TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573985.2.1
(373 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE455799.3|BE455799 HVSMEg0015D01f Hordeum vulgare pre-a... 115 1e-053
dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-gluc... 115 2e-053
gb|BG418753.1|BG418753 HVSMEk0024E15f Hordeum vulgare testa... 115 2e-053
gb|CK123474.1|CK123474 BES1824104c11 BES1824 Hordeum vulgar... 115 2e-053
gb|AL508501.1|AL508501 AL508501 Hordeum vulgare Barke devel... 115 2e-053
gb|AV925024.1|AV925024 AV925024 K. Sato unpublished cDNA li... 113 1e-050
gb|AV914917.1|AV914917 AV914917 K. Sato unpublished cDNA li... 115 1e-048
gb|AV914894.1|AV914894 AV914894 K. Sato unpublished cDNA li... 115 1e-048
gb|AV925025.1|AV925025 AV925025 K. Sato unpublished cDNA li... 113 2e-042
gb|AV925017.1|AV925017 AV925017 K. Sato unpublished cDNA li... 113 2e-042
gb|BU983204.1|BU983204 HA28O05r HA Hordeum vulgare subsp. v... 110 1e-041
gb|CA027952.1|CA027952 HZ60I16r HZ Hordeum vulgare subsp. v... 155 1e-037
gb|CA030964.1|CA030964 HX08K06r HX Hordeum vulgare subsp. v... 155 1e-037
gb|BG365744.1|BG365744 HVSMEi0004A10f Hordeum vulgare 20 DA... 115 1e-028
gb|AW982666.3|AW982666 HVSMEg0003O04f Hordeum vulgare pre-a... 115 1e-025
gb|BI952568.1|BI952568 HVSMEm0007A04f Hordeum vulgare green... 74 7e-023
gb|BI776580.2|BI776580 EBpi07_SQ001_A20_R pistil, 12 DPA, n... 100 5e-021
>gb|BE455799.3|BE455799 HVSMEg0015D01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0015D01f, mRNA sequence
Length = 578
Score = 115 bits (246), Expect(2) = 1e-053
Identities = 45/60 (75%), Positives = 45/60 (75%)
Frame = -3 / +3
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PNDHYCWMRPEDIDYKRPV ECHSCSD SIVFKDSK YSDKLV GAKAL
Sbjct: 336 PNDHYCWMRPEDIDYKRPVIECHSCSDLAAEMAAALAAASIVFKDSKAYSDKLVHGAKAL 515
Score = 113 bits (242), Expect(2) = 1e-053
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = -3 / +3
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG 213
R +YEAIGELDH+KE+IKWGTDY+LKTFNSSADTIDRIVAQVGVGDTSKG
Sbjct: 180 RAKYEAIGELDHVKEIIKWGTDYMLKTFNSSADTIDRIVAQVGVGDTSKG 329
Score = 90.9 bits (192), Expect(2) = 2e-036
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +1 / -2
Query: 214 PLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSLIWSSSPMASYL 357
PLEVSPTPT ATI S+VSADELKVL M*SVPHL+ SL WSSSPMASYL
Sbjct: 328 PLEVSPTPTWATIRSMVSADELKVLSM*SVPHLMISLTWSSSPMASYL 185
Score = 79.4 bits (167), Expect(2) = 2e-036
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +2 / -3
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH 199
AC+S CCP*TLWK + G++P Q D S+S TR* A CS+CPLVSSSS+GH
Sbjct: 492 ACQSTPCCP*TLWKPRRGRRPSQRQDPSRSGTR*QASCSQCPLVSSSSSGH 340
Score = 72.1 bits (151), Expect(2) = 1e-027
Identities = 33/54 (61%), Positives = 37/54 (68%)
Frame = +3 / -1
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIR 203
D+LV V AVLEHYGS +G H I A V L D P VV+VLWSHPAV+VIR
Sbjct: 497 DKLVRVRLAVLEHYGSRGEGGGHLSGKIRAGVALDDRPLVVNVLWSHPAVVVIR 336
Score = 68.9 bits (144), Expect(2) = 1e-027
Identities = 32/57 (56%), Positives = 39/57 (68%)
Frame = +3 / -1
Query: 192 MVIRLTAAFRGVTYTHLSDNPVYRVSR*IEGFEDVVCSPLDQLLDMVELTDGLVPRP 362
+V+ AFRGVT+ +L D+PV V +EG E VV +PLD LLDMVEL DGLV P
Sbjct: 350 VVVIRHGAFRGVTHANLGDDPVDGVGGRVEGLEHVVGAPLDDLLDMVELADGLVLGP 180
Score = 65.7 bits (137), Expect(2) = 4e-023
Identities = 32/64 (50%), Positives = 33/64 (51%)
Frame = +1 / -2
Query: 13 PGQDRALAPXXXXXXXXXXXXNTMEXXXXXXXXXXXXXEQE*HSVTGLL*SMSSGLIQQ* 192
P ALAP NTME EQE HS+TGLL*SMSSGLIQQ*
Sbjct: 526 PNLYSALAPWTSLSEYALLSLNTMEAAARAAAISAARSEQEWHSMTGLL*SMSSGLIQQ* 347
Query: 193 WSLG 204
WS G
Sbjct: 346 WSFG 335
Score = 62.9 bits (131), Expect(2) = 2e-021
Identities = 33/60 (55%), Positives = 38/60 (63%)
Frame = -2 / +2
Query: 366 VAAEVRGHR*ARPYQGADQVGNRLHPQNLQFIC*HDRQDCRSGGCR*HL*RQQSA**PLL 187
V +VRGHR ARP QG QVG+RLH Q+LQ + H R D R G *HL*R + * LL
Sbjct: 176 VQGQVRGHRRARPCQGDHQVGHRLHAQDLQLVRRHHRPDRRPGWRG*HL*RPHAE*PLLL 355
Score = 60.2 bits (125), Expect(2) = 4e-023
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +2 / -3
Query: 182 SSSNGH*ADCCL*RCHLHPPERQSCLSCQQMN*RF*GCSLFPT*SAP*YGRAHRWPRTSA 361
SSS+ + L*RCH P R+S C++ +*R * CS PT* +P*+GRA RWPRT
Sbjct: 360 SSSSSGHSAWGL*RCHPRQPGRRSGRWCRRTS*RS*ACSRCPT**SP*HGRARRWPRTWP 181
Query: 362 AT 367
T
Sbjct: 180 CT 175
Score = 57.0 bits (118), Expect(2) = 2e-021
Identities = 32/59 (54%), Positives = 35/59 (59%)
Frame = -2 / +2
Query: 198 *PLLLDETRGHRLQKASHXXXXXXXXXX*NGCCPGCSFHSVQGQQNLLRQARQGRQGPV 22
*PLLLDETRGH LQ+A H *+G P FHSVQGQQ +L QA QG V
Sbjct: 341 *PLLLDETRGH*LQEACHRVPLLLGSCR*DGRRPRRGFHSVQGQQGVL*QACPRCQGAV 517
>dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-glucanase Cel1, complete cds
Length = 2442
Score = 115 bits (246), Expect(2) = 2e-053
Identities = 45/60 (75%), Positives = 45/60 (75%)
Frame = -3 / +1
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PNDHYCWMRPEDIDYKRPV ECHSCSD SIVFKDSK YSDKLV GAKAL
Sbjct: 907 PNDHYCWMRPEDIDYKRPVIECHSCSDLAAEMAAALAAASIVFKDSKAYSDKLVHGAKAL 1086
Score = 113 bits (242), Expect(2) = 2e-053
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = -3 / +1
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG 213
R +YEAIGELDH+KE+IKWGTDY+LKTFNSSADTIDRIVAQVGVGDTSKG
Sbjct: 751 RAKYEAIGELDHVKEIIKWGTDYMLKTFNSSADTIDRIVAQVGVGDTSKG 900
Score = 90.9 bits (192), Expect(2) = 3e-036
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +1 / -2
Query: 214 PLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSLIWSSSPMASYL 357
PLEVSPTPT ATI S+VSADELKVL M*SVPHL+ SL WSSSPMASYL
Sbjct: 899 PLEVSPTPTWATIRSMVSADELKVLSM*SVPHLMISLTWSSSPMASYL 756
Score = 79.4 bits (167), Expect(2) = 3e-036
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +2 / -3
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH 199
AC+S CCP*TLWK + G++P Q D S+S TR* A CS+CPLVSSSS+GH
Sbjct: 1063 ACQSTPCCP*TLWKPRRGRRPSQRQDPSRSGTR*QASCSQCPLVSSSSSGH 911
Score = 72.1 bits (151), Expect(2) = 3e-027
Identities = 33/54 (61%), Positives = 37/54 (68%)
Frame = +3 / -1
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIR 203
D+LV V AVLEHYGS +G H I A V L D P VV+VLWSHPAV+VIR
Sbjct: 1068 DKLVRVRLAVLEHYGSRGEGGGHLSGKIRAGVALDDRPLVVNVLWSHPAVVVIR 907
Score = 68.0 bits (142), Expect(2) = 3e-027
Identities = 32/57 (56%), Positives = 38/57 (66%)
Frame = +3 / -1
Query: 192 MVIRLTAAFRGVTYTHLSDNPVYRVSR*IEGFEDVVCSPLDQLLDMVELTDGLVPRP 362
+V+ AFRGVT+ L D+PV V +EG E VV +PLD LLDMVEL DGLV P
Sbjct: 921 VVVIRHGAFRGVTHADLGDDPVDGVGGRVEGLEHVVGAPLDDLLDMVELADGLVLGP 751
Score = 65.7 bits (137), Expect(2) = 8e-023
Identities = 32/64 (50%), Positives = 33/64 (51%)
Frame = +1 / -2
Query: 13 PGQDRALAPXXXXXXXXXXXXNTMEXXXXXXXXXXXXXEQE*HSVTGLL*SMSSGLIQQ* 192
P ALAP NTME EQE HS+TGLL*SMSSGLIQQ*
Sbjct: 1097 PNLYSALAPWTSLSEYALLSLNTMEAAARAAAISAARSEQEWHSMTGLL*SMSSGLIQQ* 918
Query: 193 WSLG 204
WS G
Sbjct: 917 WSFG 906
Score = 62.9 bits (131), Expect(2) = 3e-021
Identities = 33/60 (55%), Positives = 38/60 (63%)
Frame = -2 / +3
Query: 366 VAAEVRGHR*ARPYQGADQVGNRLHPQNLQFIC*HDRQDCRSGGCR*HL*RQQSA**PLL 187
V +VRGHR ARP QG QVG+RLH Q+LQ + H R D R G *HL*R + * LL
Sbjct: 747 VQGQVRGHRRARPCQGDHQVGHRLHAQDLQLVRRHHRPDRRPGRRG*HL*RPHAE*PLLL 926
Score = 59.7 bits (124), Expect(2) = 8e-023
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +2 / -3
Query: 182 SSSNGH*ADCCL*RCHLHPPERQSCLSCQQMN*RF*GCSLFPT*SAP*YGRAHRWPRTSA 361
SSS+ + L*RCH P R+S C++ +*R * CS PT* +P*+GRA RWPRT
Sbjct: 931 SSSSSGHSAWGL*RCHPRRPGRRSGRWCRRTS*RS*ACSRCPT**SP*HGRARRWPRTWP 752
Query: 362 AT 367
T
Sbjct: 751 CT 746
Score = 57.0 bits (118), Expect(2) = 3e-021
Identities = 32/59 (54%), Positives = 35/59 (59%)
Frame = -2 / +3
Query: 198 *PLLLDETRGHRLQKASHXXXXXXXXXX*NGCCPGCSFHSVQGQQNLLRQARQGRQGPV 22
*PLLLDETRGH LQ+A H *+G P FHSVQGQQ +L QA QG V
Sbjct: 912 *PLLLDETRGH*LQEACHRVPLLLGSCR*DGRRPRRGFHSVQGQQGVL*QACPRCQGAV 1088
>gb|BG418753.1|BG418753 HVSMEk0024E15f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024E15f, mRNA sequence
Length = 879
Score = 115 bits (246), Expect(2) = 2e-053
Identities = 45/60 (75%), Positives = 45/60 (75%)
Frame = -3 / +3
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PNDHYCWMRPEDIDYKRPV ECHSCSD SIVFKDSK YSDKLV GAKAL
Sbjct: 228 PNDHYCWMRPEDIDYKRPVIECHSCSDLAAEMAAALAAASIVFKDSKAYSDKLVHGAKAL 407
Score = 113 bits (242), Expect(2) = 2e-053
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = -3 / +3
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG 213
R +YEAIGELDH+KE+IKWGTDY+LKTFNSSADTIDRIVAQVGVGDTSKG
Sbjct: 72 RAKYEAIGELDHVKEIIKWGTDYMLKTFNSSADTIDRIVAQVGVGDTSKG 221
Score = 90.9 bits (192), Expect(2) = 3e-036
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +1 / -3
Query: 214 PLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSLIWSSSPMASYL 357
PLEVSPTPT ATI S+VSADELKVL M*SVPHL+ SL WSSSPMASYL
Sbjct: 220 PLEVSPTPTWATIRSMVSADELKVLSM*SVPHLMISLTWSSSPMASYL 77
Score = 79.4 bits (167), Expect(2) = 3e-036
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +2 / -1
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH 199
AC+S CCP*TLWK + G++P Q D S+S TR* A CS+CPLVSSSS+GH
Sbjct: 384 ACQSTPCCP*TLWKPRRGRRPSQRQDPSRSGTR*QASCSQCPLVSSSSSGH 232
Score = 72.1 bits (151), Expect(2) = 2e-027
Identities = 33/54 (61%), Positives = 37/54 (68%)
Frame = +3 / -2
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIR 203
D+LV V AVLEHYGS +G H I A V L D P VV+VLWSHPAV+VIR
Sbjct: 389 DKLVRVRLAVLEHYGSRGEGGGHLSGKIRAGVALDDRPLVVNVLWSHPAVVVIR 228
Score = 68.9 bits (144), Expect(2) = 2e-027
Identities = 32/57 (56%), Positives = 39/57 (68%)
Frame = +3 / -2
Query: 192 MVIRLTAAFRGVTYTHLSDNPVYRVSR*IEGFEDVVCSPLDQLLDMVELTDGLVPRP 362
+V+ AFRGVT+ +L D+PV V +EG E VV +PLD LLDMVEL DGLV P
Sbjct: 242 VVVIRHGAFRGVTHANLGDDPVDGVGGRVEGLEHVVGAPLDDLLDMVELADGLVLGP 72
Score = 65.7 bits (137), Expect(2) = 6e-023
Identities = 32/64 (50%), Positives = 33/64 (51%)
Frame = +1 / -3
Query: 13 PGQDRALAPXXXXXXXXXXXXNTMEXXXXXXXXXXXXXEQE*HSVTGLL*SMSSGLIQQ* 192
P ALAP NTME EQE HS+TGLL*SMSSGLIQQ*
Sbjct: 418 PNLYSALAPWTSLSEYALLSLNTMEAAARAAAISAARSEQEWHSMTGLL*SMSSGLIQQ* 239
Query: 193 WSLG 204
WS G
Sbjct: 238 WSFG 227
Score = 62.9 bits (131), Expect(2) = 3e-021
Identities = 33/60 (55%), Positives = 38/60 (63%)
Frame = -2 / +2
Query: 366 VAAEVRGHR*ARPYQGADQVGNRLHPQNLQFIC*HDRQDCRSGGCR*HL*RQQSA**PLL 187
V +VRGHR ARP QG QVG+RLH Q+LQ + H R D R G *HL*R + * LL
Sbjct: 68 VQGQVRGHRRARPCQGDHQVGHRLHAQDLQLVRRHHRPDRRPGWRG*HL*RPHAE*PLLL 247
Score = 60.2 bits (125), Expect(2) = 6e-023
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +2 / -1
Query: 182 SSSNGH*ADCCL*RCHLHPPERQSCLSCQQMN*RF*GCSLFPT*SAP*YGRAHRWPRTSA 361
SSS+ + L*RCH P R+S C++ +*R * CS PT* +P*+GRA RWPRT
Sbjct: 252 SSSSSGHSAWGL*RCHPRQPGRRSGRWCRRTS*RS*ACSRCPT**SP*HGRARRWPRTWP 73
Query: 362 AT 367
T
Sbjct: 72 CT 67
Score = 57.0 bits (118), Expect(2) = 3e-021
Identities = 32/59 (54%), Positives = 35/59 (59%)
Frame = -2 / +2
Query: 198 *PLLLDETRGHRLQKASHXXXXXXXXXX*NGCCPGCSFHSVQGQQNLLRQARQGRQGPV 22
*PLLLDETRGH LQ+A H *+G P FHSVQGQQ +L QA QG V
Sbjct: 233 *PLLLDETRGH*LQEACHRVPLLLGSCR*DGRRPRRGFHSVQGQQGVL*QACPRCQGAV 409
>gb|CK123474.1|CK123474 BES1824104c11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010C114 5-PRIME, mRNA sequence
Length = 780
Score = 115 bits (246), Expect(2) = 2e-053
Identities = 45/60 (75%), Positives = 45/60 (75%)
Frame = -3 / +2
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PNDHYCWMRPEDIDYKRPV ECHSCSD SIVFKDSK YSDKLV GAKAL
Sbjct: 455 PNDHYCWMRPEDIDYKRPVIECHSCSDLAAEMAAALAAASIVFKDSKAYSDKLVHGAKAL 634
Score = 113 bits (242), Expect(2) = 2e-053
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = -3 / +2
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG 213
R +YEAIGELDH+KE+IKWGTDY+LKTFNSSADTIDRIVAQVGVGDTSKG
Sbjct: 299 RAKYEAIGELDHVKEIIKWGTDYMLKTFNSSADTIDRIVAQVGVGDTSKG 448
Score = 90.9 bits (192), Expect(2) = 3e-036
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +1 / -1
Query: 214 PLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSLIWSSSPMASYL 357
PLEVSPTPT ATI S+VSADELKVL M*SVPHL+ SL WSSSPMASYL
Sbjct: 447 PLEVSPTPTWATIRSMVSADELKVLSM*SVPHLMISLTWSSSPMASYL 304
Score = 79.4 bits (167), Expect(2) = 3e-036
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +2 / -2
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH 199
AC+S CCP*TLWK + G++P Q D S+S TR* A CS+CPLVSSSS+GH
Sbjct: 611 ACQSTPCCP*TLWKPRRGRRPSQRQDPSRSGTR*QASCSQCPLVSSSSSGH 459
Score = 72.1 bits (151), Expect(2) = 1e-026
Identities = 33/54 (61%), Positives = 37/54 (68%)
Frame = +3 / -3
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIR 203
D+LV V AVLEHYGS +G H I A V L D P VV+VLWSHPAV+VIR
Sbjct: 616 DKLVRVRLAVLEHYGSRGEGGGHLSGKIRAGVALDDRPLVVNVLWSHPAVVVIR 455
Score = 66.1 bits (138), Expect(2) = 1e-026
Identities = 31/57 (54%), Positives = 38/57 (66%)
Frame = +3 / -3
Query: 192 MVIRLTAAFRGVTYTHLSDNPVYRVSR*IEGFEDVVCSPLDQLLDMVELTDGLVPRP 362
+V+ AFRGVT+ L D+PV V ++G E VV +PLD LLDMVEL DGLV P
Sbjct: 469 VVVIRHGAFRGVTHADLGDDPVDGVGGRVKGLEHVVGAPLDDLLDMVELADGLVLGP 299
Score = 65.7 bits (137), Expect(2) = 8e-023
Identities = 32/64 (50%), Positives = 33/64 (51%)
Frame = +1 / -1
Query: 13 PGQDRALAPXXXXXXXXXXXXNTMEXXXXXXXXXXXXXEQE*HSVTGLL*SMSSGLIQQ* 192
P ALAP NTME EQE HS+TGLL*SMSSGLIQQ*
Sbjct: 645 PNLYSALAPWTSLSEYALLSLNTMEAAARAAAISAARSEQEWHSMTGLL*SMSSGLIQQ* 466
Query: 193 WSLG 204
WS G
Sbjct: 465 WSFG 454
Score = 59.7 bits (124), Expect(2) = 8e-023
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +2 / -2
Query: 182 SSSNGH*ADCCL*RCHLHPPERQSCLSCQQMN*RF*GCSLFPT*SAP*YGRAHRWPRTSA 361
SSS+ + L*RCH P R+S C++ +*R * CS PT* +P*+GRA RWPRT
Sbjct: 479 SSSSSGHSAWGL*RCHPRRPGRRSGRWCRRTS*RS*ACSRCPT**SP*HGRARRWPRTWP 300
Query: 362 AT 367
T
Sbjct: 299 CT 294
>gb|AL508501.1|AL508501 AL508501 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08P04V 5',
mRNA sequence
Length = 692
Score = 115 bits (246), Expect(2) = 2e-053
Identities = 45/60 (75%), Positives = 45/60 (75%)
Frame = -3 / +1
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PNDHYCWMRPEDIDYKRPV ECHSCSD SIVFKDSK YSDKLV GAKAL
Sbjct: 355 PNDHYCWMRPEDIDYKRPVIECHSCSDLAAEMAAALAAASIVFKDSKAYSDKLVHGAKAL 534
Score = 113 bits (242), Expect(2) = 2e-053
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = -3 / +1
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG 213
R +YEAIGELDH+KE+IKWGTDY+LKTFNSSADTIDRIVAQVGVGDTSKG
Sbjct: 199 RAKYEAIGELDHVKEIIKWGTDYMLKTFNSSADTIDRIVAQVGVGDTSKG 348
Score = 90.9 bits (192), Expect(2) = 3e-036
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +1 / -1
Query: 214 PLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSLIWSSSPMASYL 357
PLEVSPTPT ATI S+VSADELKVL M*SVPHL+ SL WSSSPMASYL
Sbjct: 347 PLEVSPTPTWATIRSMVSADELKVLSM*SVPHLMISLTWSSSPMASYL 204
Score = 79.4 bits (167), Expect(2) = 3e-036
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +2 / -2
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH 199
AC+S CCP*TLWK + G++P Q D S+S TR* A CS+CPLVSSSS+GH
Sbjct: 511 ACQSTPCCP*TLWKPRRGRRPSQRQDPSRSGTR*QASCSQCPLVSSSSSGH 359
Score = 72.1 bits (151), Expect(2) = 1e-026
Identities = 33/54 (61%), Positives = 37/54 (68%)
Frame = +3 / -3
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIR 203
D+LV V AVLEHYGS +G H I A V L D P VV+VLWSHPAV+VIR
Sbjct: 516 DKLVRVRLAVLEHYGSRGEGGGHLSGKIRAGVALDDRPLVVNVLWSHPAVVVIR 355
Score = 66.1 bits (138), Expect(2) = 1e-026
Identities = 31/57 (54%), Positives = 38/57 (66%)
Frame = +3 / -3
Query: 192 MVIRLTAAFRGVTYTHLSDNPVYRVSR*IEGFEDVVCSPLDQLLDMVELTDGLVPRP 362
+V+ AFRGVT+ L D+PV V ++G E VV +PLD LLDMVEL DGLV P
Sbjct: 369 VVVIRHGAFRGVTHADLGDDPVDGVGGRVKGLEHVVGAPLDDLLDMVELADGLVLGP 199
Score = 65.7 bits (137), Expect(2) = 8e-023
Identities = 32/64 (50%), Positives = 33/64 (51%)
Frame = +1 / -1
Query: 13 PGQDRALAPXXXXXXXXXXXXNTMEXXXXXXXXXXXXXEQE*HSVTGLL*SMSSGLIQQ* 192
P ALAP NTME EQE HS+TGLL*SMSSGLIQQ*
Sbjct: 545 PNLYSALAPWTSLSEYALLSLNTMEAAARAAAISAARSEQEWHSMTGLL*SMSSGLIQQ* 366
Query: 193 WSLG 204
WS G
Sbjct: 365 WSFG 354
Score = 59.7 bits (124), Expect(2) = 8e-023
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +2 / -2
Query: 182 SSSNGH*ADCCL*RCHLHPPERQSCLSCQQMN*RF*GCSLFPT*SAP*YGRAHRWPRTSA 361
SSS+ + L*RCH P R+S C++ +*R * CS PT* +P*+GRA RWPRT
Sbjct: 379 SSSSSGHSAWGL*RCHPRRPGRRSGRWCRRTS*RS*ACSRCPT**SP*HGRARRWPRTWP 200
Query: 362 AT 367
T
Sbjct: 199 CT 194
>gb|AV925024.1|AV925024 AV925024 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17p11 5', mRNA sequence
Length = 639
Score = 113 bits (242), Expect(2) = 1e-050
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = -3 / +2
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG 213
R +YEAIGELDH+KE+IKWGTDY+LKTFNSSADTIDRIVAQVGVGDTSKG
Sbjct: 320 RAKYEAIGELDHVKEIIKWGTDYMLKTFNSSADTIDRIVAQVGVGDTSKG 469
Score = 105 bits (224), Expect(2) = 1e-050
Identities = 40/54 (74%), Positives = 40/54 (74%)
Frame = -3 / +2
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLV 42
PNDHYCWMRPEDIDYKRPV ECHSCSD SIVFKDSK YSDKLV
Sbjct: 476 PNDHYCWMRPEDIDYKRPVIECHSCSDLAAEMAAALAAASIVFKDSKAYSDKLV 637
Score = 90.9 bits (192), Expect(2) = 3e-036
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +1 / -1
Query: 214 PLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSLIWSSSPMASYL 357
PLEVSPTPT ATI S+VSADELKVL M*SVPHL+ SL WSSSPMASYL
Sbjct: 468 PLEVSPTPTWATIRSMVSADELKVLSM*SVPHLMISLTWSSSPMASYL 325
Score = 79.4 bits (167), Expect(2) = 3e-036
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +2 / -2
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH 199
AC+S CCP*TLWK + G++P Q D S+S TR* A CS+CPLVSSSS+GH
Sbjct: 632 ACQSTPCCP*TLWKPRRGRRPSQRQDPSRSGTR*QASCSQCPLVSSSSSGH 480
Score = 72.1 bits (151), Expect(2) = 9e-027
Identities = 33/54 (61%), Positives = 37/54 (68%)
Frame = +3 / -3
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIR 203
D+LV V AVLEHYGS +G H I A V L D P VV+VLWSHPAV+VIR
Sbjct: 637 DKLVRVRLAVLEHYGSRGEGGGHLSGKIRAGVALDDRPLVVNVLWSHPAVVVIR 476
Score = 66.1 bits (138), Expect(2) = 9e-027
Identities = 31/57 (54%), Positives = 38/57 (66%)
Frame = +3 / -3
Query: 192 MVIRLTAAFRGVTYTHLSDNPVYRVSR*IEGFEDVVCSPLDQLLDMVELTDGLVPRP 362
+V+ AFRGVT+ L D+PV V ++G E VV +PLD LLDMVEL DGLV P
Sbjct: 490 VVVIRHGAFRGVTHADLGDDPVDGVGGRVKGLEHVVGAPLDDLLDMVELADGLVLGP 320
Score = 60.2 bits (125), Expect(2) = 2e-021
Identities = 27/43 (62%), Positives = 28/43 (65%)
Frame = +1 / -1
Query: 76 NTMEXXXXXXXXXXXXXEQE*HSVTGLL*SMSSGLIQQ*WSLG 204
NTME EQE HS+TGLL*SMSSGLIQQ*WS G
Sbjct: 603 NTMEAAARAAAISAARSEQEWHSMTGLL*SMSSGLIQQ*WSFG 475
Score = 59.7 bits (124), Expect(2) = 2e-021
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +2 / -2
Query: 182 SSSNGH*ADCCL*RCHLHPPERQSCLSCQQMN*RF*GCSLFPT*SAP*YGRAHRWPRTSA 361
SSS+ + L*RCH P R+S C++ +*R * CS PT* +P*+GRA RWPRT
Sbjct: 500 SSSSSGHSAWGL*RCHPRRPGRRSGRWCRRTS*RS*ACSRCPT**SP*HGRARRWPRTWP 321
Query: 362 AT 367
T
Sbjct: 320 CT 315
>gb|AV914917.1|AV914917 AV914917 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9a10 5', mRNA sequence
Length = 618
Score = 115 bits (246), Expect(3) = 1e-048
Identities = 45/60 (75%), Positives = 45/60 (75%)
Frame = -3 / +3
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PNDHYCWMRPEDIDYKRPV ECHSCSD SIVFKDSK YSDKLV GAKAL
Sbjct: 201 PNDHYCWMRPEDIDYKRPVIECHSCSDLAAEMAAALAAASIVFKDSKAYSDKLVHGAKAL 380
Score = 83.1 bits (175), Expect(3) = 1e-048
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = -3 / +3
Query: 323 KELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG 213
+ +IKWGTDY+LKTFNSSADTIDRIVAQVGVGDTSKG
Sbjct: 84 RXIIKWGTDYMLKTFNSSADTIDRIVAQVGVGDTSKG 194
Score = 79.4 bits (167), Expect(3) = 1e-032
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +2 / -1
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH 199
AC+S CCP*TLWK + G++P Q D S+S TR* A CS+CPLVSSSS+GH
Sbjct: 357 ACQSTPCCP*TLWKPRRGRRPSQRQDPSRSGTR*QASCSQCPLVSSSSSGH 205
Score = 72.1 bits (151), Expect(3) = 5e-024
Identities = 33/54 (61%), Positives = 37/54 (68%)
Frame = +3 / -2
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIR 203
D+LV V AVLEHYGS +G H I A V L D P VV+VLWSHPAV+VIR
Sbjct: 362 DKLVRVRLAVLEHYGSRGEGGGHLSGKIRAGVALDDRPLVVNVLWSHPAVVVIR 201
Score = 64.8 bits (135), Expect(3) = 1e-032
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = +1 / -3
Query: 214 PLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSL 324
PLEVSPTPT ATI S+VSADELKVL M*SVPHL+ L
Sbjct: 193 PLEVSPTPTWATIRSMVSADELKVLSM*SVPHLMIXL 83
Score = 43.2 bits (88), Expect(3) = 5e-024
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +3 / -2
Query: 192 MVIRLTAAFRGVTYTHLSDNPVYRVSR*IEGFEDVVCSPLDQL 320
+V+ AFRGVT+ L D+PV V ++G E VV +PLD L
Sbjct: 215 VVVIRHGAFRGVTHADLGDDPVDGVGGRVKGLEHVVGAPLDDL 87
Score = 31.8 bits (63), Expect(3) = 1e-048
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3 / +2
Query: 362 RPRYEAIGELDHIK 321
R +YEAIGELDH+K
Sbjct: 44 RAKYEAIGELDHVK 85
Score = 30.9 bits (61), Expect(3) = 1e-032
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1 / -1
Query: 316 SSLIWSSSPMASYL 357
S L WSSSPMASYL
Sbjct: 90 SXLTWSSSPMASYL 49
Score = 30.4 bits (60), Expect(3) = 5e-024
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2 / -2
Query: 305 PT*SAP*YGRAHRWPRTSAAT 367
P P*+GRA RWPRT T
Sbjct: 101 PLDDLP*HGRARRWPRTWPCT 39
>gb|AV914894.1|AV914894 AV914894 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8o19 5', mRNA sequence
Length = 562
Score = 115 bits (246), Expect(3) = 1e-048
Identities = 45/60 (75%), Positives = 45/60 (75%)
Frame = -3 / +3
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PNDHYCWMRPEDIDYKRPV ECHSCSD SIVFKDSK YSDKLV GAKAL
Sbjct: 327 PNDHYCWMRPEDIDYKRPVIECHSCSDLAAEMAAALAAASIVFKDSKAYSDKLVHGAKAL 506
Score = 82.6 bits (174), Expect(3) = 1e-048
Identities = 33/35 (94%), Positives = 35/35 (100%)
Frame = -3 / +3
Query: 317 LIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG 213
+IKWGTDY+LKTFNSSADTIDRIVAQVGVGDTSKG
Sbjct: 216 IIKWGTDYMLKTFNSSADTIDRIVAQVGVGDTSKG 320
Score = 79.4 bits (167), Expect(3) = 2e-032
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +2 / -2
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH 199
AC+S CCP*TLWK + G++P Q D S+S TR* A CS+CPLVSSSS+GH
Sbjct: 483 ACQSTPCCP*TLWKPRRGRRPSQRQDPSRSGTR*QASCSQCPLVSSSSSGH 331
Score = 72.1 bits (151), Expect(3) = 4e-024
Identities = 33/54 (61%), Positives = 37/54 (68%)
Frame = +3 / -3
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIR 203
D+LV V AVLEHYGS +G H I A V L D P VV+VLWSHPAV+VIR
Sbjct: 488 DKLVRVRLAVLEHYGSRGEGGGHLSGKIRAGVALDDRPLVVNVLWSHPAVVVIR 327
Score = 63.8 bits (133), Expect(3) = 2e-032
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = +1 / -1
Query: 214 PLEVSPTPT*ATILSIVSADELKVLRM*SVPHLI 315
PLEVSPTPT ATI S+VSADELKVL M*SVPHL+
Sbjct: 319 PLEVSPTPTWATIRSMVSADELKVLSM*SVPHLM 218
Score = 43.2 bits (88), Expect(3) = 4e-024
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +3 / -3
Query: 192 MVIRLTAAFRGVTYTHLSDNPVYRVSR*IEGFEDVVCSPLDQL 320
+V+ AFRGVT+ L D+PV V ++G E VV +PLD L
Sbjct: 341 VVVIRHGAFRGVTHADLGDDPVDGVGGRVKGLEHVVGAPLDDL 213
Score = 31.8 bits (63), Expect(3) = 1e-048
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3 / +2
Query: 362 RPRYEAIGELDHIK 321
R +YEAIGELDH+K
Sbjct: 170 RAKYEAIGELDHVK 211
Score = 30.9 bits (61), Expect(3) = 2e-032
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1 / -2
Query: 316 SSLIWSSSPMASYL 357
S L WSSSPMASYL
Sbjct: 216 SXLTWSSSPMASYL 175
Score = 30.4 bits (60), Expect(3) = 4e-024
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2 / -3
Query: 305 PT*SAP*YGRAHRWPRTSAAT 367
P P*+GRA RWPRT T
Sbjct: 227 PLDDLP*HGRARRWPRTWPCT 165
>gb|AV925025.1|AV925025 AV925025 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17p12 5', mRNA sequence
Length = 566
Score = 113 bits (242), Expect(2) = 2e-042
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = -3 / +2
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG 213
R +YEAIGELDH+KE+IKWGTDY+LKTFNSSADTIDRIVAQVGVGDTSKG
Sbjct: 317 RAKYEAIGELDHVKEIIKWGTDYMLKTFNSSADTIDRIVAQVGVGDTSKG 466
Score = 90.9 bits (192), Expect(2) = 3e-028
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +1 / -3
Query: 214 PLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSLIWSSSPMASYL 357
PLEVSPTPT ATI S+VSADELKVL M*SVPHL+ SL WSSSPMASYL
Sbjct: 465 PLEVSPTPTWATIRSMVSADELKVLSM*SVPHLMISLTWSSSPMASYL 322
Score = 78.0 bits (164), Expect(2) = 2e-042
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = -3 / +2
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSD 123
PNDHYCWMRPEDIDYKRPV ECHSCSD
Sbjct: 473 PNDHYCWMRPEDIDYKRPVIECHSCSD 553
Score = 51.9 bits (107), Expect(2) = 3e-028
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +1 / -3
Query: 127 EQE*HSVTGLL*SMSSGLIQQ*WSLG 204
EQE HS+TGLL*SMSSGLIQQ*WS G
Sbjct: 549 EQEWHSMTGLL*SMSSGLIQQ*WSFG 472
>gb|AV925017.1|AV925017 AV925017 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17o24 5', mRNA sequence
Length = 569
Score = 113 bits (242), Expect(2) = 2e-042
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = -3 / +3
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG 213
R +YEAIGELDH+KE+IKWGTDY+LKTFNSSADTIDRIVAQVGVGDTSKG
Sbjct: 321 RAKYEAIGELDHVKEIIKWGTDYMLKTFNSSADTIDRIVAQVGVGDTSKG 470
Score = 90.9 bits (192), Expect(2) = 3e-028
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +1 / -2
Query: 214 PLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSLIWSSSPMASYL 357
PLEVSPTPT ATI S+VSADELKVL M*SVPHL+ SL WSSSPMASYL
Sbjct: 469 PLEVSPTPTWATIRSMVSADELKVLSM*SVPHLMISLTWSSSPMASYL 326
Score = 78.0 bits (164), Expect(2) = 2e-042
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = -3 / +3
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSD 123
PNDHYCWMRPEDIDYKRPV ECHSCSD
Sbjct: 477 PNDHYCWMRPEDIDYKRPVIECHSCSD 557
Score = 51.9 bits (107), Expect(2) = 3e-028
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +1 / -2
Query: 127 EQE*HSVTGLL*SMSSGLIQQ*WSLG 204
EQE HS+TGLL*SMSSGLIQQ*WS G
Sbjct: 553 EQEWHSMTGLL*SMSSGLIQQ*WSFG 476
>gb|BU983204.1|BU983204 HA28O05r HA Hordeum vulgare subsp. vulgare cDNA clone HA28O05
5-PRIME, mRNA sequence
Length = 456
Score = 110 bits (234), Expect(2) = 1e-041
Identities = 43/50 (86%), Positives = 49/50 (98%)
Frame = -3 / +2
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG 213
R +++AIGELDH+KE+IKWGTDY+LKTFNSSADTIDRIVAQVGVGDTSKG
Sbjct: 218 RAKHQAIGELDHVKEIIKWGTDYMLKTFNSSADTIDRIVAQVGVGDTSKG 367
Score = 84.0 bits (177), Expect(2) = 3e-026
Identities = 38/45 (84%), Positives = 40/45 (88%)
Frame = +1 / -1
Query: 214 PLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSLIWSSSPMA 348
PLEVSPTPT ATI S+VSADELKVL M*SVPHL+ SL WSSSPMA
Sbjct: 366 PLEVSPTPTWATIRSMVSADELKVLSM*SVPHLMISLTWSSSPMA 232
Score = 78.0 bits (164), Expect(2) = 1e-041
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = -3 / +2
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSD 123
PNDHYCWMRPEDIDYKRPV ECHSCSD
Sbjct: 374 PNDHYCWMRPEDIDYKRPVIECHSCSD 454
Score = 51.9 bits (107), Expect(2) = 3e-026
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +1 / -1
Query: 127 EQE*HSVTGLL*SMSSGLIQQ*WSLG 204
EQE HS+TGLL*SMSSGLIQQ*WS G
Sbjct: 450 EQEWHSMTGLL*SMSSGLIQQ*WSFG 373
>gb|CA027952.1|CA027952 HZ60I16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60I16
5-PRIME, mRNA sequence
Length = 448
Score = 155 bits (334), Expect = 1e-037
Identities = 57/78 (73%), Positives = 66/78 (84%)
Frame = -3 / +3
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YEA GEL H+++ IKWG DY+LKTFNS+A +IDR+VAQVG S GSSQPNDHYCWMR
Sbjct: 192 KYEAAGELGHVRDTIKWGADYLLKTFNSTAHSIDRLVAQVGSAAISPGSSQPNDHYCWMR 371
Query: 176 PEDIDYKRPVTECHSCSD 123
PEDIDY RPVTECH+C D
Sbjct: 372 PEDIDYPRPVTECHTCPD 425
>gb|CA030964.1|CA030964 HX08K06r HX Hordeum vulgare subsp. vulgare cDNA clone HX08K06
5-PRIME, mRNA sequence
Length = 654
Score = 155 bits (334), Expect = 1e-037
Identities = 57/78 (73%), Positives = 66/78 (84%)
Frame = -3 / +2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YEA GEL H+++ IKWG DY+LKTFNS+A +IDR+VAQVG S GSSQPNDHYCWMR
Sbjct: 401 KYEAAGELGHVRDTIKWGADYLLKTFNSTAHSIDRLVAQVGSAAISPGSSQPNDHYCWMR 580
Query: 176 PEDIDYKRPVTECHSCSD 123
PEDIDY RPVTECH+C D
Sbjct: 581 PEDIDYPRPVTECHTCPD 634
>gb|BG365744.1|BG365744 HVSMEi0004A10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004A10f, mRNA sequence
Length = 484
Score = 115 bits (246), Expect(3) = 1e-028
Identities = 45/60 (75%), Positives = 45/60 (75%)
Frame = -3 / +3
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PNDHYCWMRPEDIDYKRPV ECHSCSD SIVFKDSK YSDKLV GAKAL
Sbjct: 45 PNDHYCWMRPEDIDYKRPVIECHSCSDLAAEMAAALAAASIVFKDSKAYSDKLVHGAKAL 224
Score = 28.1 bits (55), Expect(3) = 1e-028
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3 / +3
Query: 248 VAQVGVGDTSKG 213
VAQ GVGDTSKG
Sbjct: 3 VAQAGVGDTSKG 38
Score = 17.6 bits (32), Expect(3) = 1e-028
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1 / +1
Query: 229 VTPLKAAVSLMT 194
VTPLKA + T
Sbjct: 22 VTPLKAPCRMTT 57
>gb|AW982666.3|AW982666 HVSMEg0003O04f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003O04f, mRNA sequence
Length = 898
Score = 115 bits (246), Expect = 1e-025
Identities = 45/60 (75%), Positives = 45/60 (75%)
Frame = -3 / +1
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PNDHYCWMRPEDIDYKRPV ECHSCSD SIVFKDSK YSDKLV GAKAL
Sbjct: 19 PNDHYCWMRPEDIDYKRPVIECHSCSDLAAEMAAALAAASIVFKDSKAYSDKLVHGAKAL 198
>gb|BI952568.1|BI952568 HVSMEm0007A04f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007A04f, mRNA sequence
Length = 418
Score = 73.9 bits (155), Expect(2) = 7e-023
Identities = 27/41 (65%), Positives = 35/41 (85%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVG 234
RY+AIGE DH++ELIKWGTDY+L TFNSS TI+++ + VG
Sbjct: 139 RYKAIGEYDHVRELIKWGTDYLLLTFNSSGSTINKLYSXVG 261
Score = 51.0 bits (105), Expect(2) = 7e-023
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = -3 / +1
Query: 233 VGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHSCSD 123
VG S P+DHYCW RPED+ Y RPV + + D
Sbjct: 256 VGTAKINGSTPDDHYCWNRPEDMAYPRPVHQASAAPD 366
>gb|BI776580.2|BI776580 EBpi07_SQ001_A20_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ001_A20 5', mRNA sequence
Length = 292
Score = 100 bits (213), Expect = 5e-021
Identities = 37/58 (63%), Positives = 41/58 (70%)
Frame = -3 / +3
Query: 206 QPNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGA 33
QPNDHYCWMRPEDIDY RPVTECH+C D SIVFKD++ YS KL+ GA
Sbjct: 3 QPNDHYCWMRPEDIDYPRPVTECHTCPDLGAEMAAALAAASIVFKDNRAYSHKLLHGA 176
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 168,811,610
Number of Sequences: 312970
Number of extensions: 2275080
Number of successful extensions: 124522
Number of sequences better than 1.0e-020: 28
length of database: 58,378,179
effective HSP length: 49
effective length of database: 43,042,649
effective search space used: 3185156026
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)