = -1 / -3
Query: 675 STCSCSLLWTSICALSASLTSWLSFISWAGTLGDTLIPL*ASRR*DASLDCSDPSLPDCF 496
STCSC L SICAL ASLTS LSF S T GD LIP *ASRR*D SLDCS SLP CF
Sbjct: 507 STCSCRLRCISICALRASLTS*LSFAS*VETRGDRLIPP*ASRR*DPSLDCSGVSLPVCF 328
Query: 495 PNLYF*RWLFK*KRVRPLTPIVLKI 421
P LYF*R LFK K V P TPIVLKI
Sbjct: 327 PILYF*R*LFKWKSVSPFTPIVLKI 253
Score = 122 bits (261), Expect(3) = 1e-051
Identities = 59/94 (62%), Positives = 63/94 (67%)
Frame = -3 / -2
Query: 676 LHLFMQSSLDFHLRSQCFFNFLAFFHILGRNSRGHAHSTLSI*KIGCIFXXXXXXXXXLF 497
LHLFMQ+SL HL SQ FFNFL FF IL RNS AHSTLSI KIG IF LF
Sbjct: 508 LHLFMQASLHLHLCSQGFFNFLTFFCILSRNSGRQAHSTLSIKKIGPIFRLLRRLFASLF 329
Query: 496 P*SVFLKMALQVKKSKTLDAHCP*DIFGVAFSGP 395
P SVFLKM LQV+K ++L HCP*D F F GP
Sbjct: 328 PHSVFLKMTLQVEKCESLYTHCP*DSFWCCFLGP 227
Score = 111 bits (237), Expect(3) = 2e-036
Identities = 53/95 (55%), Positives = 60/95 (63%)
Frame = +3 / +3
Query: 396 GPEKATPKIS*GQWASRVLLFFT*RAIFRNTD*GNNLVRRDQSNLKMHPIF*MLKVE*AC 575
GP K K+S*GQW R F T*R IFRNT+ GN L +R +SNLKM PIF MLKVE*AC
Sbjct: 228 GPRKQHQKLS*GQWV*RDSHFST*RVIFRNTEWGNKLAKRRRSNLKMGPIFLMLKVE*AC 407
Query: 576 PLEFLPRIXXXXXXXXXH*ERRWKSKEDCMNKWSS 680
EFL ++ *E RW+ E CMNKW S
Sbjct: 408 LPEFLLKMQKKVKKLKKP*EHRWRCNEACMNKWRS 512
Score = 105 bits (224), Expect(2) = 6e-068
Identities = 43/51 (84%), Positives = 43/51 (84%)
Frame = +3 / +2
Query: 267 PGDGATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
PG G G PSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK
Sbjct: 98 PGPGEVPRSGGAPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 250
Score = 99.6 bits (211), Expect(2) = 2e-051
Identities = 41/55 (74%), Positives = 43/55 (78%)
Frame = -3 / -3
Query: 421 IFGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPERVAPSPGTGA 257
+FGVAFSGPPSWATASTKRSWRSAV R GLGSAVSTRLG P +P PG A
Sbjct: 252 VFGVAFSGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSA 88
Score = 74.8 bits (157), Expect(3) = 1e-051
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = -2 / -2
Query: 419 FWCCFLGSAELGHGVDETLVEVGRPPQPGLGVRRQYKA 306
FWCCFLG AELG GVDE LVEVGRP + GLGV R+++A
Sbjct: 250 FWCCFLGPAELGDGVDEALVEVGRPAEAGLGVSREHEA 137
Score = 45.1 bits (92), Expect(3) = 1e-051
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = -3 / -3
Query: 292 PERVAPSPGTGASGRWWIRPGGNI 221
P SPG G S RWWIRPGGNI
Sbjct: 129 PPERGTSPGPGPSARWWIRPGGNI 58
Score = 42.8 bits (87), Expect(3) = 2e-036
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +3 / +2
Query: 222 MFPPGLIHHRPDAPVPGDGATRSGPGGPSLVLTADPKPR 338
MFPPGLIHHR D P PG+ G L P+ R
Sbjct: 59 MFPPGLIHHRADGPGPGEVPRSGGAPSLVLTADPKPRLR 175
Score = 36.3 bits (73), Expect(3) = 2e-036
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1 / +3
Query: 319 RRTPSPGCGGRXXXXXXXXXXXXXXADPRKQHQK 420
R TPSP GR A PRKQHQK
Sbjct: 150 RLTPSPASAGRPTSTSASSTPSPSSAGPRKQHQK 251
>gb|BI779229.2|BI779229 EBro01_SQ003_G07_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_G07 5', mRNA sequence
Length = 446
Score = 149 bits (320), Expect(3) = 6e-066
Identities = 64/80 (80%), Positives = 69/80 (86%)
Frame = +2 / +3
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKDASYLLDAQSGMSVSPR 583
++ K ILR MGVKGLTLFHLKSHLQKYR+GKQ+GKE EQSKD SYLLDAQ GMS+SPR
Sbjct: 207 KATPKTILRAMGVKGLTLFHLKSHLQKYRMGKQTGKETPEQSKDGSYLLDAQGGMSLSPR 386
Query: 584 VPAQDMKESQEVKEALRAQM 643
V QD KESQEVKEALRAQM
Sbjct: 387 VSTQDAKESQEVKEALRAQM 446
Score = 106 bits (227), Expect(3) = 3e-046
Identities = 54/74 (72%), Positives = 54/74 (72%)
Frame = -1 / -2
Query: 642 ICALSASLTSWLSFISWAGTLGDTLIPL*ASRR*DASLDCSDPSLPDCFPNLYF*RWLFK 463
ICAL ASLTS LSF S T GD LIP *ASRR*D SLDCS SLP CFP LYF*R LFK
Sbjct: 445 ICALRASLTS*LSFAS*VETRGDRLIPP*ASRR*DPSLDCSGVSLPVCFPILYF*R*LFK 266
Query: 462 *KRVRPLTPIVLKI 421
K V P TPI LKI
Sbjct: 265 WKSVSPFTPIALKI 224
Score = 101 bits (215), Expect(2) = 7e-043
Identities = 50/83 (60%), Positives = 53/83 (63%)
Frame = -3 / -1
Query: 643 HLRSQCFFNFLAFFHILGRNSRGHAHSTLSI*KIGCIFXXXXXXXXXLFP*SVFLKMALQ 464
HL SQ FFNFL FF IL RNS AHS LSI KIG IF LFP SVFLKM LQ
Sbjct: 446 HLCSQGFFNFLTFFCILSRNSGRQAHSPLSIKKIGPIFRLLRRLFASLFPHSVFLKMTLQ 267
Query: 463 VKKSKTLDAHCP*DIFGVAFSGP 395
V+K ++L HCP*D F F GP
Sbjct: 266 VEKCESLYTHCP*DSFWCCFLGP 198
Score = 99.6 bits (211), Expect(3) = 6e-066
Identities = 40/51 (78%), Positives = 40/51 (78%)
Frame = +3 / +3
Query: 267 PGDGATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
PG G G PSLVLT DPKPRLRW DLHERFVDAVAQLGGPEKATPK
Sbjct: 69 PGPGEVPRSGGAPSLVLTGDPKPRLRWAGDLHERFVDAVAQLGGPEKATPK 221
Score = 93.2 bits (197), Expect(2) = 7e-043
Identities = 38/55 (69%), Positives = 40/55 (72%)
Frame = -3 / -2
Query: 421 IFGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPERVAPSPGTGA 257
+FGVAFSGPPSWATASTKRSWRS R GLGS VSTRLG P +P PG A
Sbjct: 223 VFGVAFSGPPSWATASTKRSWRSPAQRRRGLGSPVSTRLGAPPERGTSPGPGPSA 59
Score = 83.5 bits (176), Expect(3) = 2e-022
Identities = 41/65 (63%), Positives = 45/65 (69%)
Frame = +3 / +1
Query: 396 GPEKATPKIS*GQWASRVLLFFT*RAIFRNTD*GNNLVRRDQSNLKMHPIF*MLKVE*AC 575
GP K K+S*GQW R F T*R IFRNT+ GN L +R +SNLKM PIF MLK E*AC
Sbjct: 199 GPRKQHQKLS*GQWV*RDSHFST*RVIFRNTEWGNKLAKRRRSNLKMGPIFLMLKGE*AC 378
Query: 576 PLEFL 590
EFL
Sbjct: 379 LPEFL 393
Score = 72.1 bits (151), Expect(3) = 3e-046
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = -2 / -1
Query: 419 FWCCFLGSAELGHGVDETLVEVGRPPQPGLGVRRQYKA 306
FWCCFLG AELG GVDE LVEV RP + GLGV R+++A
Sbjct: 221 FWCCFLGPAELGDGVDEALVEVARPAEAGLGVTREHEA 108
Score = 45.1 bits (92), Expect(3) = 3e-046
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = -3 / -2
Query: 292 PERVAPSPGTGASGRWWIRPGGNI 221
P SPG G S RWWIRPGGNI
Sbjct: 100 PPERGTSPGPGPSARWWIRPGGNI 29
Score = 41.4 bits (84), Expect(3) = 6e-066
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +3 / +3
Query: 222 MFPPGLIHHRPDAPVPGD 275
MFPPGLIHHR D P PG+
Sbjct: 30 MFPPGLIHHRADGPGPGE 83
Score = 36.8 bits (74), Expect(3) = 2e-022
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1 / +1
Query: 319 RRTPSPGCGGRXXXXXXXXXXXXXXADPRKQHQK 420
R TPSP GR A PRKQHQK
Sbjct: 121 RVTPSPASAGRATSTSASSTPSPSSAGPRKQHQK 222
Score = 22.6 bits (43), Expect(3) = 2e-022
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1 / +1
Query: 232 LA*STTALTPPFPAMGRHAPAP 297
LA*STTA T PA R AP
Sbjct: 40 LA*STTARTARGPARCRAPAAP 105
>gb|BQ760943.1|BQ760943 EBro03_SQ003_O16_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_O16 5', mRNA sequence
Length = 540
Score = 164 bits (352), Expect(2) = 2e-065
Identities = 70/87 (80%), Positives = 76/87 (87%)
Frame = +2 / +3
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKDASYLLDAQSGMSVSPR 583
++ K ILRTMGVKGLTLFHLKSHLQKYR+GKQ+GKE EQSKD SYLLDAQ GMS+SPR
Sbjct: 210 KATPKTILRTMGVKGLTLFHLKSHLQKYRMGKQTGKETPEQSKDGSYLLDAQGGMSLSPR 389
Query: 584 VPAQDMKESQEVKEALRAQMEVQRRLH 664
V QD KESQEVKEALRAQME+QR LH
Sbjct: 390 VSTQDAKESQEVKEALRAQMEMQRSLH 470
Score = 115 bits (246), Expect(2) = 5e-049
Identities = 59/82 (71%), Positives = 59/82 (71%)
Frame = -1 / -3
Query: 666 SCSLLWTSICALSASLTSWLSFISWAGTLGDTLIPL*ASRR*DASLDCSDPSLPDCFPNL 487
SC L SICAL ASLTS LSF S T GD LIP *ASRR*D SLDCS SLP CFP L
Sbjct: 472 SCRLRCISICALRASLTS*LSFAS*VETRGDRLIPP*ASRR*DPSLDCSGVSLPVCFPIL 293
Query: 486 YF*RWLFK*KRVRPLTPIVLKI 421
YF*R LFK K V P TPIVLKI
Sbjct: 292 YF*R*LFKWKSVSPFTPIVLKI 227
Score = 112 bits (239), Expect(3) = 1e-048
Identities = 55/90 (61%), Positives = 59/90 (65%)
Frame = -3 / -2
Query: 664 MQSSLDFHLRSQCFFNFLAFFHILGRNSRGHAHSTLSI*KIGCIFXXXXXXXXXLFP*SV 485
MQ+SL HL SQ FFNFL FF IL RNS AHSTLSI KIG IF LFP SV
Sbjct: 470 MQASLHLHLCSQGFFNFLTFFCILSRNSGRQAHSTLSIKKIGPIFRLLRRLFASLFPHSV 291
Query: 484 FLKMALQVKKSKTLDAHCP*DIFGVAFSGP 395
FLKM LQV+K ++L HCP*D F F GP
Sbjct: 290 FLKMTLQVEKCESLYTHCP*DSFWCCFLGP 201
Score = 105 bits (224), Expect(2) = 2e-065
Identities = 43/51 (84%), Positives = 43/51 (84%)
Frame = +3 / +3
Query: 267 PGDGATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
PG G G PSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK
Sbjct: 72 PGPGEVPRSGGAPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 224
Score = 100 bits (212), Expect(3) = 6e-033
Identities = 49/90 (54%), Positives = 56/90 (62%)
Frame = +3 / +1
Query: 396 GPEKATPKIS*GQWASRVLLFFT*RAIFRNTD*GNNLVRRDQSNLKMHPIF*MLKVE*AC 575
GP K K+S*GQW R F T*R IFRNT+ GN L +R +SNLKM PIF MLKVE*AC
Sbjct: 202 GPRKQHQKLS*GQWV*RDSHFST*RVIFRNTEWGNKLAKRRRSNLKMGPIFLMLKVE*AC 381
Query: 576 PLEFLPRIXXXXXXXXXH*ERRWKSKEDCM 665
EFL ++ *E RW+ E CM
Sbjct: 382 LPEFLLKMQKKVKKLKKP*EHRWRCNEACM 471
Score = 99.6 bits (211), Expect(2) = 5e-049
Identities = 41/55 (74%), Positives = 43/55 (78%)
Frame = -3 / -3
Query: 421 IFGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPERVAPSPGTGA 257
+FGVAFSGPPSWATASTKRSWRSAV R GLGSAVSTRLG P +P PG A
Sbjct: 226 VFGVAFSGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSA 62
Score = 74.8 bits (157), Expect(3) = 1e-048
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = -2 / -2
Query: 419 FWCCFLGSAELGHGVDETLVEVGRPPQPGLGVRRQYKA 306
FWCCFLG AELG GVDE LVEVGRP + GLGV R+++A
Sbjct: 224 FWCCFLGPAELGDGVDEALVEVGRPAEAGLGVSREHEA 111
Score = 45.1 bits (92), Expect(3) = 1e-048
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = -3 / -3
Query: 292 PERVAPSPGTGASGRWWIRPGGNI 221
P SPG G S RWWIRPGGNI
Sbjct: 103 PPERGTSPGPGPSARWWIRPGGNI 32
Score = 42.8 bits (87), Expect(3) = 6e-033
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +3 / +3
Query: 222 MFPPGLIHHRPDAPVPGDGATRSGPGGPSLVLTADPKPR 338
MFPPGLIHHR D P PG+ G L P+ R
Sbjct: 33 MFPPGLIHHRADGPGPGEVPRSGGAPSLVLTADPKPRLR 149
Score = 36.3 bits (73), Expect(3) = 6e-033
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1 / +1
Query: 319 RRTPSPGCGGRXXXXXXXXXXXXXXADPRKQHQK 420
R TPSP GR A PRKQHQK
Sbjct: 124 RLTPSPASAGRPTSTSASSTPSPSSAGPRKQHQK 225
>gb|CA008548.1|CA008548 HU11E24r HU Hordeum vulgare subsp. vulgare cDNA clone HU11E24
5-PRIME, mRNA sequence
Length = 601
Score = 121 bits (258), Expect(3) = 1e-056
Identities = 51/74 (68%), Positives = 62/74 (83%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKDASYLLDAQSGMSVSPR 583
++ K ILRTMGVKGLTLFHLKSHLQKYR+GKQ+GKE EQSKD SYLLDAQ GMS+SPR
Sbjct: 262 KATPKTILRTMGVKGLTLFHLKSHLQKYRMGKQTGKETPEQSKDGSYLLDAQGGMSLSPR 441
Query: 584 VPAQDMKESQEVKE 625
V + K+ +++K+
Sbjct: 442 VLLKMQKKVKKLKK 483
Score = 105 bits (224), Expect(3) = 1e-056
Identities = 43/51 (84%), Positives = 43/51 (84%)
Frame = +3 / +1
Query: 267 PGDGATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
PG G G PSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK
Sbjct: 124 PGPGEVPRSGGAPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 276
Score = 99.6 bits (211), Expect(3) = 4e-050
Identities = 41/55 (74%), Positives = 43/55 (78%)
Frame = -3 / -3
Query: 421 IFGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPERVAPSPGTGA 257
+FGVAFSGPPSWATASTKRSWRSAV R GLGSAVSTRLG P +P PG A
Sbjct: 278 VFGVAFSGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSA 114
Score = 86.8 bits (183), Expect(3) = 4e-050
Identities = 42/55 (76%), Positives = 42/55 (76%)
Frame = -1 / -3
Query: 585 TLGDTLIPL*ASRR*DASLDCSDPSLPDCFPNLYF*RWLFK*KRVRPLTPIVLKI 421
T GD LIP *ASRR*D SLDCS SLP CFP LYF*R LFK K V P TPIVLKI
Sbjct: 443 TRGDRLIPP*ASRR*DPSLDCSGVSLPVCFPILYF*R*LFKWKSVSPFTPIVLKI 279
Score = 86.3 bits (182), Expect(4) = 6e-041
Identities = 42/67 (62%), Positives = 46/67 (68%)
Frame = +3 / +2
Query: 396 GPEKATPKIS*GQWASRVLLFFT*RAIFRNTD*GNNLVRRDQSNLKMHPIF*MLKVE*AC 575
GP K K+S*GQW R F T*R IFRNT+ GN L +R +SNLKM PIF MLKVE*AC
Sbjct: 254 GPRKQHQKLS*GQWV*RDSHFST*RVIFRNTEWGNKLAKRRRSNLKMGPIFLMLKVE*AC 433
Query: 576 PLEFLPR 596
EF R
Sbjct: 434 LPEFYSR 454
Score = 74.8 bits (157), Expect(4) = 8e-045
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = -2 / -2
Query: 419 FWCCFLGSAELGHGVDETLVEVGRPPQPGLGVRRQYKA 306
FWCCFLG AELG GVDE LVEVGRP + GLGV R+++A
Sbjct: 276 FWCCFLGPAELGDGVDEALVEVGRPAEAGLGVSREHEA 163
Score = 74.4 bits (156), Expect(4) = 8e-045
Identities = 37/64 (57%), Positives = 40/64 (62%)
Frame = -3 / -2
Query: 586 NSRGHAHSTLSI*KIGCIFXXXXXXXXXLFP*SVFLKMALQVKKSKTLDAHCP*DIFGVA 407
NS AHSTLSI KIG IF LFP SVFLKM LQV+K ++L HCP*D F
Sbjct: 444 NSGRQAHSTLSIKKIGPIFRLLRRLFASLFPHSVFLKMTLQVEKCESLYTHCP*DSFWCC 265
Query: 406 FSGP 395
F GP
Sbjct: 264 FLGP 253
Score = 58.3 bits (121), Expect(4) = 6e-041
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +2 / +3
Query: 593 QDMKESQEVKEALRAQMEVQRRLHEQVE 676
QD KESQEVKEALRAQME+QR LHEQVE
Sbjct: 450 QDAKESQEVKEALRAQMEMQRSLHEQVE 533
Score = 51.0 bits (105), Expect(3) = 4e-050
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = -3 / -3
Query: 676 LHLFMQSSLDFHLRSQCFFNFLAFFHILGR 587
LHLFMQ+SL HL SQ FFNFL FF IL R
Sbjct: 533 LHLFMQASLHLHLCSQGFFNFLTFFCILSR 444
Score = 45.1 bits (92), Expect(4) = 8e-045
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = -3 / -3
Query: 292 PERVAPSPGTGASGRWWIRPGGNI 221
P SPG G S RWWIRPGGNI
Sbjct: 155 PPERGTSPGPGPSARWWIRPGGNI 84
Score = 42.8 bits (87), Expect(4) = 6e-041
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +3 / +1
Query: 222 MFPPGLIHHRPDAPVPGDGATRSGPGGPSLVLTADPKPR 338
MFPPGLIHHR D P PG+ G L P+ R
Sbjct: 85 MFPPGLIHHRADGPGPGEVPRSGGAPSLVLTADPKPRLR 201
Score = 42.8 bits (87), Expect(4) = 8e-045
Identities = 20/27 (74%), Positives = 20/27 (74%)
Frame = -1 / -1
Query: 675 STCSCSLLWTSICALSASLTSWLSFIS 595
STCSC L SICAL ASLTS LSF S
Sbjct: 532 STCSCRLRCISICALRASLTS*LSFAS 452
Score = 36.3 bits (73), Expect(4) = 6e-041
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1 / +2
Query: 319 RRTPSPGCGGRXXXXXXXXXXXXXXADPRKQHQK 420
R TPSP GR A PRKQHQK
Sbjct: 176 RLTPSPASAGRPTSTSASSTPSPSSAGPRKQHQK 277
Score = 32.7 bits (65), Expect(3) = 1e-056
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3 / +1
Query: 630 *ERRWKSKEDCMNKWSS 680
*E RW+ E CMNKW S
Sbjct: 487 *EHRWRCNEACMNKWRS 537
>gb|BF626517.2|BF626517 HVSMEa0018J24f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018J24f, mRNA sequence
Length = 764
Score = 143 bits (306), Expect(2) = 2e-044
Identities = 63/87 (72%), Positives = 69/87 (79%)
Frame = +2 / +3
Query: 416 KNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKDASYLLDAQSGMSVSPRVPAQ 595
K ILRTMG KGLTLFHL S+LQKY +GKQ+GKE EQSKD SYLLDAQ GMS+SP Q
Sbjct: 222 KTILRTMGEKGLTLFHLNSNLQKYTMGKQTGKETPEQSKDGSYLLDAQRGMSLSPXASTQ 401
Query: 596 DMKESQEVKEALRAQMEVQRRLHEQVE 676
D SQE K+ALRAQ E+QR LHEQVE
Sbjct: 402 DAN*SQEFKKALRAQKEMQRSLHEQVE 482
Score = 109 bits (233), Expect(2) = 2e-035
Identities = 55/85 (64%), Positives = 57/85 (67%)
Frame = -1 / -2
Query: 675 STCSCSLLWTSICALSASLTSWLSFISWAGTLGDTLIPL*ASRR*DASLDCSDPSLPDCF 496
STCSC L S CAL A L S L F S GD LIP *ASRR*D SLDCS SLP CF
Sbjct: 481 STCSCRLRCISFCALRAFLNS*L*FAS*VEAXGDRLIPR*ASRR*DPSLDCSGVSLPVCF 302
Query: 495 PNLYF*RWLFK*KRVRPLTPIVLKI 421
P +YF*R LFK K V P +PIVLKI
Sbjct: 301 PIVYF*RLLFKWKSVSPFSPIVLKI 227
Score = 98.2 bits (208), Expect(3) = 1e-032
Identities = 50/94 (53%), Positives = 57/94 (60%)
Frame = -3 / -1
Query: 676 LHLFMQSSLDFHLRSQCFFNFLAFFHILGRNSRGHAHSTLSI*KIGCIFXXXXXXXXXLF 497
LHLFMQ+SL LRSQ FF FL IL R AHSTLSI KIG IF LF
Sbjct: 482 LHLFMQASLHLLLRSQGFFKFLTLVCILSRGXGRQAHSTLSIKKIGPIFRLLRRLFASLF 303
Query: 496 P*SVFLKMALQVKKSKTLDAHCP*DIFGVAFSGP 395
P VFLK+ +QV++ ++L AHCP*D F GP
Sbjct: 302 PHCVFLKITVQVEECESLFAHCP*DSFWCCGLGP 201
Score = 60.2 bits (125), Expect(2) = 2e-035
Identities = 28/51 (54%), Positives = 31/51 (60%)
Frame = -3 / -2
Query: 421 IFGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPERVAPSP 269
+FGVA SGPPSWA A TKRS RSAV R LGLG + G R+ P
Sbjct: 226 VFGVAVSGPPSWAAAWTKRSSRSAVQRRLGLGVSREHEAGGATGARLLAGP 74
Score = 56.5 bits (117), Expect(2) = 2e-044
Identities = 26/50 (52%), Positives = 29/50 (58%)
Frame = +3 / +3
Query: 270 GDGATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
G +R+ P+ P P LR TADL ER V A AQLGGPE ATPK
Sbjct: 75 GPARSRAPVAPPASCSRLTPSPSLRCTADLDERLVHAAAQLGGPETATPK 224
Score = 49.6 bits (102), Expect(3) = 1e-032
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -2 / -1
Query: 419 FWCCFLGSAELGHGVDETLVEVGRPPQPG 333
FWCC LG A+LG GVD+ L++VGR + G
Sbjct: 224 FWCCGLGPAQLGGGVDQALIQVGRAAEAG 138
Score = 30.4 bits (60), Expect(3) = 1e-032
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3 / -3
Query: 334 GLGSAVSTRLGPPGPERVAPSP 269
GLGSAVS RLG P +P P
Sbjct: 138 GLGSAVSMRLGAPRERGSSPGP 73
>gb|CA032790.1|CA032790 HX14D10r HX Hordeum vulgare subsp. vulgare cDNA clone HX14D10
5-PRIME, mRNA sequence
Length = 563
Score = 84.9 bits (179), Expect(2) = 9e-031
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = +3 / +1
Query: 273 DGATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
D A + LVLT DPKPRLRWT +LH+RFVDAVAQLGGP+KATPK
Sbjct: 184 DRAAAAAACDSGLVLTTDPKPRLRWTVELHDRFVDAVAQLGGPDKATPK 330
Score = 68.9 bits (144), Expect(2) = 9e-031
Identities = 28/45 (62%), Positives = 34/45 (75%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKDA 538
++ K I+R MGVKGLTL+HLKSHLQK+RLGKQ + G KDA
Sbjct: 316 KATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQHKEFGDHSVKDA 450
>gb|AL506334.1|AL506334 AL506334 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02M13T 5',
mRNA sequence
Length = 700
Score = 61.6 bits (128), Expect(3) = 1e-025
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +3 / +3
Query: 300 GPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
GP+ + + RLRWT +LHE+FV+AV QLGGP++ATPK
Sbjct: 324 GPNSKASLAARQRLRWTDELHEQFVEAVTQLGGPDRATPK 443
Score = 52.4 bits (108), Expect(3) = 1e-025
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2 / +3
Query: 416 KNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSK 532
K +LR MG GLT++H+KSHLQKYRL K ++ +K
Sbjct: 441 KGVLRIMGTPGLTIYHVKSHLQKYRLAKYIPDSSADGNK 557
Score = 40.0 bits (81), Expect(3) = 1e-025
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2 / +3
Query: 596 DMKESQEVKEALRAQMEVQRRLHEQVE 676
D ++ EAL+ QMEVQ+RLHEQ+E
Sbjct: 597 DGSSGMQISEALKLQMEVQKRLHEQLE 677
>gb|BQ765720.1|BQ765720 EBro03_SQ008_A02_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_A02 5', mRNA sequence
Length = 626
Score = 61.6 bits (128), Expect(3) = 1e-025
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +3 / +1
Query: 300 GPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
GP+ + + RLRWT +LHE+FV+AV QLGGP++ATPK
Sbjct: 244 GPNSKASLAARQRLRWTDELHEQFVEAVTQLGGPDRATPK 363
Score = 52.4 bits (108), Expect(3) = 1e-025
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2 / +1
Query: 416 KNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSK 532
K +LR MG GLT++H+KSHLQKYRL K ++ +K
Sbjct: 361 KGVLRIMGTPGLTIYHVKSHLQKYRLAKYIPDSSADGNK 477
Score = 40.0 bits (81), Expect(3) = 1e-025
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2 / +1
Query: 596 DMKESQEVKEALRAQMEVQRRLHEQVE 676
D ++ EAL+ QMEVQ+RLHEQ+E
Sbjct: 517 DGSSGMQISEALKLQMEVQKRLHEQLE 597
>gb|BU998550.1|BU998550 HI11G16r HI Hordeum vulgare subsp. vulgare cDNA clone HI11G16
5-PRIME, mRNA sequence
Length = 625
Score = 61.6 bits (128), Expect(3) = 1e-025
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +3 / +1
Query: 300 GPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
GP+ + + RLRWT +LHE+FV+AV QLGGP++ATPK
Sbjct: 244 GPNSKASLAARQRLRWTDELHEQFVEAVTQLGGPDRATPK 363
Score = 52.4 bits (108), Expect(3) = 1e-025
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2 / +1
Query: 416 KNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSK 532
K +LR MG GLT++H+KSHLQKYRL K ++ +K
Sbjct: 361 KGVLRIMGTPGLTIYHVKSHLQKYRLAKYIPDSSADGNK 477
Score = 40.0 bits (81), Expect(3) = 1e-025
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2 / +1
Query: 596 DMKESQEVKEALRAQMEVQRRLHEQVE 676
D ++ EAL+ QMEVQ+RLHEQ+E
Sbjct: 517 DGSSGMQISEALKLQMEVQKRLHEQLE 597
>gb|BM099579.2|BM099579 EBes01_SQ003_K13_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ003_K13 5', mRNA sequence
Length = 602
Score = 59.3 bits (123), Expect(3) = 1e-025
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = +3 / +3
Query: 303 PSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKAT 413
PS V K RLRWT+DLH RFVDA+AQLGGP+ +
Sbjct: 174 PSSVPVRSGKQRLRWTSDLHSRFVDAIAQLGGPDSGS 284
Score = 54.7 bits (113), Expect(3) = 1e-025
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +2 / +1
Query: 416 KNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKD 535
K +L MGV G+T++H+KSHLQKYRL K + +E SK+
Sbjct: 292 KGVLTVMGVPGITIYHVKSHLQKYRLAKYIPESPAEGSKE 411
Score = 40.0 bits (81), Expect(3) = 1e-025
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2 / +1
Query: 596 DMKESQEVKEALRAQMEVQRRLHEQVE 676
D ++ EAL+ QMEVQ+RLHEQ+E
Sbjct: 448 DSAPGSQINEALKMQMEVQKRLHEQLE 528
>gb|BM817109.1|BM817109 HC02A08_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC02A08_T3.ab1 similar to (AF219972) CDPK substrate
protein 1; CSP1 [Mesembryanthemum crystallinum], mRNA
sequence
Length = 828
Score = 64.8 bits (135), Expect(2) = 5e-022
Identities = 27/91 (29%), Positives = 52/91 (57%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKDASYLLDAQSGMSVSPR 583
++ K + + M V+GLT++H+KSHLQKYR + + S + S +D ++
Sbjct: 235 KATPKAVQKVMKVEGLTIYHVKSHLQKYRTVRHQSESSDGTSVERSNHMDEVCSQNIKHM 414
Query: 584 VPAQDMKESQEVKEALRAQMEVQRRLHEQVE 676
++ ++ +++ L AQ+E+QR++ QVE
Sbjct: 415 EASEGLRTQIGLQKQLHAQLELQRKMQLQVE 507
Score = 59.7 bits (124), Expect(2) = 5e-022
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3 / +1
Query: 318 TADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
T K R+RWT +LHE+FVDAV +LGG EKATPK
Sbjct: 148 TTPTKSRMRWTPELHEKFVDAVDKLGGSEKATPK 249
>gb|BF621611.1|BF621611 HVSMEa0011J15f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011J15f, mRNA sequence
Length = 868
Score = 54.7 bits (113), Expect(3) = 2e-021
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +3 / +2
Query: 330 KPRLRWTADLHERFVDAVAQLGGPEKATPK 419
K R+RWT +LHE FVD+V +LGG EKATPK
Sbjct: 41 KQRMRWTPELHECFVDSVNKLGGSEKATPK 130
Score = 45.5 bits (93), Expect(3) = 2e-021
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +2 / +2
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGK 499
++ K +L+ M V GLT++H+KSHLQKYR +
Sbjct: 116 KATPKGVLKLMKVDGLTIYHVKSHLQKYRTAR 211
Score = 40.0 bits (81), Expect(3) = 2e-021
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +2 / +2
Query: 596 DMKESQEVKEALRAQMEVQRRLHEQVE 676
D+K S ++ EALR QMEV +RL EQ+E
Sbjct: 275 DLKSSMDLTEALRLQMEVHKRLDEQLE 355
>gb|BU997001.1|BU997001 HI06J07r HI Hordeum vulgare subsp. vulgare cDNA clone HI06J07
5-PRIME, mRNA sequence
Length = 542
Score = 66.1 bits (138), Expect(2) = 6e-021
Identities = 24/30 (80%), Positives = 28/30 (93%)
Frame = +3 / +3
Query: 330 KPRLRWTADLHERFVDAVAQLGGPEKATPK 419
K RLRWT+DLH RFVDA+AQLGGP++ATPK
Sbjct: 249 KQRLRWTSDLHSRFVDAIAQLGGPDRATPK 338
Score = 54.7 bits (113), Expect(2) = 6e-021
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +2 / +3
Query: 416 KNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKD 535
K +L MGV G+T++H+KSHLQKYRL K + +E SK+
Sbjct: 336 KGVLTVMGVPGITIYHVKSHLQKYRLAKYIPESPAEGSKE 455
>gb|BF617544.2|BF617544 HVSMEc0017O16f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0017O16f, mRNA sequence
Length = 779
Score = 68.9 bits (144), Expect(2) = 8e-021
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = +3 / +1
Query: 309 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
L+L+ D KPRL+WT +LH+RFV+A QLGGP+KATPK
Sbjct: 295 LILSTDAKPRLKWTPELHDRFVEASNQLGGPDKATPK 405
Score = 51.5 bits (106), Expect(2) = 8e-021
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGK 499
++ K I+R MGV GLTL+HLKS LQKYRL K
Sbjct: 391 KATPKTIMRLMGVPGLTLYHLKSPLQKYRLSK 486
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 387,599,477
Number of Sequences: 312970
Number of extensions: 6423116
Number of successful extensions: 77008
Number of sequences better than 1.0e-020: 24
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 10610142228
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)