TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 5351892.2.1
         (466 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AV934849.1|AV934849  AV934849 K. Sato unpublished cDNA li...   117   4e-026
gb|AV934996.1|AV934996  AV934996 K. Sato unpublished cDNA li...   117   4e-026

>gb|AV934849.1|AV934849 AV934849 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal1o03 3', mRNA sequence
          Length = 554

 Score =  117 bits (250), Expect = 4e-026
 Identities = 40/60 (66%), Positives = 51/60 (85%)
 Frame = +3 / -2

                                                                       
Query: 42  ENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVSWGLKIVDQTH 221
           E+   P+PPCVRAMS+EPCFH   +YDC ARKD D+GKV+PYVRHCEDVSWG+KI ++++
Sbjct: 199 EDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHCEDVSWGIKIANESN 20



>gb|AV934996.1|AV934996 AV934996 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal2h20 3', mRNA sequence
          Length = 593

 Score =  117 bits (250), Expect = 4e-026
 Identities = 40/60 (66%), Positives = 51/60 (85%)
 Frame = +3 / -2

                                                                       
Query: 42  ENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVSWGLKIVDQTH 221
           E+   P+PPCVRAMS+EPCFH   +YDC ARKD D+GKV+PYVRHCEDVSWG+KI ++++
Sbjct: 199 EDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHCEDVSWGIKIANESN 20



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 198,313,811
Number of Sequences: 312970
Number of extensions: 2598521
Number of successful extensions: 75591
Number of sequences better than 1.0e-020: 2
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 4443886616
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)