TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871923.2.1
(1030 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE216598.1|BE216598 HV_CEb0010O18f Hordeum vulgare seedl... 502 e-141
gb|BQ468452.1|BQ468452 HM01E18T HM Hordeum vulgare subsp. v... 437 e-122
gb|BJ459695.1|BJ459695 BJ459695 K. Sato unpublished cDNA li... 313 1e-094
gb|BJ456765.1|BJ456765 BJ456765 K. Sato unpublished cDNA li... 298 3e-090
gb|CA015715.1|CA015715 HV12G12u HV Hordeum vulgare subsp. v... 265 2e-080
gb|BQ468695.1|BQ468695 HM02A04r HM Hordeum vulgare subsp. v... 245 2e-074
gb|BG310018.1|BG310018 HVSMEc0016B06f Hordeum vulgare seedl... 275 2e-073
gb|BJ449299.1|BJ449299 BJ449299 K. Sato unpublished cDNA li... 244 4e-070
gb|BJ452141.1|BJ452141 BJ452141 K. Sato unpublished cDNA li... 203 9e-058
gb|BE216587.2|BE216587 HV_CEb0010O06f Hordeum vulgare seedl... 183 1e-048
gb|BQ660965.1|BQ660965 HM01E18w HM Hordeum vulgare subsp. v... 130 6e-040
gb|BI777732.2|BI777732 EBro08_SQ001_L03_R root, 3 week, dro... 138 2e-034
gb|CB879914.1|CB879914 HP10M02T HP Hordeum vulgare subsp. v... 100 8e-031
gb|BQ465136.1|BQ465136 HU02M04r HU Hordeum vulgare subsp. v... 103 6e-026
>gb|BE216598.1|BE216598 HV_CEb0010O18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010O18f, mRNA sequence
Length = 725
Score = 502 bits (1090), Expect = e-141
Identities = 207/234 (88%), Positives = 213/234 (91%)
Frame = +2 / +1
Query: 98 GTIYLDVGTKYTSILARAACSAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVAAF 277
GTIYLDVGTKYTSILARAAC+AFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVAAF
Sbjct: 22 GTIYLDVGTKYTSILARAACAAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVAAF 201
Query: 278 VISNTISATPFLILICFLSGTICYFMVRLHPGFEHYIFFVLNLYASVTVVESLMMAIASV 457
VI+NTISA PFL+LICFLSGT+CYFMVRLHPGF HYIFFVLNLYASVTVVESLMMAIASV
Sbjct: 202 VIANTISALPFLVLICFLSGTVCYFMVRLHPGFSHYIFFVLNLYASVTVVESLMMAIASV 381
Query: 458 IPNFLMXXXXXXXXXXXFMLVSGYFRLPYDIPKPFWRYPMQYISFHYWALQGQCQNDMKG 637
IPNFLM FMLVSGYFRLPYDIPK FWRYPMQYISFHYWALQGQCQNDM G
Sbjct: 382 IPNFLMGIIIGAGIQGIFMLVSGYFRLPYDIPKVFWRYPMQYISFHYWALQGQCQNDMDG 561
Query: 638 LAVDNQDPDQPKIPGDFILKYIFQINVDRSKWIDLSVIFSMIFIYRILFFLMIK 799
L DNQ PDQPKIPG FILKYIFQINV RS WIDLSVIFSMIFIYR+LFF+MIK
Sbjct: 562 LLFDNQYPDQPKIPGQFILKYIFQINVHRSXWIDLSVIFSMIFIYRMLFFIMIK 723
Score = 310 bits (671), Expect(2) = 3e-091
Identities = 117/169 (69%), Positives = 137/169 (81%)
Frame = +1 / +3
Query: 124 QIHIHPGQGCLLRVRLWVRYVHVHWRIPFVR*RNEGLPAGTAERALRCRGVCHQQHHLSH 303
QIHIHPGQG + +RLW+R++HVHWRIPF+R RNEGLPAG AE ALRC +CH QHHL
Sbjct: 48 QIHIHPGQGSMCSIRLWIRHLHVHWRIPFIRGRNEGLPAGAAEWALRCCSICHCQHHLGS 227
Query: 304 AVPDSDMLLVGNHMLLHGAPPSWLRALHLLRLEPVRQRYGGRELDDGDCQCHSKFPHGYH 483
A+P DML V + MLLHGAP SW LHLLRLEP+RQ + G ELDDG C+CH++FPHG+H
Sbjct: 228 AIPGPDMLPVRDSMLLHGAPSSWFLTLHLLRLEPLRQCHRG*ELDDGHCKCHTQFPHGHH 407
Query: 484 HRGRDSGNIHAGLWLLQTSIRHPEALLEIPHAVHQLPLLGTAGPVPERH 630
HR +SGNIHA LW+LQTS+ HP+ LEIPHAVHQLPLLGT GP+PE H
Sbjct: 408 HRSWNSGNIHACLWILQTSV*HPQGFLEIPHAVHQLPLLGTTGPMPE*H 554
Score = 268 bits (580), Expect(2) = 3e-078
Identities = 117/181 (64%), Positives = 136/181 (75%)
Frame = -1 / -3
Query: 640 EALHVVLALALQCPVVEADVLHGVSPKGLRDVVWKSEVARDQHEYSLNPGPYDDTHEEIW 461
E +HV+LALAL CPV+EADVLHGVSP+ L DV+ KSEV+RD+HEYSLN YDD HEEI
Sbjct: 564 ETVHVILALAL*CPVMEADVLHGVSPENLGDVIRKSEVSRDKHEYSLNSSSYDDAHEEIG 385
Query: 460 NDTGNRHHQALDHRNAGXXXXXXXXXVLEARMEAHHEVAYGSRQEAYQNQERRG*DGVAD 281
DT N HHQAL+H + G V E RM+AHHEVAY QEAYQ+QE + DGV +
Sbjct: 384 YDTCNGHHQALNHGDTGVEVQDEEDVV*ETRMKAHHEVAYCP*QEAYQDQEWQSRDGVGN 205
Query: 280 DKRRDTVVPVQPFPLEDLHFFNERRESSNGHERNEPKDERGAGSPGQDGCVFGADVQVDR 101
DK +TVVP+QP PLEDLHFF+E RESSNGHE +E KDE PGQDGCVFGA++QVD
Sbjct: 204 DKCCNTVVPIQPLPLEDLHFFHE*RESSNGHEGDESKDECCTCCPGQDGCVFGANIQVDC 25
Query: 100 A 98
A
Sbjct: 24 A 22
Score = 256 bits (554), Expect(2) = e-111
Identities = 112/125 (89%), Positives = 114/125 (91%)
Frame = -2 / -1
Query: 471 RKFGMTLAIAIIKLSTTVTLAYRFKTKKM*CSKPGWRRTMK*HMVPDKKHIRIRNGVAEM 292
RK GMTLA+AIIKLSTTVTLA RFKTKKM*C KPG RRTMK*H VPD+KHIR RNG AEM
Sbjct: 395 RKLGMTLAMAIIKLSTTVTLA*RFKTKKM*CEKPG*RRTMK*HTVPDRKHIRTRNGRAEM 216
Query: 291 VLLMTNAATP*CPFSRSRWKTFISSTNEGNPPMDMNVTNPKTNAEQAALARMDVYLVPTS 112
VL MTNAATP*CPFSRSRWKTFISSTNEGNPPMDM VTNPKTNA AALARMDVYLVPTS
Sbjct: 215 VLAMTNAATP*CPFSRSRWKTFISSTNEGNPPMDMKVTNPKTNAAHAALARMDVYLVPTS 36
Query: 111 R*IVP 97
R*IVP
Sbjct: 35 R*IVP 21
Score = 196 bits (423), Expect = 1e-049
Identities = 93/165 (56%), Positives = 98/165 (59%)
Frame = +3 / +2
Query: 111 WTSAPNTHPSWPGLPAPRSSLGSLRSCPLEDXXXXXXXXXXXXGNG*TGTTVSRRLSSAT 290
W APNTHPSWPG SSL S SCPLED G+G* GTTV + LS T
Sbjct: 35 WMLAPNTHPSWPGQHVQHSSLDSSPSCPLEDSLHSWKK*RSSSGSG*MGTTVLQHLSLPT 214
Query: 291 PSQPRRS*F*YASCREPYATSWCASILAXXXXXXXXXXCTPALRWSRA**WRLPVSFQIS 470
PS+ S *YASC+ YATSWCA IL TP W RA**W L VS+ IS
Sbjct: 215 PSRLCHSWS*YASCQGQYATSWCAFILVSHTTSSSS*TSTPVSPWLRA**WPLQVSYPIS 394
Query: 471 SWVSS*GPGFREYSCWSLATSDFHTTSRSPFGDTPCSTSASTTGH 605
SW SS* FREYSC SL TSDF TS GDTPCSTSAS TGH
Sbjct: 395 SWASS*ELEFREYSCLSLDTSDFRMTSPRFSGDTPCSTSASITGH 529
Score = 165 bits (355), Expect(2) = e-111
Identities = 63/78 (80%), Positives = 64/78 (82%)
Frame = -2 / -1
Query: 747 TDRSIHLERSTLIWKMYLRMKSPGILGWSGSWLSTARPFMSFWHWPCSAQ*WKLMYCMGY 568
TDRSIH +R TLIWKMY M PGI GWSG WLS RP MSFWHWPCSAQ*WKLMYCMGY
Sbjct: 671 TDRSIHXDRCTLIWKMYFSMNCPGIFGWSGYWLSNRRPSMSFWHWPCSAQ*WKLMYCMGY 492
Query: 567 LQKGFGMSYGSLK*PETS 514
LQK GMSYGSLK PETS
Sbjct: 491 LQKTLGMSYGSLKYPETS 438
Score = 84.9 bits (179), Expect(4) = 2e-046
Identities = 41/60 (68%), Positives = 42/60 (70%)
Frame = -3 / -2
Query: 371 QDGGAP*SSIWFPTRSISESGTAWLRWCC**QTPRHRSARSAVPAGRPSFLQRTKGILQW 192
QD GAP*SSI T SIS G A RWC *Q +HRSA SA PAGRPSFL R KGILQW
Sbjct: 295 QDEGAP*SSILSLTGSISGPGMAEPRWCWQ*QMLQHRSAHSAAPAGRPSFLPRMKGILQW 116
Score = 82.2 bits (173), Expect(4) = 2e-046
Identities = 39/56 (69%), Positives = 43/56 (76%)
Frame = -3 / -2
Query: 614 GPAVPSSGS*CTAWGISKRASGCRMEV*SSQRPA*IFPESRPL**YP*GNLE*HWQ 447
GP VPS+GS*CTAWGIS++ GC EV*S QR A*IFPE + L** P*GN *H Q
Sbjct: 538 GPVVPSNGS*CTAWGISRKPWGCHTEV*SIQRQA*IFPEFQLL**CP*GNWV*HLQ 371
Score = 46.0 bits (94), Expect(2) = 3e-091
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1 / +3
Query: 685 LHPQVHLPDQRGPFQVDRPVGH 750
+H +VHLPDQR P VDRPVGH
Sbjct: 609 VHTEVHLPDQRAPVXVDRPVGH 674
Score = 44.1 bits (90), Expect(2) = 3e-078
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -1 / -3
Query: 751 NDRQVDPLGTVHVDLEDVLEDEVP 680
+DRQVDPL VHVDLEDVL+ E+P
Sbjct: 675 DDRQVDPL*PVHVDLEDVLQYELP 604
Score = 40.5 bits (82), Expect(4) = 2e-046
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = -3 / -2
Query: 752 K*PTGRSTWNGPR*SGRCT*G*SPRGS 672
+*PTGRST G R*SGRCT *+ RGS
Sbjct: 676 R*PTGRSTXTGAR*SGRCTSV*TARGS 596
Score = 35.4 bits (71), Expect(4) = 2e-046
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / -2
Query: 149 PWPGWMCIW 123
PWPGWMCIW
Sbjct: 73 PWPGWMCIW 47
>gb|BQ468452.1|BQ468452 HM01E18T HM Hordeum vulgare subsp. vulgare cDNA clone HM01E18
5-PRIME, mRNA sequence
Length = 620
Score = 437 bits (949), Expect = e-122
Identities = 178/206 (86%), Positives = 185/206 (89%)
Frame = +2 / +2
Query: 203 FPSFVEEMKVFQRERLNGHYGVAAFVISNTISATPFLILICFLSGTICYFMVRLHPGFEH 382
FPSFVEEMKVFQRERLNGHYGVAAFVI+NTISA PFL+LICFLSGT+CYFMVRLHPGF H
Sbjct: 2 FPSFVEEMKVFQRERLNGHYGVAAFVIANTISALPFLVLICFLSGTVCYFMVRLHPGFSH 181
Query: 383 YIFFVLNLYASVTVVESLMMAIASVIPNFLMXXXXXXXXXXXFMLVSGYFRLPYDIPKPF 562
YIFFVLNLYASVTVVESLMMAIASVIPNFLM FMLVSGYFRLPYDIPK F
Sbjct: 182 YIFFVLNLYASVTVVESLMMAIASVIPNFLMGIIIGAGIQGIFMLVSGYFRLPYDIPKVF 361
Query: 563 WRYPMQYISFHYWALQGQCQNDMKGLAVDNQDPDQPKIPGDFILKYIFQINVDRSKWIDL 742
WRYPMQYISFHYWALQGQCQNDM GL DNQ PDQPKIPG FILKYIFQINV RSKWIDL
Sbjct: 362 WRYPMQYISFHYWALQGQCQNDMDGLLFDNQYPDQPKIPGQFILKYIFQINVHRSKWIDL 541
Query: 743 SVIFSMIFIYRILFFLMIKINEDXLP 820
SVIFSMIFIYR+LFF+MIK+NED +P
Sbjct: 542 SVIFSMIFIYRMLFFIMIKVNEDVMP 619
Score = 253 bits (546), Expect(2) = 2e-074
Identities = 99/143 (69%), Positives = 114/143 (79%)
Frame = +1 / +1
Query: 202 IPFVR*RNEGLPAGTAERALRCRGVCHQQHHLSHAVPDSDMLLVGNHMLLHGAPPSWLRA 381
IPF+R RNEGLPAGTAE ALRC +CH QHHL A+P DML V + MLLHGAP SW
Sbjct: 1 IPFIRGRNEGLPAGTAEWALRCCSICHCQHHLGSAIPGPDMLPVRDSMLLHGAPSSWFLT 180
Query: 382 LHLLRLEPVRQRYGGRELDDGDCQCHSKFPHGYHHRGRDSGNIHAGLWLLQTSIRHPEAL 561
LHLLRLEP+RQ + G ELDDG C+CH++FPHG+HHR +SGNIHA LW+LQTS+ HP+
Sbjct: 181 LHLLRLEPLRQCHRG*ELDDGHCKCHTQFPHGHHHRSWNSGNIHACLWILQTSV*HPQGF 360
Query: 562 LEIPHAVHQLPLLGTAGPVPERH 630
LEI HAVHQLPLLGT GP+PE H
Sbjct: 361 LEISHAVHQLPLLGTTGPMPE*H 429
Score = 215 bits (464), Expect(2) = 3e-062
Identities = 93/146 (63%), Positives = 110/146 (75%)
Frame = -1 / -2
Query: 640 EALHVVLALALQCPVVEADVLHGVSPKGLRDVVWKSEVARDQHEYSLNPGPYDDTHEEIW 461
E +HV+LALAL CPV+EADVLHG+SP+ L DV+ KSEV+RD+HEYSLN YDD HEEI
Sbjct: 439 ETVHVILALAL*CPVMEADVLHGISPENLGDVIRKSEVSRDKHEYSLNSSSYDDAHEEIG 260
Query: 460 NDTGNRHHQALDHRNAGXXXXXXXXXVLEARMEAHHEVAYGSRQEAYQNQERRG*DGVAD 281
DT N HHQAL+H + G V E RM+AHHEVAY QEAYQ+QE + DGV +
Sbjct: 259 YDTCNGHHQALNHGDTGVEVQDEEDVV*ETRMKAHHEVAYCP*QEAYQDQEWQSRDGVGN 80
Query: 280 DKRRDTVVPVQPFPLEDLHFFNERRE 203
DK +TVVP+QPFPLEDLHFF+E RE
Sbjct: 79 DKCCNTVVPIQPFPLEDLHFFHE*RE 2
Score = 183 bits (395), Expect(2) = 3e-089
Identities = 80/90 (88%), Positives = 82/90 (91%)
Frame = -2 / -3
Query: 471 RKFGMTLAIAIIKLSTTVTLAYRFKTKKM*CSKPGWRRTMK*HMVPDKKHIRIRNGVAEM 292
RK GMTLA+AIIKLSTTVTLA RFKTKKM*C KPG RRTMK*H VPD+KHIR RNG AEM
Sbjct: 270 RKLGMTLAMAIIKLSTTVTLA*RFKTKKM*CEKPG*RRTMK*HTVPDRKHIRTRNGRAEM 91
Query: 291 VLLMTNAATP*CPFSRSRWKTFISSTNEGN 202
VL MTNAATP*CPFSRSRWKTFISSTNEGN
Sbjct: 90 VLAMTNAATP*CPFSRSRWKTFISSTNEGN 1
Score = 166 bits (356), Expect(2) = 3e-089
Identities = 63/78 (80%), Positives = 64/78 (82%)
Frame = -2 / -3
Query: 747 TDRSIHLERSTLIWKMYLRMKSPGILGWSGSWLSTARPFMSFWHWPCSAQ*WKLMYCMGY 568
TDRSIH +R TLIWKMY M PGI GWSG WLS RP MSFWHWPCSAQ*WKLMYCMGY
Sbjct: 546 TDRSIHFDRCTLIWKMYFSMNCPGIFGWSGYWLSNRRPSMSFWHWPCSAQ*WKLMYCMGY 367
Query: 567 LQKGFGMSYGSLK*PETS 514
LQK GMSYGSLK PETS
Sbjct: 366 LQKTLGMSYGSLKYPETS 313
Score = 149 bits (319), Expect = 3e-035
Identities = 72/122 (59%), Positives = 76/122 (62%)
Frame = +3 / +3
Query: 240 GNG*TGTTVSRRLSSATPSQPRRS*F*YASCREPYATSWCASILAXXXXXXXXXXCTPAL 419
GNG* GTTV + LS TPS+ S *YASC+ YATSWCA IL TP
Sbjct: 39 GNG*MGTTVLQHLSLPTPSRLCHSWS*YASCQGQYATSWCAFILVSHTTSSSS*TSTPVS 218
Query: 420 RWSRA**WRLPVSFQISSWVSS*GPGFREYSCWSLATSDFHTTSRSPFGDTPCSTSASTT 599
W RA**W L VS+ ISSW SS* FREYSC SL TSDF TS GD PCSTSAS T
Sbjct: 219 PWLRA**WPLQVSYPISSWASS*ELEFREYSCLSLDTSDFRMTSPRFSGDIPCSTSASIT 398
Query: 600 GH 605
GH
Sbjct: 399 GH 404
Score = 79.0 bits (166), Expect(3) = 1e-037
Identities = 38/56 (67%), Positives = 42/56 (75%)
Frame = -3 / -1
Query: 614 GPAVPSSGS*CTAWGISKRASGCRMEV*SSQRPA*IFPESRPL**YP*GNLE*HWQ 447
GP VPS+GS*CTAW IS++ GC EV*S QR A*IFPE + L** P*GN *H Q
Sbjct: 413 GPVVPSNGS*CTAWDISRKPWGCHTEV*SIQRQA*IFPEFQLL**CP*GNWV*HLQ 246
Score = 75.8 bits (159), Expect(3) = 1e-037
Identities = 38/56 (67%), Positives = 39/56 (69%)
Frame = -3 / -1
Query: 371 QDGGAP*SSIWFPTRSISESGTAWLRWCC**QTPRHRSARSAVPAGRPSFLQRTKG 204
QD GAP*SSI T SIS G A RWC *Q +HRSA SAVPAGRPSFL R KG
Sbjct: 170 QDEGAP*SSILSLTGSISGPGMAEPRWCWQ*QMLQHRSAHSAVPAGRPSFLPRMKG 3
Score = 46.9 bits (96), Expect(2) = 2e-074
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1 / +1
Query: 685 LHPQVHLPDQRGPFQVDRPVGH 750
+H +VHLPDQR P +VDRPVGH
Sbjct: 484 VHTEVHLPDQRAPVKVDRPVGH 549
Score = 44.1 bits (90), Expect(2) = 3e-062
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -1 / -2
Query: 751 NDRQVDPLGTVHVDLEDVLEDEVP 680
+DRQVDPL VHVDLEDVL+ E+P
Sbjct: 550 DDRQVDPL*PVHVDLEDVLQYELP 479
Score = 40.5 bits (82), Expect(3) = 1e-037
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = -3 / -1
Query: 752 K*PTGRSTWNGPR*SGRCT*G*SPRGS 672
+*PTGRST G R*SGRCT *+ RGS
Sbjct: 551 R*PTGRSTLTGAR*SGRCTSV*TARGS 471
>gb|BJ459695.1|BJ459695 BJ459695 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37o18 3', mRNA sequence
Length = 635
Score = 313 bits (677), Expect(2) = 1e-094
Identities = 128/154 (83%), Positives = 134/154 (87%)
Frame = +2 / -3
Query: 407 YASVTVVESLMMAIASVIPNFLMXXXXXXXXXXXFMLVSGYFRLPYDIPKPFWRYPMQYI 586
YASVTVVESLMMAIASVIPNFLM FMLVSGYFRLPYDIPK FWRYPMQYI
Sbjct: 633 YASVTVVESLMMAIASVIPNFLMGIIIGAGIQGIFMLVSGYFRLPYDIPKVFWRYPMQYI 454
Query: 587 SFHYWALQGQCQNDMKGLAVDNQDPDQPKIPGDFILKYIFQINVDRSKWIDLSVIFSMIF 766
SFHYWALQGQCQNDM GL DNQ PDQPKIPG FILKYIFQINV RSKWIDLSVIFSMIF
Sbjct: 453 SFHYWALQGQCQNDMDGLLFDNQYPDQPKIPGQFILKYIFQINVHRSKWIDLSVIFSMIF 274
Query: 767 IYRILFFLMIKINEDXLPWIRGHIARKRMQKKGP 868
IYR+LFF+MIK+NED +PWIRG+IARKR+QKK P
Sbjct: 273 IYRMLFFIMIKVNEDVMPWIRGYIARKRLQKKVP 172
Score = 166 bits (356), Expect(4) = 1e-059
Identities = 63/78 (80%), Positives = 64/78 (82%)
Frame = -2 / +2
Query: 747 TDRSIHLERSTLIWKMYLRMKSPGILGWSGSWLSTARPFMSFWHWPCSAQ*WKLMYCMGY 568
TDRSIH +R TLIWKMY M PGI GWSG WLS RP MSFWHWPCSAQ*WKLMYCMGY
Sbjct: 293 TDRSIHFDRCTLIWKMYFSMNCPGIFGWSGYWLSNRRPSMSFWHWPCSAQ*WKLMYCMGY 472
Query: 567 LQKGFGMSYGSLK*PETS 514
LQK GMSYGSLK PETS
Sbjct: 473 LQKTLGMSYGSLKYPETS 526
Score = 137 bits (294), Expect(4) = 4e-048
Identities = 51/75 (68%), Positives = 62/75 (82%)
Frame = +1 / -2
Query: 406 VRQRYGGRELDDGDCQCHSKFPHGYHHRGRDSGNIHAGLWLLQTSIRHPEALLEIPHAVH 585
+RQ + G ELDDG C+CH++FPHG+HHR +SGNIHA LW+LQTS+ HP+ LEI HAVH
Sbjct: 634 LRQCHRG*ELDDGHCKCHTQFPHGHHHRSWNSGNIHACLWILQTSV*HPQGFLEISHAVH 455
Query: 586 QLPLLGTAGPVPERH 630
QLPLLGT GP+PE H
Sbjct: 454 QLPLLGTTGPMPE*H 410
Score = 129 bits (277), Expect(4) = 4e-045
Identities = 52/77 (67%), Positives = 62/77 (80%)
Frame = -1 / +1
Query: 640 EALHVVLALALQCPVVEADVLHGVSPKGLRDVVWKSEVARDQHEYSLNPGPYDDTHEEIW 461
E +HV+LALAL CPV+EADVLHG+SP+ L DV+ KSEV+RD+HEYSLN YDD HEEI
Sbjct: 400 ETVHVILALAL*CPVMEADVLHGISPENLGDVIRKSEVSRDKHEYSLNSSSYDDAHEEIG 579
Query: 460 NDTGNRHHQALDHRNAG 410
DT N HHQAL+H + G
Sbjct: 580 YDTCNGHHQALNHGDTG 630
Score = 79.0 bits (166), Expect(3) = 6e-022
Identities = 38/56 (67%), Positives = 42/56 (75%)
Frame = -3 / +3
Query: 614 GPAVPSSGS*CTAWGISKRASGCRMEV*SSQRPA*IFPESRPL**YP*GNLE*HWQ 447
GP VPS+GS*CTAW IS++ GC EV*S QR A*IFPE + L** P*GN *H Q
Sbjct: 426 GPVVPSNGS*CTAWDISRKPWGCHTEV*SIQRQA*IFPEFQLL**CP*GNWV*HLQ 593
Score = 54.7 bits (113), Expect(2) = 1e-094
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2 / -3
Query: 848 RMQKKGPTPTMGKTPSLRGYVVDPELGSNEG*R 946
R + + P +GKTPSLRGYVVDPELG NEG*+
Sbjct: 198 RKRLQKKVPAIGKTPSLRGYVVDPELGPNEG*K 100
Score = 46.9 bits (96), Expect(4) = 4e-048
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1 / -2
Query: 685 LHPQVHLPDQRGPFQVDRPVGH 750
+H +VHLPDQR P +VDRPVGH
Sbjct: 355 VHTEVHLPDQRAPVKVDRPVGH 290
Score = 45.5 bits (93), Expect(4) = 1e-059
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -2 / +2
Query: 942 *PSLEPSSGSTT*PLSEGVLPIVG 871
*PSL PSSGSTT*PL EGVLP+ G
Sbjct: 104 *PSLGPSSGSTT*PLREGVLPMAG 175
Score = 44.1 bits (90), Expect(4) = 4e-045
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -1 / +1
Query: 751 NDRQVDPLGTVHVDLEDVLEDEVP 680
+DRQVDPL VHVDLEDVL+ E+P
Sbjct: 289 DDRQVDPL*PVHVDLEDVLQYELP 360
Score = 42.8 bits (87), Expect(4) = 1e-059
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -2 / +2
Query: 471 RKFGMTLAIAIIKLSTTVTLA 409
RK GMTLA+AIIKLSTTVTLA
Sbjct: 569 RKLGMTLAMAIIKLSTTVTLA 631
Score = 40.5 bits (82), Expect(3) = 6e-022
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = -3 / +3
Query: 752 K*PTGRSTWNGPR*SGRCT*G*SPRGS 672
+*PTGRST G R*SGRCT *+ RGS
Sbjct: 288 R*PTGRSTLTGAR*SGRCTSV*TARGS 368
Score = 35.0 bits (70), Expect(4) = 4e-045
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1 / +1
Query: 943 LALVGTELRIDDVASQRRRLA 881
LA + TELRI DVASQ RRLA
Sbjct: 103 LAFIRTELRIHDVASQGRRLA 165
Score = 33.1 bits (66), Expect(4) = 4e-048
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1 / -2
Query: 805 RGRAAVDPRPHREEEDAEEG 864
RGR A+DP HREE+ +EEG
Sbjct: 235 RGRDALDPGLHREEKASEEG 176
Score = 33.1 bits (66), Expect(4) = 1e-059
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -1 / +1
Query: 871 GRALLLHPLPRDVAADPRQXV 809
GR LLL P PRDVA DP V
Sbjct: 169 GRHLLLKPFPRDVAPDPGHHV 231
Score = 30.9 bits (61), Expect(4) = 4e-048
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +1 / -2
Query: 883 QDAFAERLRRRSGAR 927
QDAF ERLRR SGAR
Sbjct: 163 QDAFPERLRRGSGAR 119
Score = 29.5 bits (58), Expect(4) = 4e-045
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -2 / +2
Query: 867 GPFFCILFLAMWPRIHGSXSS 805
G FF LFLAM PRI G SS
Sbjct: 173 GTFF*SLFLAM*PRIQGITSS 235
Score = 26.3 bits (51), Expect(3) = 6e-022
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3 / +3
Query: 965 PKRTSTTSSPRWNRAPDRRRSLSAK 891
P+ SS +RAPD RRSLS K
Sbjct: 81 PQAYHLLSSLH*DRAPDPRRSLSGK 155
>gb|BJ456765.1|BJ456765 BJ456765 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23f10 3', mRNA sequence
Length = 702
Score = 298 bits (645), Expect(2) = 3e-090
Identities = 121/147 (82%), Positives = 127/147 (86%)
Frame = +2 / -2
Query: 428 ESLMMAIASVIPNFLMXXXXXXXXXXXFMLVSGYFRLPYDIPKPFWRYPMQYISFHYWAL 607
ESLMMAIASVIPNFLM FMLVSGYFRLPYDIPK FWRYPMQYISFHYWAL
Sbjct: 701 ESLMMAIASVIPNFLMGIIIGAGIQGIFMLVSGYFRLPYDIPKVFWRYPMQYISFHYWAL 522
Query: 608 QGQCQNDMKGLAVDNQDPDQPKIPGDFILKYIFQINVDRSKWIDLSVIFSMIFIYRILFF 787
QGQCQNDM GL DNQ PDQPKIPG FILKYIFQINV RSKWIDLSVIFSMIFIYR+LFF
Sbjct: 521 QGQCQNDMDGLLFDNQYPDQPKIPGQFILKYIFQINVHRSKWIDLSVIFSMIFIYRMLFF 342
Query: 788 LMIKINEDXLPWIRGHIARKRMQKKGP 868
+MIK+NED +PWIRG+IARKR+QKK P
Sbjct: 341 IMIKVNEDVMPWIRGYIARKRLQKKVP 261
Score = 166 bits (356), Expect(4) = 6e-056
Identities = 63/78 (80%), Positives = 64/78 (82%)
Frame = -2 / +1
Query: 747 TDRSIHLERSTLIWKMYLRMKSPGILGWSGSWLSTARPFMSFWHWPCSAQ*WKLMYCMGY 568
TDRSIH +R TLIWKMY M PGI GWSG WLS RP MSFWHWPCSAQ*WKLMYCMGY
Sbjct: 382 TDRSIHFDRCTLIWKMYFSMNCPGIFGWSGYWLSNRRPSMSFWHWPCSAQ*WKLMYCMGY 561
Query: 567 LQKGFGMSYGSLK*PETS 514
LQK GMSYGSLK PETS
Sbjct: 562 LQKTLGMSYGSLKYPETS 615
Score = 133 bits (284), Expect(4) = 9e-047
Identities = 48/67 (71%), Positives = 57/67 (85%)
Frame = +1 / -1
Query: 430 ELDDGDCQCHSKFPHGYHHRGRDSGNIHAGLWLLQTSIRHPEALLEIPHAVHQLPLLGTA 609
ELDDG C+CH++FPHG+HHR +SGNIHA LW+LQTS+ HP+ LEI HAVHQLPLLGT
Sbjct: 699 ELDDGHCKCHTQFPHGHHHRSWNSGNIHACLWILQTSV*HPQGFLEISHAVHQLPLLGTT 520
Query: 610 GPVPERH 630
GP+PE H
Sbjct: 519 GPMPE*H 499
Score = 123 bits (263), Expect(4) = 3e-043
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = -1 / +3
Query: 640 EALHVVLALALQCPVVEADVLHGVSPKGLRDVVWKSEVARDQHEYSLNPGPYDDTHEEIW 461
E +HV+LALAL CPV+EADVLHG+SP+ L DV+ KSEV+RD+HEYSLN YDD HEEI
Sbjct: 489 ETVHVILALAL*CPVMEADVLHGISPENLGDVIRKSEVSRDKHEYSLNSSSYDDAHEEIG 668
Query: 460 NDTGNRHHQAL 428
DT N HHQAL
Sbjct: 669 YDTCNGHHQAL 701
Score = 79.0 bits (166), Expect(3) = 7e-022
Identities = 38/56 (67%), Positives = 42/56 (75%)
Frame = -3 / +2
Query: 614 GPAVPSSGS*CTAWGISKRASGCRMEV*SSQRPA*IFPESRPL**YP*GNLE*HWQ 447
GP VPS+GS*CTAW IS++ GC EV*S QR A*IFPE + L** P*GN *H Q
Sbjct: 515 GPVVPSNGS*CTAWDISRKPWGCHTEV*SIQRQA*IFPEFQLL**CP*GNWV*HLQ 682
Score = 54.7 bits (113), Expect(2) = 3e-090
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2 / -2
Query: 848 RMQKKGPTPTMGKTPSLRGYVVDPELGSNEG*R 946
R + + P +GKTPSLRGYVVDPELG NEG*+
Sbjct: 287 RKRLQKKVPAIGKTPSLRGYVVDPELGPNEG*K 189
Score = 46.9 bits (96), Expect(4) = 9e-047
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1 / -1
Query: 685 LHPQVHLPDQRGPFQVDRPVGH 750
+H +VHLPDQR P +VDRPVGH
Sbjct: 444 VHTEVHLPDQRAPVKVDRPVGH 379
Score = 45.5 bits (93), Expect(4) = 6e-056
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -2 / +1
Query: 942 *PSLEPSSGSTT*PLSEGVLPIVG 871
*PSL PSSGSTT*PL EGVLP+ G
Sbjct: 193 *PSLGPSSGSTT*PLREGVLPMAG 264
Score = 44.1 bits (90), Expect(4) = 3e-043
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -1 / +3
Query: 751 NDRQVDPLGTVHVDLEDVLEDEVP 680
+DRQVDPL VHVDLEDVL+ E+P
Sbjct: 378 DDRQVDPL*PVHVDLEDVLQYELP 449
Score = 40.5 bits (82), Expect(3) = 7e-022
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = -3 / +2
Query: 752 K*PTGRSTWNGPR*SGRCT*G*SPRGS 672
+*PTGRST G R*SGRCT *+ RGS
Sbjct: 377 R*PTGRSTLTGAR*SGRCTSV*TARGS 457
Score = 35.0 bits (70), Expect(4) = 3e-043
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1 / +3
Query: 943 LALVGTELRIDDVASQRRRLA 881
LA + TELRI DVASQ RRLA
Sbjct: 192 LAFIRTELRIHDVASQGRRLA 254
Score = 33.1 bits (66), Expect(4) = 9e-047
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1 / -1
Query: 805 RGRAAVDPRPHREEEDAEEG 864
RGR A+DP HREE+ +EEG
Sbjct: 324 RGRDALDPGLHREEKASEEG 265
Score = 33.1 bits (66), Expect(4) = 6e-056
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -1 / +3
Query: 871 GRALLLHPLPRDVAADPRQXV 809
GR LLL P PRDVA DP V
Sbjct: 258 GRHLLLKPFPRDVAPDPGHHV 320
Score = 30.9 bits (61), Expect(4) = 9e-047
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +1 / -1
Query: 883 QDAFAERLRRRSGAR 927
QDAF ERLRR SGAR
Sbjct: 252 QDAFPERLRRGSGAR 208
Score = 30.4 bits (60), Expect(4) = 6e-056
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -2 / +1
Query: 471 RKFGMTLAIAIIKLS 427
RK GMTLA+AIIKLS
Sbjct: 658 RKLGMTLAMAIIKLS 702
Score = 29.5 bits (58), Expect(4) = 3e-043
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -2 / +1
Query: 867 GPFFCILFLAMWPRIHGSXSS 805
G FF LFLAM PRI G SS
Sbjct: 262 GTFF*SLFLAM*PRIQGITSS 324
Score = 26.3 bits (51), Expect(3) = 7e-022
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3 / +2
Query: 965 PKRTSTTSSPRWNRAPDRRRSLSAK 891
P+ SS +RAPD RRSLS K
Sbjct: 170 PQAYHLLSSLH*DRAPDPRRSLSGK 244
>gb|CA015715.1|CA015715 HV12G12u HV Hordeum vulgare subsp. vulgare cDNA clone HV12G12
3-PRIME, mRNA sequence
Length = 546
Score = 265 bits (574), Expect(2) = 2e-080
Identities = 104/119 (87%), Positives = 110/119 (92%)
Frame = +2 / -2
Query: 512 MLVSGYFRLPYDIPKPFWRYPMQYISFHYWALQGQCQNDMKGLAVDNQDPDQPKIPGDFI 691
MLVSGYFRLPYDIPK FWRYPMQYISFHYWALQGQCQNDM GL DNQ PDQPKIPG FI
Sbjct: 545 MLVSGYFRLPYDIPKVFWRYPMQYISFHYWALQGQCQNDMDGLLFDNQYPDQPKIPGQFI 366
Query: 692 LKYIFQINVDRSKWIDLSVIFSMIFIYRILFFLMIKINEDXLPWIRGHIARKRMQKKGP 868
LKYIFQINV RSKWIDLSVIFSMIFIYR+LFF+MIK+NED +PWIRG+IARKR+QKK P
Sbjct: 365 LKYIFQINVHRSKWIDLSVIFSMIFIYRMLFFIMIKVNEDVMPWIRGYIARKRLQKKVP 189
Score = 166 bits (356), Expect(3) = 3e-052
Identities = 63/78 (80%), Positives = 64/78 (82%)
Frame = -2 / +1
Query: 747 TDRSIHLERSTLIWKMYLRMKSPGILGWSGSWLSTARPFMSFWHWPCSAQ*WKLMYCMGY 568
TDRSIH +R TLIWKMY M PGI GWSG WLS RP MSFWHWPCSAQ*WKLMYCMGY
Sbjct: 310 TDRSIHFDRCTLIWKMYFSMNCPGIFGWSGYWLSNRRPSMSFWHWPCSAQ*WKLMYCMGY 489
Query: 567 LQKGFGMSYGSLK*PETS 514
LQK GMSYGSLK PETS
Sbjct: 490 LQKTLGMSYGSLKYPETS 543
Score = 76.7 bits (161), Expect(4) = 1e-029
Identities = 30/43 (69%), Positives = 38/43 (88%)
Frame = -1 / +3
Query: 640 EALHVVLALALQCPVVEADVLHGVSPKGLRDVVWKSEVARDQH 512
E +HV+LALAL CPV+EADVLHG+SP+ L DV+ KSEV+RD+H
Sbjct: 417 ETVHVILALAL*CPVMEADVLHGISPENLGDVIRKSEVSRDKH 545
Score = 76.7 bits (161), Expect(4) = 3e-030
Identities = 29/40 (72%), Positives = 33/40 (82%)
Frame = +1 / -1
Query: 511 HAGLWLLQTSIRHPEALLEIPHAVHQLPLLGTAGPVPERH 630
HA LW+LQTS+ HP+ LEI HAVHQLPLLGT GP+PE H
Sbjct: 546 HACLWILQTSV*HPQGFLEISHAVHQLPLLGTTGPMPE*H 427
Score = 54.7 bits (113), Expect(2) = 2e-080
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2 / -2
Query: 848 RMQKKGPTPTMGKTPSLRGYVVDPELGSNEG*R 946
R + + P +GKTPSLRGYVVDPELG NEG*+
Sbjct: 215 RKRLQKKVPAIGKTPSLRGYVVDPELGPNEG*K 117
Score = 46.9 bits (96), Expect(4) = 3e-030
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1 / -1
Query: 685 LHPQVHLPDQRGPFQVDRPVGH 750
+H +VHLPDQR P +VDRPVGH
Sbjct: 372 VHTEVHLPDQRAPVKVDRPVGH 307
Score = 45.5 bits (93), Expect(3) = 3e-052
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -2 / +1
Query: 942 *PSLEPSSGSTT*PLSEGVLPIVG 871
*PSL PSSGSTT*PL EGVLP+ G
Sbjct: 121 *PSLGPSSGSTT*PLREGVLPMAG 192
Score = 44.1 bits (90), Expect(4) = 1e-029
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -1 / +3
Query: 751 NDRQVDPLGTVHVDLEDVLEDEVP 680
+DRQVDPL VHVDLEDVL+ E+P
Sbjct: 306 DDRQVDPL*PVHVDLEDVLQYELP 377
Score = 35.0 bits (70), Expect(4) = 1e-029
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1 / +3
Query: 943 LALVGTELRIDDVASQRRRLA 881
LA + TELRI DVASQ RRLA
Sbjct: 120 LAFIRTELRIHDVASQGRRLA 182
Score = 33.1 bits (66), Expect(4) = 3e-030
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1 / -1
Query: 805 RGRAAVDPRPHREEEDAEEG 864
RGR A+DP HREE+ +EEG
Sbjct: 252 RGRDALDPGLHREEKASEEG 193
Score = 33.1 bits (66), Expect(3) = 3e-052
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -1 / +3
Query: 871 GRALLLHPLPRDVAADPRQXV 809
GR LLL P PRDVA DP V
Sbjct: 186 GRHLLLKPFPRDVAPDPGHHV 248
Score = 30.9 bits (61), Expect(4) = 3e-030
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +1 / -1
Query: 883 QDAFAERLRRRSGAR 927
QDAF ERLRR SGAR
Sbjct: 180 QDAFPERLRRGSGAR 136
Score = 29.5 bits (58), Expect(4) = 1e-029
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -2 / +1
Query: 867 GPFFCILFLAMWPRIHGSXSS 805
G FF LFLAM PRI G SS
Sbjct: 190 GTFF*SLFLAM*PRIQGITSS 252
>gb|BQ468695.1|BQ468695 HM02A04r HM Hordeum vulgare subsp. vulgare cDNA clone HM02A04
5-PRIME, mRNA sequence
Length = 496
Score = 245 bits (529), Expect(2) = 2e-074
Identities = 95/110 (86%), Positives = 101/110 (91%)
Frame = +2 / +1
Query: 539 PYDIPKPFWRYPMQYISFHYWALQGQCQNDMKGLAVDNQDPDQPKIPGDFILKYIFQINV 718
PYDIPK FWRYPMQYISFHYWALQGQCQNDM GL DNQ PDQPKIPG FILKYIFQINV
Sbjct: 1 PYDIPKVFWRYPMQYISFHYWALQGQCQNDMDGLLFDNQYPDQPKIPGQFILKYIFQINV 180
Query: 719 DRSKWIDLSVIFSMIFIYRILFFLMIKINEDXLPWIRGHIARKRMQKKGP 868
RSKWIDLSVIFSMIFIYR+LFF+MIK+NED +PWIRG+IARKR+QKK P
Sbjct: 181 HRSKWIDLSVIFSMIFIYRMLFFIMIKVNEDVMPWIRGYIARKRLQKKVP 330
Score = 149 bits (320), Expect(3) = 2e-047
Identities = 55/69 (79%), Positives = 56/69 (81%)
Frame = -2 / -3
Query: 747 TDRSIHLERSTLIWKMYLRMKSPGILGWSGSWLSTARPFMSFWHWPCSAQ*WKLMYCMGY 568
TDRSIH +R TLIWKMY M PGI GWSG WLS RP MSFWHWPCSAQ*WKLMYCMGY
Sbjct: 209 TDRSIHFDRCTLIWKMYFSMNCPGIFGWSGYWLSNRRPSMSFWHWPCSAQ*WKLMYCMGY 30
Query: 567 LQKGFGMSY 541
LQK GMSY
Sbjct: 29 LQKTLGMSY 3
Score = 60.2 bits (125), Expect(4) = 8e-025
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = -1 / -2
Query: 640 EALHVVLALALQCPVVEADVLHGVSPKGLRDVV 542
E +HV+LALAL CPV+EADVLHG+SP+ L DV+
Sbjct: 102 ETVHVILALAL*CPVMEADVLHGISPENLGDVI 4
Score = 57.0 bits (118), Expect(4) = 1e-024
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +1 / +3
Query: 547 HPEALLEIPHAVHQLPLLGTAGPVPERH 630
HP+ LEI HAVHQLPLLGT GP+PE H
Sbjct: 9 HPQGFLEISHAVHQLPLLGTTGPMPE*H 92
Score = 54.7 bits (113), Expect(2) = 2e-074
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2 / +1
Query: 848 RMQKKGPTPTMGKTPSLRGYVVDPELGSNEG*R 946
R + + P +GKTPSLRGYVVDPELG NEG*+
Sbjct: 304 RKRLQKKVPAIGKTPSLRGYVVDPELGPNEG*K 402
Score = 46.9 bits (96), Expect(4) = 1e-024
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1 / +3
Query: 685 LHPQVHLPDQRGPFQVDRPVGH 750
+H +VHLPDQR P +VDRPVGH
Sbjct: 147 VHTEVHLPDQRAPVKVDRPVGH 212
Score = 45.5 bits (93), Expect(3) = 2e-047
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -2 / -3
Query: 942 *PSLEPSSGSTT*PLSEGVLPIVG 871
*PSL PSSGSTT*PL EGVLP+ G
Sbjct: 398 *PSLGPSSGSTT*PLREGVLPMAG 327
Score = 44.1 bits (90), Expect(4) = 8e-025
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -1 / -2
Query: 751 NDRQVDPLGTVHVDLEDVLEDEVP 680
+DRQVDPL VHVDLEDVL+ E+P
Sbjct: 213 DDRQVDPL*PVHVDLEDVLQYELP 142
Score = 35.0 bits (70), Expect(4) = 8e-025
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1 / -2
Query: 943 LALVGTELRIDDVASQRRRLA 881
LA + TELRI DVASQ RRLA
Sbjct: 399 LAFIRTELRIHDVASQGRRLA 337
Score = 33.1 bits (66), Expect(4) = 1e-024
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1 / +3
Query: 805 RGRAAVDPRPHREEEDAEEG 864
RGR A+DP HREE+ +EEG
Sbjct: 267 RGRDALDPGLHREEKASEEG 326
Score = 33.1 bits (66), Expect(3) = 2e-047
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -1 / -2
Query: 871 GRALLLHPLPRDVAADPRQXV 809
GR LLL P PRDVA DP V
Sbjct: 333 GRHLLLKPFPRDVAPDPGHHV 271
Score = 30.9 bits (61), Expect(4) = 1e-024
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +1 / +3
Query: 883 QDAFAERLRRRSGAR 927
QDAF ERLRR SGAR
Sbjct: 339 QDAFPERLRRGSGAR 383
Score = 29.5 bits (58), Expect(4) = 8e-025
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -2 / -3
Query: 867 GPFFCILFLAMWPRIHGSXSS 805
G FF LFLAM PRI G SS
Sbjct: 329 GTFF*SLFLAM*PRIQGITSS 267
>gb|BG310018.1|BG310018 HVSMEc0016B06f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016B06f, mRNA sequence
Length = 808
Score = 275 bits (596), Expect = 2e-073
Identities = 109/212 (51%), Positives = 148/212 (69%)
Frame = +2 / +3
Query: 92 CIGTIYLDVGTKYTSILARAACSAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVA 271
C+GTIY DVG YT+I ARA+C FV GF+TFMSIGGFPSF+EEMKVF ER NGHYGVA
Sbjct: 48 CLGTIYYDVGNSYTAIQARASCGGFVSGFMTFMSIGGFPSFIEEMKVFSLERQNGHYGVA 227
Query: 272 AFVISNTISATPFLILICFLSGTICYFMVRLHPGFEHYIFFVLNLYASVTVVESLMMAIA 451
A++ISN +S+ PFL+ + + S +I Y+MV+ PGF ++ FF LNLY V+V+ESLMM I+
Sbjct: 228 AYIISNFLSSMPFLLTMSWASASITYWMVKFRPGFSYFAFFALNLYGGVSVIESLMMIIS 407
Query: 452 SVIPNFLMXXXXXXXXXXXFMLVSGYFRLPYDIPKPFWRYPMQYISFHYWALQGQCQNDM 631
+++PNFLM ML SG+FRL ++PK FW+YP+ YI + W L+G +ND+
Sbjct: 408 ALVPNFLMGLILGAGVIGIMMLTSGFFRLLPELPKIFWKYPVSYIVYGSWGLKGAYKNDL 587
Query: 632 KGLAVDNQDPDQPKIPGDFILKYIFQINVDRS 727
GL + P K+ G+FI+ + ++V S
Sbjct: 588 LGLEFEPMTPGGDKLTGEFIITNMMGLSVSYS 683
Score = 120 bits (257), Expect = 1e-026
Identities = 73/222 (32%), Positives = 101/222 (45%)
Frame = -1 / -3
Query: 730 LGTVHVDLEDVLEDEVPXXXXXXXXXXXXREALHVVLALALQCPVVEADVLHGVSPKGLR 551
+G V +DE+ + VVL LQ P +V H V P+ L
Sbjct: 686 IGVADAQPHHVGDDELAGQLVASRRHRLELQPQQVVLVCTLQTPRAVDNVGHWVFPEYLG 507
Query: 550 DVVWKSEVARDQHEYSLNPGPYDDTHEEIWNDTGNRHHQALDHRNAGXXXXXXXXXVLEA 371
K E +R QH + D+ HEE+ + + HH+ALD R+A V E+
Sbjct: 506 KFREKPEESRRQHHDPNDASAKDEAHEEVGHKGRDDHHEALDDRDATIEVKGEEGEVAES 327
Query: 370 RMEAHHEVAYGSRQEAYQNQERRG*DGVADDKRRDTVVPVQPFPLEDLHFFNERRESSNG 191
E +H V G + QER G + V D D VV V P EDLH NE E+++G
Sbjct: 326 WSELNHPVCNGGAGPGHGQQERHGGEEVGYDVGGDAVVAVLPLEGEDLHLLNEGGEAADG 147
Query: 190 HERNEPKDERGAGSPGQDGCVFGADVQVDRADANGDEEVNXE 65
HE +E DE A D V ADV VD A+A+G ++V+ +
Sbjct: 146 HECHEAGDETTARGTRLDCSVAVADVVVDGAEADGHQDVDDD 21
Score = 103 bits (219), Expect = 2e-021
Identities = 60/131 (45%), Positives = 73/131 (55%)
Frame = -2 / -1
Query: 471 RKFGMTLAIAIIKLSTTVTLAYRFKTKKM*CSKPGWRRTMK*HMVPDKKHIRIRNGVAEM 292
RK G + I++LS T T R + KK PG T++ M + + RNG+ E
Sbjct: 427 RKLGTRAEMIIMRLSMTETPP*RLRAKKAK*LNPGRNLTIQYVMEALAQDMVNRNGMEER 248
Query: 291 VLLMTNAATP*CPFSRSRWKTFISSTNEGNPPMDMNVTNPKTNAEQAALARMDVYLVPTS 112
L M AATP* PF RSR KTFISS EG PPMDMNV P+T A A + V L+PTS
Sbjct: 247 KLDMM*AATP*WPFCRSREKTFISSMKEGKPPMDMNVMKPETKPPHEARAWIAV*LLPTS 68
Query: 111 R*IVPMQTVTR 79
*+VP Q R
Sbjct: 67 **MVPRQMAIR 35
>gb|BJ449299.1|BJ449299 BJ449299 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23f10 5', mRNA sequence
Length = 652
Score = 244 bits (528), Expect(2) = 4e-070
Identities = 98/104 (94%), Positives = 102/104 (98%)
Frame = +2 / +2
Query: 92 CIGTIYLDVGTKYTSILARAACSAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVA 271
CIGTIYLDVGTKYTSILARAAC+AFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVA
Sbjct: 341 CIGTIYLDVGTKYTSILARAACAAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVA 520
Query: 272 AFVISNTISATPFLILICFLSGTICYFMVRLHPGFEHYIFFVLN 403
AFVI+NTISA PFL+LICFLSGT+CYFMVRLHPGF HYIFFVLN
Sbjct: 521 AFVIANTISALPFLVLICFLSGTVCYFMVRLHPGFSHYIFFVLN 652
Score = 233 bits (503), Expect(2) = 8e-064
Identities = 101/113 (89%), Positives = 102/113 (90%)
Frame = -2 / -2
Query: 402 FKTKKM*CSKPGWRRTMK*HMVPDKKHIRIRNGVAEMVLLMTNAATP*CPFSRSRWKTFI 223
FKTKKM*C KPG RRTMK*H VPD+KHIR RNG AEMVL MTNAATP*CPFSRSRWKTFI
Sbjct: 651 FKTKKM*CEKPG*RRTMK*HTVPDRKHIRTRNGRAEMVLAMTNAATP*CPFSRSRWKTFI 472
Query: 222 SSTNEGNPPMDMNVTNPKTNAEQAALARMDVYLVPTSR*IVPMQTVTRR*XXS 64
SSTNEGNPPMDM VTNPKTNA AALARMDVYLVPTSR*IVPMQTVTRR* S
Sbjct: 471 SSTNEGNPPMDMKVTNPKTNAAHAALARMDVYLVPTSR*IVPMQTVTRR*IKS 313
Score = 171 bits (367), Expect(2) = 6e-044
Identities = 65/93 (69%), Positives = 74/93 (79%)
Frame = +1 / +1
Query: 124 QIHIHPGQGCLLRVRLWVRYVHVHWRIPFVR*RNEGLPAGTAERALRCRGVCHQQHHLSH 303
QIHIHPGQG + +RLW+R++HVHWRIPF+R RNEGLPAGTAE ALRC +CH QHHL
Sbjct: 373 QIHIHPGQGSMCSIRLWIRHLHVHWRIPFIRGRNEGLPAGTAEWALRCCSICHCQHHLGS 552
Query: 304 AVPDSDMLLVGNHMLLHGAPPSWLRALHLLRLE 402
A+P DML V + MLLHGAP SW LHLLRLE
Sbjct: 553 AIPGPDMLPVRDSMLLHGAPSSWFLTLHLLRLE 651
Score = 167 bits (359), Expect = 1e-040
Identities = 70/104 (67%), Positives = 84/104 (80%)
Frame = -1 / -1
Query: 376 EARMEAHHEVAYGSRQEAYQNQERRG*DGVADDKRRDTVVPVQPFPLEDLHFFNERRESS 197
E RM+AHHEVAY QEAYQ+QE + DGV +DK +TVVP+QPFPLEDLHFF+E RESS
Sbjct: 625 ETRMKAHHEVAYCP*QEAYQDQEWQSRDGVGNDKCCNTVVPIQPFPLEDLHFFHE*RESS 446
Query: 196 NGHERNEPKDERGAGSPGQDGCVFGADVQVDRADANGDEEVNXE 65
NGHE +E KDE PGQDGCVFGA++QVD ADA+GD+E++ E
Sbjct: 445 NGHEGDESKDECCTCCPGQDGCVFGANIQVDCADADGDKEIDQE 314
Score = 106 bits (227), Expect = 2e-022
Identities = 49/87 (56%), Positives = 52/87 (59%)
Frame = +3 / +3
Query: 111 WTSAPNTHPSWPGLPAPRSSLGSLRSCPLEDXXXXXXXXXXXXGNG*TGTTVSRRLSSAT 290
W APNTHPSWPG SSL S SCPLED GNG* GTTV + LS T
Sbjct: 360 WMLAPNTHPSWPGQHVQHSSLDSSPSCPLEDSLHSWKK*RSSSGNG*MGTTVLQHLSLPT 539
Query: 291 PSQPRRS*F*YASCREPYATSWCASIL 371
PS+ S *YASC+ YATSWCA IL
Sbjct: 540 PSRLCHSWS*YASCQGQYATSWCAFIL 620
Score = 86.8 bits (183), Expect(2) = 3e-021
Identities = 42/60 (70%), Positives = 43/60 (71%)
Frame = -3 / -3
Query: 371 QDGGAP*SSIWFPTRSISESGTAWLRWCC**QTPRHRSARSAVPAGRPSFLQRTKGILQW 192
QD GAP*SSI T SIS G A RWC *Q +HRSA SAVPAGRPSFL R KGILQW
Sbjct: 620 QDEGAP*SSILSLTGSISGPGMAEPRWCWQ*QMLQHRSAHSAVPAGRPSFLPRMKGILQW 441
Score = 40.9 bits (83), Expect(2) = 4e-070
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1 / +2
Query: 1 ACTLTXRSFINMSRDFG 51
ACTLT RSFINMSRDFG
Sbjct: 248 ACTLTRRSFINMSRDFG 298
Score = 35.4 bits (71), Expect(2) = 3e-021
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / -3
Query: 149 PWPGWMCIW 123
PWPGWMCIW
Sbjct: 398 PWPGWMCIW 372
Score = 31.3 bits (62), Expect(2) = 8e-064
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -3 / -2
Query: 50 PKSRDMLMKERLVRV 6
PKSRDMLM ERLV V
Sbjct: 297 PKSRDMLMNERLVSV 253
Score = 27.2 bits (53), Expect(2) = 6e-044
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / +1
Query: 15 QXLLHQHVAGLW 50
Q L+HQHVA LW
Sbjct: 262 QTLIHQHVARLW 297
>gb|BJ452141.1|BJ452141 BJ452141 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37o18 5', mRNA sequence
Length = 661
Score = 203 bits (438), Expect(2) = 9e-058
Identities = 82/87 (94%), Positives = 86/87 (98%)
Frame = +2 / +2
Query: 92 CIGTIYLDVGTKYTSILARAACSAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVA 271
CIGTIYLDVGTKYTSILARAAC+AFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVA
Sbjct: 401 CIGTIYLDVGTKYTSILARAACAAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVA 580
Query: 272 AFVISNTISATPFLILICFLSGTICYF 352
AFVI+NTISA PFL+LICFLSGT+CYF
Sbjct: 581 AFVIANTISALPFLVLICFLSGTVCYF 661
Score = 199 bits (428), Expect(2) = 2e-053
Identities = 86/96 (89%), Positives = 87/96 (90%)
Frame = -2 / -2
Query: 351 K*HMVPDKKHIRIRNGVAEMVLLMTNAATP*CPFSRSRWKTFISSTNEGNPPMDMNVTNP 172
K*H VPD+KHIR RNG AEMVL MTNAATP*CPFSRSRWKTFISSTNEGNPPMDM VTNP
Sbjct: 660 K*HTVPDRKHIRTRNGRAEMVLAMTNAATP*CPFSRSRWKTFISSTNEGNPPMDMKVTNP 481
Query: 171 KTNAEQAALARMDVYLVPTSR*IVPMQTVTRR*XXS 64
KTNA AALARMDVYLVPTSR*IVPMQTVTRR* S
Sbjct: 480 KTNAAHAALARMDVYLVPTSR*IVPMQTVTRR*IKS 373
Score = 150 bits (323), Expect = 9e-036
Identities = 64/96 (66%), Positives = 77/96 (80%)
Frame = -1 / -1
Query: 352 EVAYGSRQEAYQNQERRG*DGVADDKRRDTVVPVQPFPLEDLHFFNERRESSNGHERNEP 173
EVAY QEAYQ+QE + DGV +DK +TVVP+QPFPLEDLHFF+E RESSNGHE +E
Sbjct: 661 EVAYCP*QEAYQDQEWQSRDGVGNDKCCNTVVPIQPFPLEDLHFFHE*RESSNGHEGDES 482
Query: 172 KDERGAGSPGQDGCVFGADVQVDRADANGDEEVNXE 65
KDE PGQDGCVFGA++QVD ADA+GD+E++ E
Sbjct: 481 KDECCTCCPGQDGCVFGANIQVDCADADGDKEIDQE 374
Score = 138 bits (296), Expect(2) = 3e-034
Identities = 52/76 (68%), Positives = 61/76 (80%)
Frame = +1 / +1
Query: 124 QIHIHPGQGCLLRVRLWVRYVHVHWRIPFVR*RNEGLPAGTAERALRCRGVCHQQHHLSH 303
QIHIHPGQG + +RLW+R++HVHWRIPF+R RNEGLPAGTAE ALRC +CH QHHL
Sbjct: 433 QIHIHPGQGSMCSIRLWIRHLHVHWRIPFIRGRNEGLPAGTAEWALRCCSICHCQHHLGS 612
Query: 304 AVPDSDMLLVGNHMLL 351
A+P DML V + MLL
Sbjct: 613 AIPGPDMLPVRDSMLL 660
Score = 40.9 bits (83), Expect(2) = 9e-058
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1 / +2
Query: 1 ACTLTXRSFINMSRDFG 51
ACTLT RSFINMSRDFG
Sbjct: 308 ACTLTRRSFINMSRDFG 358
Score = 31.3 bits (62), Expect(2) = 2e-053
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -3 / -2
Query: 50 PKSRDMLMKERLVRV 6
PKSRDMLM ERLV V
Sbjct: 357 PKSRDMLMNERLVSV 313
Score = 27.2 bits (53), Expect(2) = 3e-034
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / +1
Query: 15 QXLLHQHVAGLW 50
Q L+HQHVA LW
Sbjct: 322 QTLIHQHVARLW 357
>gb|BE216587.2|BE216587 HV_CEb0010O06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010O06f, mRNA sequence
Length = 770
Score = 183 bits (394), Expect(2) = 1e-048
Identities = 78/97 (80%), Positives = 82/97 (84%)
Frame = +2 / +2
Query: 185 FMSIGGFPSFVEEMKVFQRERLNGHYGVAAFVISNTISATPFLILICFLSGTICYFMVRL 364
F+ I G PSF E+M VFQ ERLNG Y VAA VI+NTIS PFL LICFLSGT+CYFMVRL
Sbjct: 107 FIPIAGLPSFAEQMNVFQWERLNGPYSVAAIVIANTISDLPFLDLICFLSGTVCYFMVRL 286
Query: 365 HPGFEHYIFFVLNLYASVTVVESLMMAIASVIPNFLM 475
HPGF HYI FVLNLYASVTVVESLMMAIAS IPNFLM
Sbjct: 287 HPGFSHYILFVLNLYASVTVVESLMMAIASGIPNFLM 397
Score = 165 bits (354), Expect = 5e-040
Identities = 73/99 (73%), Positives = 80/99 (80%)
Frame = -2 / -3
Query: 471 RKFGMTLAIAIIKLSTTVTLAYRFKTKKM*CSKPGWRRTMK*HMVPDKKHIRIRNGVAEM 292
RK GM LA+AIIKLSTTVTLAYRFKT KM*C KPG RRTMK*H VPD+KHIR RNG +EM
Sbjct: 393 RKLGMPLAMAIIKLSTTVTLAYRFKTNKM*CEKPG*RRTMK*HTVPDRKHIRSRNGRSEM 214
Query: 291 VLLMTNAATP*CPFSRSRWKTFISSTNEGNPPMDMNVTN 175
VL MT AAT * PFSRS WKTFI S EG+P M M +++
Sbjct: 213 VLAMTIAATL*GPFSRSHWKTFICSAKEGSPAMGMKISD 97
Score = 163 bits (350), Expect(2) = 2e-041
Identities = 64/107 (59%), Positives = 77/107 (71%)
Frame = +1 / +1
Query: 184 VHVHWRIPFVR*RNEGLPAGTAERALRCRGVCHQQHHLSHAVPDSDMLLVGNHMLLHGAP 363
+H H R PF+R NE LP G AE AL+CR CH QHHL A+P DML V + MLLHGAP
Sbjct: 106 LHTHRRTPFLRGTNERLPVGAAEWALQCRSNCHCQHHLGSAIPGPDMLPVRDSMLLHGAP 285
Query: 364 PSWLRALHLLRLEPVRQRYGGRELDDGDCQCHSKFPHGYHHRGRDSG 504
SW LHL+RLEP+RQ + G ELDDG C+ H++FPHG+HHR +SG
Sbjct: 286 SSWFLTLHLIRLEPIRQCHRG*ELDDGHCKWHTQFPHGHHHRS*NSG 426
Score = 89.5 bits (189), Expect(2) = 4e-025
Identities = 39/64 (60%), Positives = 46/64 (71%)
Frame = -1 / -2
Query: 376 EARMEAHHEVAYGSRQEAYQNQERRG*DGVADDKRRDTVVPVQPFPLEDLHFFNERRESS 197
E RM+AHHEVAY QEAYQ QE + DGV +D DTV P+QP PLED+H F E RES
Sbjct: 298 ETRMKAHHEVAYCP*QEAYQVQEWQIRDGVGNDNCCDTVGPIQPLPLEDVHLFREGRESC 119
Query: 196 NGHE 185
+G+E
Sbjct: 118 DGYE 107
Score = 45.5 bits (93), Expect(2) = 4e-025
Identities = 19/32 (59%), Positives = 21/32 (65%)
Frame = -1 / -2
Query: 505 SLNPGPYDDTHEEIWNDTGNRHHQALDHRNAG 410
SLN YDD HEEI T N HHQAL+H + G
Sbjct: 427 SLNFSSYDDAHEEIGYATCNGHHQALNHGDTG 332
Score = 30.9 bits (61), Expect(2) = 1e-048
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / +2
Query: 502 GNIHAGLWLLQTS 540
GNIHA LW+LQTS
Sbjct: 425 GNIHAWLWILQTS 463
Score = 26.7 bits (52), Expect(2) = 2e-041
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2 / +3
Query: 509 FMLVSGYFRLPYDIPKPF 562
FML SGYF+LP P+ F
Sbjct: 432 FMLGSGYFKLPV*HPQGF 485
>gb|BQ660965.1|BQ660965 HM01E18w HM Hordeum vulgare subsp. vulgare cDNA clone HM01E18
3-PRIME, mRNA sequence
Length = 374
Score = 130 bits (278), Expect(2) = 6e-040
Identities = 52/63 (82%), Positives = 58/63 (92%)
Frame = +2 / -1
Query: 680 GDFILKYIFQINVDRSKWIDLSVIFSMIFIYRILFFLMIKINEDXLPWIRGHIARKRMQK 859
G FILKYIFQINV RSKWIDLSVIFSMIFIYR+LFF+MIK+ ED +PWIRG+IARKR+QK
Sbjct: 374 GQFILKYIFQINVHRSKWIDLSVIFSMIFIYRMLFFIMIKVXEDVMPWIRGYIARKRLQK 195
Query: 860 KGP 868
K P
Sbjct: 194 KVP 186
Score = 54.7 bits (113), Expect(2) = 6e-040
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2 / -1
Query: 848 RMQKKGPTPTMGKTPSLRGYVVDPELGSNEG*R 946
R + + P +GKTPSLRGYVVDPELG NEG*+
Sbjct: 212 RKRLQKKVPAIGKTPSLRGYVVDPELGPNEG*K 114
>gb|BI777732.2|BI777732 EBro08_SQ001_L03_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ001_L03 5', mRNA sequence
Length = 447
Score = 138 bits (297), Expect(2) = 2e-034
Identities = 53/89 (59%), Positives = 71/89 (79%)
Frame = +2 / +1
Query: 92 CIGTIYLDVGTKYTSILARAACSAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVA 271
C GTI+ D+G Y SI AR + FV F+TFM+IGGFPSFVE+MK+F RERLNGHYGV+
Sbjct: 178 CCGTIFYDIGQNYGSIQARGSMLMFVGAFLTFMAIGGFPSFVEDMKIFGRERLNGHYGVS 357
Query: 272 AFVISNTISATPFLILICFLSGTICYFMV 358
+FVI+NT+S+TP+L+LI + G + Y++V
Sbjct: 358 SFVIANTVSSTPYLLLISLVPGAMAYYLV 444
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / +1
Query: 10 LTXRSFINMSRDFG 51
LT RSFINM RD G
Sbjct: 94 LTKRSFINMYRDLG 135
>gb|CB879914.1|CB879914 HP10M02T HP Hordeum vulgare subsp. vulgare cDNA clone HP10M02
5-PRIME, mRNA sequence
Length = 324
Score = 99.6 bits (211), Expect(2) = 8e-031
Identities = 38/46 (82%), Positives = 44/46 (95%)
Frame = +2 / +2
Query: 731 WIDLSVIFSMIFIYRILFFLMIKINEDXLPWIRGHIARKRMQKKGP 868
WIDLSVIFSMIFIYR+LFF+MIK+NED +PWIRG+IARKR+QKK P
Sbjct: 11 WIDLSVIFSMIFIYRMLFFIMIKVNEDVMPWIRGYIARKRLQKKVP 148
Score = 54.7 bits (113), Expect(2) = 8e-031
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2 / +2
Query: 848 RMQKKGPTPTMGKTPSLRGYVVDPELGSNEG*R 946
R + + P +GKTPSLRGYVVDPELG NEG*+
Sbjct: 122 RKRLQKKVPAIGKTPSLRGYVVDPELGPNEG*K 220
>gb|BQ465136.1|BQ465136 HU02M04r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M04
5-PRIME, mRNA sequence
Length = 651
Score = 103 bits (219), Expect(2) = 6e-025
Identities = 45/50 (90%), Positives = 45/50 (90%)
Frame = -2 / -1
Query: 213 NEGNPPMDMNVTNPKTNAEQAALARMDVYLVPTSR*IVPMQTVTRR*XXS 64
NEGNPPMDM VTNPKTNA AALARMDVYLVPTSR*IVPMQTVTRR* S
Sbjct: 651 NEGNPPMDMKVTNPKTNAAHAALARMDVYLVPTSR*IVPMQTVTRR*IKS 502
Score = 96.8 bits (205), Expect(2) = 6e-026
Identities = 39/40 (97%), Positives = 40/40 (100%)
Frame = +2 / +2
Query: 92 CIGTIYLDVGTKYTSILARAACSAFVFGFVTFMSIGGFPS 211
CIGTIYLDVGTKYTSILARAAC+AFVFGFVTFMSIGGFPS
Sbjct: 530 CIGTIYLDVGTKYTSILARAACAAFVFGFVTFMSIGGFPS 649
Score = 40.9 bits (83), Expect(2) = 6e-026
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1 / +2
Query: 1 ACTLTXRSFINMSRDFG 51
ACTLT RSFINMSRDFG
Sbjct: 437 ACTLTRRSFINMSRDFG 487
Score = 31.3 bits (62), Expect(2) = 6e-025
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -3 / -1
Query: 50 PKSRDMLMKERLVRV 6
PKSRDMLM ERLV V
Sbjct: 486 PKSRDMLMNERLVSV 442
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 482,049,454
Number of Sequences: 312970
Number of extensions: 7814938
Number of successful extensions: 69066
Number of sequences better than 1.0e-020: 18
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 12210084310
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)