TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802544.2.1
(814 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG366389.2|BG366389 HVSMEi0006O04f Hordeum vulgare 20 DA... 381 e-115
gb|CA025221.1|CA025221 HZ51I21r HZ Hordeum vulgare subsp. v... 384 e-106
gb|BF627283.3|BF627283 HVSMEb0004H03f Hordeum vulgare seedl... 278 2e-074
gb|BM817239.1|BM817239 HC05A08_T3.ab1 HC Hordeum vulgare su... 191 3e-054
gb|BF261083.2|BF261083 HVSMEf0023L11f Hordeum vulgare seedl... 171 2e-046
gb|BM442407.2|BM442407 EBan01_SQ003_B16_R anther, yellow st... 169 1e-045
gb|BU987748.1|BU987748 HF15K13r HF Hordeum vulgare subsp. v... 147 7e-039
gb|CA022392.1|CA022392 HZ42P20r HZ Hordeum vulgare subsp. v... 150 7e-036
gb|CB884147.1|CB884147 HZ65J24r HZ Hordeum vulgare subsp. v... 126 7e-035
gb|CA022456.1|CA022456 HZ43D23r HZ Hordeum vulgare subsp. v... 125 3e-028
gb|BI960217.1|BI960217 HVSMEn0023M07f Hordeum vulgare rachi... 102 1e-027
gb|BF628668.2|BF628668 HVSMEb0006P17f Hordeum vulgare seedl... 70 4e-027
gb|AJ461820.1|AJ461820 AJ461820 S00002 Hordeum vulgare subs... 121 5e-027
gb|BQ765117.1|BQ765117 EBca01_SQ005_H22_R carpel, pre-anthe... 99 1e-026
tpe|BN000696.1| TPA: Hordeum vulgare subsp. vulgare mRNA fo... 78 7e-024
gb|CB882784.1|CB882784 HL02N10w HL Hordeum vulgare subsp. v... 94 3e-023
gb|BI958500.1|BI958500 HVSMEn0015F10f Hordeum vulgare rachi... 86 6e-023
gb|BI957720.1|BI957720 HVSMEn0010N21f Hordeum vulgare rachi... 85 2e-022
gb|BI959197.1|BI959197 HVSMEn0018J22f Hordeum vulgare rachi... 85 2e-022
gb|BI960086.1|BI960086 HVSMEn0023C12f Hordeum vulgare rachi... 79 7e-021
>gb|BG366389.2|BG366389 HVSMEi0006O04f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0006O04f, mRNA sequence
Length = 940
Score = 381 bits (827), Expect(2) = e-115
Identities = 146/184 (79%), Positives = 167/184 (90%)
Frame = -1 / +1
Query: 727 FIPSEFGMDPSKMGHALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQM 548
F+PSEFGMDP++MGHALEPGR+TFDEKM++RRAIE+ NIPHTY+SANCFAAYF PNLCQM
Sbjct: 7 FLPSEFGMDPARMGHALEPGRITFDEKMEIRRAIEERNIPHTYISANCFAAYFAPNLCQM 186
Query: 547 RTLLPPKEKVHVYGDGNVKAIFCDEDDVATYTIKSVDDPRALNKTLYIRPPENILTQNDV 368
TLLPPKEKVHVYGDGNVKA+F DEDD+A YTIK +DDP ALNKT+Y+RP ENIL+QN++
Sbjct: 187 GTLLPPKEKVHVYGDGNVKAVFMDEDDIAAYTIKCIDDPLALNKTIYLRPQENILSQNEL 366
Query: 367 ISKWEKLSGNVLEKIHIPADEFLASMKGTDLANQAGVGHYYHIFYEGCLTNFEIGDDGAD 188
I+KWEK+SG VLEKI IP+DEFLASMKGTDLANQ G+GHYYHIFYEGCLTN EIG DG +
Sbjct: 367 IAKWEKVSGKVLEKIPIPSDEFLASMKGTDLANQVGIGHYYHIFYEGCLTNXEIGHDGEE 546
Query: 187 ATLL 176
L
Sbjct: 547 EASL 558
Score = 286 bits (619), Expect(2) = 6e-081
Identities = 137/181 (75%), Positives = 146/181 (80%)
Frame = +3 / -3
Query: 186 ASAPSSPISKFVKQPS*KMW**CPTPA*LAKSVPFIEAKNSSAGMWIFSRTFPESFSHFE 365
+S+PS PIS FVKQPS*KM **CP P *LA+SVPFI+AKNSS GM IFSRTFPE+FSH
Sbjct: 548 SSSPSCPISXFVKQPS*KM***CPIPT*LARSVPFIDAKNSSLGMGIFSRTFPETFSHLA 369
Query: 366 ITSF*VKMFSGGLMYSVLFNARGSSTDLIVYVATSSSSQNIALTLPSPYT*TFSLGGKRV 545
I SF*++MFS G Y VLF A GSS LIVY A SSSS N ALTLPSP T*TFSLGG+RV
Sbjct: 368 INSF*LRMFSCGRRYIVLFKASGSSMHLIVYAAMSSSSMNTALTLPSP*T*TFSLGGRRV 189
Query: 546 RI*HRFGQK*AAKQLAET*V*GMLASSIARLRSIFSSNVTLPGSRACPILDGSMPNSDGI 725
I*H+ G K*AAKQLAE *V GM SSIA L SIFSSNV LPGSRACPIL GSMPNSDG
Sbjct: 188 PI*HKLGAK*AAKQLAEM*VWGMFLSSIALLISIFSSNVILPGSRACPILAGSMPNSDGR 9
Query: 726 K 728
K
Sbjct: 8 K 6
Score = 251 bits (543), Expect(2) = 1e-069
Identities = 100/178 (56%), Positives = 131/178 (73%)
Frame = +2 / -2
Query: 197 IVADFKICQATFIENVVIVSHSGLIGQVSTFH*SQEFICRNVDFLQNVSGKLFPLRDNIV 376
I++D +CQAT IENV+++ + LI +V TFH* QEFI RN +FL+N+S LFP + ++
Sbjct: 537 IMSDLXVCQATLIENVIVMPYPHLISKVCTFH*RQEFITRNGNFLKNLSRDLFPFSNQLI 358
Query: 377 LSQDVFWWSYV*CLVQCARIINRLDCIRCNIVFITEYSFDIAVSIYMNFFFGRQKGAHLT 556
L++DVF W V CLVQ IIN LDC+RCN++F+ EY FD+A+SI +NF G +KG HLT
Sbjct: 357 LTKDVFLWP*VYCLVQGQWIINALDCVRCNVIFVHEYRFDVAISINVNFLLGWKKGTHLT 178
Query: 557 *VWAKVSSKAIGRNIGVRNVGIFYCTP*VHLFIKCNPSWFKSMPHLGWIHAEFRWYKT 730
V +KVSSKA+ RN+GV NV FY +HL IKC+PSWFK M H W+HAEFRW +T
Sbjct: 177 QVRSKVSSKAVSRNVGVGNVSFFYRPSYLHLLIKCDPSWFKGMSHPCWVHAEFRW*ET 4
Score = 175 bits (376), Expect(2) = 2e-047
Identities = 93/178 (52%), Positives = 106/178 (59%)
Frame = -2 / +2
Query: 729 VLYHRNSAWIHPRWGMLLNQEGLHLMKRWT*GVQ*KMPTFLTPMFLPIALLLTFAQTYVR 550
V YH NSAW W M LNQEG HLM+RW * +*K TF TP FL ALLLT T V+
Sbjct: 5 VSYHLNSAWTQQGWDMPLNQEGSHLMRRWR*EGR*KKETFPTPTFLLTALLLTLLLTCVK 184
Query: 549 CAPFCRPKKKFMYMETAMSKLYSVMKTMLQRIQSSLLMILAH*TRHYT*DHQKTS*LKTM 370
PF P++KF +ME A SK YS K LQR QSS LMI *TR YT H+KTS ++
Sbjct: 185 WVPFFHPRRKFTFMEMATSKRYSWTKMTLQRTQSSALMIHWP*TRQYTYGHRKTSLVRMS 364
Query: 369 LSRSGKSFPETFWRKSTFLQMNSWLQ*KVLTWPIKPEWDTITTFSMKVA*QILKSATM 196
+GK E F RK F MNSW Q*KV T I+ TFSM+VA*Q +S M
Sbjct: 365 *LLNGKRSRERFLRKFPFRVMNSWRQ*KVQTLLIRWG*GITITFSMRVA*QTXRSDMM 538
Score = 97.3 bits (206), Expect(3) = 6e-035
Identities = 60/124 (48%), Positives = 73/124 (58%)
Frame = -3 / +3
Query: 557 MSDAHPFAAQRKSSCIWRRQCQSYIL**RRCCNVYNQVC**SSRIEQDTIHKTTRKHLDS 378
+S+ +P + Q +SS +WR Q QS I R C+V+NQV **S+ +EQD I T KH S
Sbjct: 177 VSNGYPSSTQGESSRLWRWQRQSGIHGRR*HCSVHNQVH**STGLEQDNIPTATGKHP*S 356
Query: 377 KRCYLEVGKAFRKRSGENPHSCR*ILGFNERY*LGQSSRSGTLLPHFL*RLLDKF*NRRR 198
+ +GK K S EN HS *ILG NERY S LL HFL* LLDK *+R
Sbjct: 357 E*VDC*MGKGLGKGS*ENSHSE**ILGVNERYRPC*SGGDRALLSHFL*GLLDKL*DRT* 536
Query: 197 WSRR 186
W RR
Sbjct: 537 WGRR 548
Score = 81.7 bits (172), Expect(4) = 1e-034
Identities = 39/71 (54%), Positives = 44/71 (61%)
Frame = +1 / -1
Query: 517 ELFLWAAKGCASDIGLGKSKQQSNWQKHRCEECWHLLLHALGPSFHQM*PFLVQEHAPSW 696
EL W +G D +SKQQS+ QK RC EC+ LL L PS HQM* FLVQ H PS
Sbjct: 217 ELSPWVEEGYPFDTS*EQSKQQSS*QKCRCGECFFLLSPFLSPSSHQM*SFLVQGHVPSL 38
Query: 697 MDPCRIPMV*N 729
+ PCRI MV N
Sbjct: 37 LGPCRIQMVGN 5
Score = 54.7 bits (113), Expect(3) = 6e-035
Identities = 25/42 (59%), Positives = 30/42 (71%)
Frame = -3 / +3
Query: 728 FYTIGIRHGSIQDGACS*TRKGYI**KDGPKACNRRCQHSSH 603
F TI IRHG +DG C *TRK +I**+DG K +RR +HS H
Sbjct: 6 FPTI*IRHGPSKDGTCP*TRKDHI**EDGDKKGDRRKKHSPH 131
Score = 53.8 bits (111), Expect(4) = 1e-034
Identities = 27/56 (48%), Positives = 31/56 (55%)
Frame = +1 / -1
Query: 190 LLHRRRFQNLSSNLHRKCGNSVPLRLDWPSQYLSLKPRIHLQECGFSPERFRKAFP 357
L H R +LSSN HRKC ++ D YLSL PRIH E FS E F + FP
Sbjct: 544 LPHHVRSXSLSSNPHRKCDSNALSPPD*QGLYLSLTPRIHHSEWEFSQEPFPRPFP 377
Score = 52.8 bits (109), Expect(2) = e-115
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -1 / +1
Query: 202 DDGADATLLYPEVQYTRMDEYMKRYV* 122
D +A+LLYPEVQYTRMDEYMKRY+*
Sbjct: 535 DGEEEASLLYPEVQYTRMDEYMKRYL* 615
Score = 35.0 bits (70), Expect(2) = 6e-081
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2 / -2
Query: 113 NLALHIPLHVLIHAGILNLWVQ 178
+L L I HVL+H G+LNLWV+
Sbjct: 624 SL*L*IAFHVLVHPGVLNLWVE 559
Score = 34.5 bits (69), Expect(4) = 1e-034
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +1 / -1
Query: 388 CFLVVLCIVSCSMREDHQQT*LYTLQ 465
CF V + I+SCS DHQ T*L TLQ
Sbjct: 346 CFPVAVGILSCSRPVDHQCT*LCTLQ 269
Score = 34.5 bits (69), Expect(2) = 2e-047
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -2 / +2
Query: 195 EQTLLCCTQRFSIPAWMST*RGMCNAKL 112
++ LL TQRFS P W ST* + N KL
Sbjct: 542 KKRLLYSTQRFSTPGWTST*NAIYNYKL 625
Score = 33.6 bits (67), Expect(3) = 6e-035
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3 / +3
Query: 191 RRYSVVPRGSVYPHG*VHEEVCVTLN 114
R +S +PRGSV+ G VHE + +T N
Sbjct: 546 RGFSTLPRGSVHQDGRVHETLFITTN 623
Score = 32.2 bits (64), Expect(2) = 1e-069
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1 / -1
Query: 109 VQFSVTHTSSCTHPCGYTEPLGTTE*RLL 195
++F V ++ SCT P TEPLG E LL
Sbjct: 628 IKFVVINSVSCTRPSWCTEPLGRVEKPLL 542
Score = 31.8 bits (63), Expect(4) = 1e-034
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +3 / -3
Query: 135 FMYSSMRVY*TSGYNRVASAPSS 203
FMYSS+ VY*TSG +R AS+ S
Sbjct: 602 FMYSSILVY*TSG*SREASSSPS 534
>gb|CA025221.1|CA025221 HZ51I21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51I21
5-PRIME, mRNA sequence
Length = 578
Score = 384 bits (832), Expect = e-106
Identities = 146/178 (82%), Positives = 166/178 (93%)
Frame = -1 / +2
Query: 727 FIPSEFGMDPSKMGHALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQM 548
F+PSEFGMDP++MGHALEPGR+TFDEKM++RRAIE+ NIPHTY+SANCFAAYF PNLCQM
Sbjct: 44 FLPSEFGMDPARMGHALEPGRITFDEKMEIRRAIEERNIPHTYISANCFAAYFAPNLCQM 223
Query: 547 RTLLPPKEKVHVYGDGNVKAIFCDEDDVATYTIKSVDDPRALNKTLYIRPPENILTQNDV 368
TLLPPKEKVHVYGDGNVKA+F DEDD+A YTIK +DDP ALNKT+Y+RP ENIL+QN++
Sbjct: 224 GTLLPPKEKVHVYGDGNVKAVFMDEDDIAAYTIKCIDDPLALNKTIYLRPQENILSQNEL 403
Query: 367 ISKWEKLSGNVLEKIHIPADEFLASMKGTDLANQAGVGHYYHIFYEGCLTNFEIGDDG 194
I+KWEK+SG VLEKI IP+DEFLASMKGTDLANQ G+GHYYHIFYEGCLTNFEIG DG
Sbjct: 404 IAKWEKVSGKVLEKIPIPSDEFLASMKGTDLANQVGIGHYYHIFYEGCLTNFEIGHDG 577
Score = 286 bits (619), Expect = 1e-076
Identities = 137/178 (76%), Positives = 144/178 (80%)
Frame = +3 / -3
Query: 195 PSSPISKFVKQPS*KMW**CPTPA*LAKSVPFIEAKNSSAGMWIFSRTFPESFSHFEITS 374
PS PISKFVKQPS*KM **CP P *LA+SVPFI+AKNSS GM IFSRTFPE+FSH I S
Sbjct: 576 PSCPISKFVKQPS*KM***CPIPT*LARSVPFIDAKNSSLGMGIFSRTFPETFSHLAINS 397
Query: 375 F*VKMFSGGLMYSVLFNARGSSTDLIVYVATSSSSQNIALTLPSPYT*TFSLGGKRVRI* 554
F*++MFS G Y VLF A GSS LIVY A SSSS N ALTLPSP T*TFSLGG+RV I*
Sbjct: 396 F*LRMFSCGRRYIVLFKASGSSMHLIVYAAMSSSSMNTALTLPSP*T*TFSLGGRRVPI* 217
Query: 555 HRFGQK*AAKQLAET*V*GMLASSIARLRSIFSSNVTLPGSRACPILDGSMPNSDGIK 728
H+ G K*AAKQLAE *V GM SSIA L SIFSSNV LPGSRACPIL GSMPNSDG K
Sbjct: 216 HKLGAK*AAKQLAEM*VWGMFLSSIALLISIFSSNVILPGSRACPILAGSMPNSDGRK 43
Score = 253 bits (548), Expect = 6e-067
Identities = 101/178 (56%), Positives = 132/178 (74%)
Frame = +2 / -2
Query: 197 IVADFKICQATFIENVVIVSHSGLIGQVSTFH*SQEFICRNVDFLQNVSGKLFPLRDNIV 376
I++D K+CQAT IENV+++ + LI +V TFH* QEFI RN +FL+N+S LFP + ++
Sbjct: 574 IMSDLKVCQATLIENVIVMPYPHLISKVCTFH*RQEFITRNGNFLKNLSRDLFPFSNQLI 395
Query: 377 LSQDVFWWSYV*CLVQCARIINRLDCIRCNIVFITEYSFDIAVSIYMNFFFGRQKGAHLT 556
L++DVF W V CLVQ IIN LDC+RCN++F+ EY FD+A+SI +NF G +KG HLT
Sbjct: 394 LTKDVFLWP*VYCLVQGQWIINALDCVRCNVIFVHEYRFDVAISIDVNFLLGWKKGTHLT 215
Query: 557 *VWAKVSSKAIGRNIGVRNVGIFYCTP*VHLFIKCNPSWFKSMPHLGWIHAEFRWYKT 730
V +KVSSKA+ RN+GV NV FY +HL IKC+PSWFK M H W+HAEFRW +T
Sbjct: 214 QVRSKVSSKAVSRNVGVGNVSFFYRPSYLHLLIKCDPSWFKGMSHPCWVHAEFRW*ET 41
Score = 175 bits (376), Expect = 3e-043
Identities = 94/178 (52%), Positives = 106/178 (59%)
Frame = -2 / +3
Query: 729 VLYHRNSAWIHPRWGMLLNQEGLHLMKRWT*GVQ*KMPTFLTPMFLPIALLLTFAQTYVR 550
V YH NSAW W M LNQEG HLM+RW * +*K TF TP FL ALLLT T V+
Sbjct: 42 VSYHLNSAWTQQGWDMPLNQEGSHLMRRWR*EGR*KKETFPTPTFLLTALLLTLLLTCVK 221
Query: 549 CAPFCRPKKKFMYMETAMSKLYSVMKTMLQRIQSSLLMILAH*TRHYT*DHQKTS*LKTM 370
PF P++KF ME A SK YS K LQR QSS LMI *TR YT H+KTS ++
Sbjct: 222 WVPFFHPRRKFTSMEMATSKRYSWTKMTLQRTQSSALMIHWP*TRQYTYGHRKTSLVRMS 401
Query: 369 LSRSGKSFPETFWRKSTFLQMNSWLQ*KVLTWPIKPEWDTITTFSMKVA*QILKSATM 196
+GK E F RK F MNSW Q*KV T I+ TFSM+VA*Q L+S M
Sbjct: 402 *LLNGKRSRERFLRKFPFRVMNSWRQ*KVQTLLIRWG*GITITFSMRVA*QTLRSDMM 575
Score = 92.7 bits (196), Expect(2) = 7e-029
Identities = 58/121 (47%), Positives = 71/121 (58%)
Frame = -3 / +1
Query: 557 MSDAHPFAAQRKSSCIWRRQCQSYIL**RRCCNVYNQVC**SSRIEQDTIHKTTRKHLDS 378
+S+ +P + Q +SS +WR Q QS I R C+V+NQV **S+ +EQD I T KH S
Sbjct: 214 VSNGYPSSTQGESSRLWRWQRQSGIHGRR*HCSVHNQVH**STGLEQDNIPTATGKHP*S 393
Query: 377 KRCYLEVGKAFRKRSGENPHSCR*ILGFNERY*LGQSSRSGTLLPHFL*RLLDKF*NRRR 198
+ +GK K S EN HS *ILG NERY S LL HFL* LLDK *+R
Sbjct: 394 E*VDC*MGKGLGKGS*ENSHSE**ILGVNERYRPC*SGGDRALLSHFL*GLLDKL*DRT* 573
Query: 197 W 195
W
Sbjct: 574 W 576
Score = 84.9 bits (179), Expect(3) = 6e-032
Identities = 40/74 (54%), Positives = 45/74 (60%)
Frame = +1 / -1
Query: 517 ELFLWAAKGCASDIGLGKSKQQSNWQKHRCEECWHLLLHALGPSFHQM*PFLVQEHAPSW 696
EL W +G D +SKQQS+ QK RC EC+ LL L PS HQM* FLVQ H PS
Sbjct: 254 ELSPWVEEGYPFDTS*EQSKQQSS*QKCRCGECFFLLSPFLSPSSHQM*SFLVQGHVPSL 75
Query: 697 MDPCRIPMV*NXXC 738
+ PCRI MV N C
Sbjct: 74 LGPCRIQMVGNEQC 33
Score = 56.1 bits (116), Expect(3) = 6e-032
Identities = 27/54 (50%), Positives = 31/54 (57%)
Frame = +1 / -1
Query: 196 HRRRFQNLSSNLHRKCGNSVPLRLDWPSQYLSLKPRIHLQECGFSPERFRKAFP 357
H R Q+LSSN HRKC ++ D YLSL PRIH E FS E F + FP
Sbjct: 575 HHVRSQSLSSNPHRKCDSNALSPPD*QGLYLSLTPRIHHSEWEFSQEPFPRPFP 414
Score = 54.7 bits (113), Expect(2) = 7e-029
Identities = 25/42 (59%), Positives = 30/42 (71%)
Frame = -3 / +1
Query: 728 FYTIGIRHGSIQDGACS*TRKGYI**KDGPKACNRRCQHSSH 603
F TI IRHG +DG C *TRK +I**+DG K +RR +HS H
Sbjct: 43 FPTI*IRHGPSKDGTCP*TRKDHI**EDGDKKGDRRKKHSPH 168
Score = 34.5 bits (69), Expect(3) = 6e-032
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +1 / -1
Query: 388 CFLVVLCIVSCSMREDHQQT*LYTLQ 465
CF V + I+SCS DHQ T*L TLQ
Sbjct: 383 CFPVAVGILSCSRPVDHQCT*LCTLQ 306
>gb|BF627283.3|BF627283 HVSMEb0004H03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004H03f, mRNA sequence
Length = 770
Score = 278 bits (602), Expect = 2e-074
Identities = 111/161 (68%), Positives = 129/161 (80%)
Frame = -1 / +1
Query: 814 MSXXXXXXXXLSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKMGHALEPGRVTFDEKMDLR 635
MS L Q VEAIKEAGN F+PSEFGMDP++MGHALEPGR+TFDEKM++R
Sbjct: 262 MSGVHFRSHNLHLQLKLVEAIKEAGNVKRFLPSEFGMDPARMGHALEPGRITFDEKMEIR 441
Query: 634 RAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYGDGNVKAIFCDEDDVATY 455
RAIE+ NIPHTY+SANCFAAYF PNLCQM TLLPPKEKVHVYG GNVKA+F DEDD+A Y
Sbjct: 442 RAIEERNIPHTYISANCFAAYFAPNLCQMGTLLPPKEKVHVYGYGNVKAVFMDEDDIAAY 621
Query: 454 TIKSVDDPRALNKTLYIRPPENILTQNDVISKWEKLSGNVL 332
TIK +DDP A NK +Y+RP NI +QN++I+KW K+SG L
Sbjct: 622 TIKCIDDPLAXNKNIYLRPQXNIPSQNELIAKWGKVSGKGL 744
Score = 211 bits (455), Expect = 4e-054
Identities = 103/148 (69%), Positives = 108/148 (72%)
Frame = +3 / -1
Query: 333 RTFPESFSHFEITSF*VKMFSGGLMYSVLFNARGSSTDLIVYVATSSSSQNIALTLPSPY 512
R FPE+F H I SF*+ M S G Y LF A GSS LIVY A SSSS N ALTLP P
Sbjct: 743 RPFPETFPHLAINSF*LGMXSCGRRYMFLFXASGSSMHLIVYAAMSSSSMNTALTLPYP* 564
Query: 513 T*TFSLGGKRVRI*HRFGQK*AAKQLAET*V*GMLASSIARLRSIFSSNVTLPGSRACPI 692
T*TFSLGG+RV I*H+ G K*AAKQLAE *V GM SSIA L SIFSSNV LPGSRACPI
Sbjct: 563 T*TFSLGGRRVPI*HKLGAK*AAKQLAEM*VWGMFLSSIALLISIFSSNVILPGSRACPI 384
Query: 693 LDGSMPNSDGIKXXXFPASLIASTXXCC 776
L GSMPNSDG K FPASL+AST C
Sbjct: 383 LAGSMPNSDGRKRLTFPASLMASTSLSC 300
Score = 178 bits (384), Expect = 3e-044
Identities = 75/163 (46%), Positives = 99/163 (60%)
Frame = +2 / -3
Query: 326 FLQNVSGKLFPLRDNIVLSQDVFWWSYV*CLVQCARIINRLDCIRCNIVFITEYSFDIAV 505
F + S L P + ++L++DV W V LV IIN LDC+RCN++F+ EY FD+A+
Sbjct: 750 FSKTFSRDLSPFSNQLILTRDVXLWP*VYVLVXGQWIINALDCVRCNVIFVHEYRFDVAI 571
Query: 506 SIYMNFFFGRQKGAHLT*VWAKVSSKAIGRNIGVRNVGIFYCTP*VHLFIKCNPSWFKSM 685
SI +NF G +KG HLT V +KVSSKA+ RN+GV NV FY +HL IKC+PSWFK M
Sbjct: 570 SINVNFLLGWKKGTHLTQVRSKVSSKAVSRNVGVGNVSFFYRPSYLHLLIKCDPSWFKGM 391
Query: 686 PHLGWIHAEFRWYKTXXVPXXXXXXXXXMLXXEXVXXXVXXGH 814
H W+HAEFRW +T + L + + V GH
Sbjct: 390 SHPCWVHAEFRW*ETLDISSFFDGLHQLELQVQVMAPEVHPGH 262
Score = 143 bits (307), Expect = 1e-033
Identities = 70/143 (48%), Positives = 81/143 (56%)
Frame = -2 / +2
Query: 813 CPXXTXXXTXSXCSXXXSRLSRRLGTXXVLYHRNSAWIHPRWGMLLNQEGLHLMKRWT*G 634
CP T C+ R S++L V YH NSAW W M LNQEG HLM+RW *
Sbjct: 263 CPGCTSGAITCTCNSSWWRPSKKLEMSSVSYHLNSAWTQQGWDMPLNQEGSHLMRRWR*E 442
Query: 633 VQ*KMPTFLTPMFLPIALLLTFAQTYVRCAPFCRPKKKFMYMETAMSKLYSVMKTMLQRI 454
+*K TF TP FL ALLLT T V+ PF P++KF +M+ A SK YS K LQR
Sbjct: 443 GR*KKETFPTPTFLLTALLLTLLLTCVKWVPFFHPRRKFTFMDMATSKRYSWTKMTLQRT 622
Query: 453 QSSLLMILAH*TRHYT*DHQKTS 385
QSS LMI TR YT H+ TS
Sbjct: 623 QSSALMIHWPXTRTYTYGHRXTS 691
>gb|BM817239.1|BM817239 HC05A08_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC05A08_T3.ab1 similar to 2'-hydroxyisoflavone
reductase,sulfur reductase,, mRNA sequence
Length = 866
Score = 191 bits (411), Expect(3) = 3e-054
Identities = 78/160 (48%), Positives = 105/160 (65%)
Frame = -1 / +3
Query: 685 HALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYG 506
HA+EPG+ F K +RRAIE IP+TYVS+N FA F P L Q+ PP EKV + G
Sbjct: 63 HAVEPGKSVFGGKARIRRAIEAEGIPYTYVSSNFFAGRFLPGLAQIGVTEPPTEKVLIMG 242
Query: 505 DGNVKAIFCDEDDVATYTIKSVDDPRALNKTLYIRPPENILTQNDVISKWEKLSGNVLEK 326
DGNVK +F E+DV TYTIK+VDDPR LNK LY+RPP N L+ N+++S WEK G LE+
Sbjct: 243 DGNVKGVFAAEEDVGTYTIKAVDDPRTLNKILYLRPPSNTLSHNELVSLWEKKLGKTLER 422
Query: 325 IHIPADEFLASMKGTDLANQAGVGHYYHIFYEGCLTNFEI 206
+++P DE L ++ + + + ++ +G TNFEI
Sbjct: 423 VYLPEDELLKKIQESPAPLNVALAISHSVWLKGDHTNFEI 542
Score = 113 bits (242), Expect(2) = 9e-026
Identities = 60/129 (46%), Positives = 75/129 (58%)
Frame = +3 / -2
Query: 300 KNSSAGMWIFSRTFPESFSHFEITSF*VKMFSGGLMYSVLFNARGSSTDLIVYVATSSSS 479
++SS+G + S P FS E +S K+ GGL Y +LF GSST LIV V TSSS+
Sbjct: 448 RSSSSGRYTLSSVLPSFFSQSETSSLWDKVLLGGLRYRILFRVLGSSTALIV*VPTSSSA 269
Query: 480 QNIALTLPSPYT*TFSLGGKRVRI*HRFGQK*AAKQLAET*V*GMLASSIARLRSIFSSN 659
T PSP TFS+GG I R G+K AK+L ET V*G+ ++S+ARL F N
Sbjct: 268 AKTPFTFPSPIMRTFSVGGSVTPICARPGKKRPAKKLEETYV*GIPSASMARLIRAFPPN 89
Query: 660 VTLPGSRAC 686
PGS AC
Sbjct: 88 TDFPGSTAC 62
Score = 34.5 bits (69), Expect(3) = 3e-054
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1 / +3
Query: 196 GADATLLYPEVQYTRMDEYMKRY 128
G +AT LYP+V Y +DEY+ ++
Sbjct: 555 GVEATELYPDVHYITVDEYLNKF 623
Score = 25.4 bits (49), Expect(3) = 3e-054
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1 / +3
Query: 748 EAGNXXXFIPSEFGMDPSKM 689
EAG+ F PSE+G D ++
Sbjct: 3 EAGHVKRFFPSEYGNDVDRV 62
Score = 23.1 bits (44), Expect(2) = 9e-026
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3 / -2
Query: 132 LFMYSSMRVY*TSGYNRVASAPS 200
LF YSS + TSG + VAS P+
Sbjct: 619 LFRYSSTVM*CTSG*SSVASTPN 551
>gb|BF261083.2|BF261083 HVSMEf0023L11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023L11f, mRNA sequence
Length = 823
Score = 171 bits (369), Expect(2) = 2e-046
Identities = 70/133 (52%), Positives = 91/133 (68%)
Frame = -1 / +1
Query: 685 HALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYG 506
HA+EPG+ F K +RRAIE IP+TYVS+N FA F P L Q+ PP EKV + G
Sbjct: 370 HAVEPGKSVFGGKARIRRAIEAEGIPYTYVSSNFFAGRFLPGLAQIGVTEPPTEKVLIMG 549
Query: 505 DGNVKAIFCDEDDVATYTIKSVDDPRALNKTLYIRPPENILTQNDVISKWEKLSGNVLEK 326
DGNVK +F E+DV TYTIK+VDDPR LNK LY++PP N L+ N+++S EK G LE+
Sbjct: 550 DGNVKGVFAAEEDVGTYTIKAVDDPRTLNKNLYLKPPSNTLSHNELVSLGEKKLGKTLER 729
Query: 325 IHIPADEFLASMK 287
+ +P DE L ++
Sbjct: 730 VSLPEDEPLEKIQ 768
Score = 106 bits (227), Expect(2) = 4e-024
Identities = 60/132 (45%), Positives = 73/132 (55%)
Frame = +3 / -3
Query: 291 IEAKNSSAGMWIFSRTFPESFSHFEITSF*VKMFSGGLMYSVLFNARGSSTDLIVYVATS 470
I ++ SS+G S P FS E +S K+ GG Y LF GSST LIV V TS
Sbjct: 764 IFSRGSSSGRDTLSSVLPSFFSPSETSSLWDKVLLGGFRYRFLFRVLGSSTALIV*VPTS 585
Query: 471 SSSQNIALTLPSPYT*TFSLGGKRVRI*HRFGQK*AAKQLAET*V*GMLASSIARLRSIF 650
SS+ T PSP TFS+GG I R G+K AK+L ET V*G+ ++S+ARL F
Sbjct: 584 SSAAKTPFTFPSPIMRTFSVGGSVTPICARPGKKRPAKKLEETYV*GIPSASMARLIRAF 405
Query: 651 SSNVTLPGSRAC 686
N PGS AC
Sbjct: 404 PPNTDFPGSTAC 369
Score = 34.1 bits (68), Expect(2) = 2e-046
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1 / +1
Query: 784 LSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKM 689
L Q + AIKEAG+ F PSE+G D ++
Sbjct: 274 LPDQTRIISAIKEAGHVKRFFPSEYGNDVDRV 369
Score = 24.4 bits (47), Expect(2) = 4e-024
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3 / -3
Query: 702 SMPNSDGIKXXXFPASLIA 758
S+P SDG PASLIA
Sbjct: 356 SLPYSDGKNLFTCPASLIA 300
>gb|BM442407.2|BM442407 EBan01_SQ003_B16_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_B16 5', mRNA sequence
Length = 635
Score = 169 bits (364), Expect(2) = 1e-045
Identities = 67/122 (54%), Positives = 86/122 (70%)
Frame = -1 / +3
Query: 685 HALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYG 506
HA+EPG+ F K +RRAIE IP+TYVS+N FA F P L Q+ PP EKV + G
Sbjct: 270 HAVEPGKSVFGGKARIRRAIEAEGIPYTYVSSNFFAGRFLPGLAQIGVTEPPTEKVLIMG 449
Query: 505 DGNVKAIFCDEDDVATYTIKSVDDPRALNKTLYIRPPENILTQNDVISKWEKLSGNVLEK 326
DGNVK +F E+DV TYTIK+VDDPR LNK LY++PP N L+ N+++S WEK G LE+
Sbjct: 450 DGNVKGVFAAEEDVGTYTIKAVDDPRTLNKILYLKPPSNTLSHNELVSLWEKKLGKTLER 629
Query: 325 IH 320
++
Sbjct: 630 VY 635
Score = 104 bits (221), Expect(2) = 2e-023
Identities = 56/122 (45%), Positives = 68/122 (55%)
Frame = +3 / -2
Query: 321 WIFSRTFPESFSHFEITSF*VKMFSGGLMYSVLFNARGSSTDLIVYVATSSSSQNIALTL 500
+ S P FS E +S K+ GG Y +LF GSST LIV V TSSS+ T
Sbjct: 634 YTLSSVLPSFFSQSETSSLWDKVLLGGFRYRILFRVLGSSTALIV*VPTSSSAAKTPFTF 455
Query: 501 PSPYT*TFSLGGKRVRI*HRFGQK*AAKQLAET*V*GMLASSIARLRSIFSSNVTLPGSR 680
PSP TFS+GG I R G+K AK+L ET V*G+ ++S+ARL F N PGS
Sbjct: 454 PSPIMRTFSVGGSVTPICARPGKKRPAKKLEETYV*GIPSASMARLIRAFPPNTDFPGST 275
Query: 681 AC 686
AC
Sbjct: 274 AC 269
Score = 34.1 bits (68), Expect(2) = 1e-045
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1 / +3
Query: 784 LSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKM 689
L Q + AIKEAG+ F PSE+G D ++
Sbjct: 174 LPDQTRIISAIKEAGHVKRFFPSEYGNDVDRV 269
Score = 24.4 bits (47), Expect(2) = 2e-023
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3 / -2
Query: 702 SMPNSDGIKXXXFPASLIA 758
S+P SDG PASLIA
Sbjct: 256 SLPYSDGKNLFTCPASLIA 200
>gb|BU987748.1|BU987748 HF15K13r HF Hordeum vulgare subsp. vulgare cDNA clone HF15K13
5-PRIME, mRNA sequence
Length = 475
Score = 147 bits (315), Expect(2) = 7e-039
Identities = 59/126 (46%), Positives = 81/126 (64%)
Frame = -1 / +1
Query: 583 FAAYFCPNLCQMRTLLPPKEKVHVYGDGNVKAIFCDEDDVATYTIKSVDDPRALNKTLYI 404
FA F P L Q+ PP EKV + GDGNVK +F E+DV TYTIK+VDDPR LNK LY+
Sbjct: 79 FAGRFLPGLAQIGVTEPPTEKVLIMGDGNVKGVFAAEEDVGTYTIKAVDDPRTLNKILYL 258
Query: 403 RPPENILTQNDVISKWEKLSGNVLEKIHIPADEFLASMKGTDLANQAGVGHYYHIFYEGC 224
RPP N L+ N+++S WEK G LE++++P DE L ++ + + + ++ +G
Sbjct: 259 RPPSNTLSHNELVSLWEKKLGKTLERVYLPEDELLKKIQESPAPLNVALAISHSVWLKGD 438
Query: 223 LTNFEI 206
TNFEI
Sbjct: 439 HTNFEI 456
Score = 33.6 bits (67), Expect(2) = 7e-039
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -1 / +2
Query: 649 KMDLRRAIEDANIPHTYVSANCFAAYFCPNL 557
K +RRAIE IP+TYVS+ A C L
Sbjct: 14 KARIRRAIEAEGIPYTYVSSTSLLAVSCQAL 106
>gb|CA022392.1|CA022392 HZ42P20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42P20
5-PRIME, mRNA sequence
Length = 547
Score = 150 bits (323), Expect = 7e-036
Identities = 62/91 (68%), Positives = 70/91 (76%)
Frame = -1 / +1
Query: 814 MSXXXXXXXXLSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKMGHALEPGRVTFDEKMDLR 635
MS L Q VEAIKEAGN F+PSEFGMDP++MGHALEPGR+TFDEKM++R
Sbjct: 274 MSGVHFRSHNLHLQLKLVEAIKEAGNVKRFLPSEFGMDPARMGHALEPGRITFDEKMEIR 453
Query: 634 RAIEDANIPHTYVSANCFAAYFCPNLCQMRT 542
RAIE+ NI HTY+SANCFAAYF PNL QM T
Sbjct: 454 RAIEERNIAHTYISANCFAAYFAPNLGQMGT 546
Score = 113 bits (241), Expect = 1e-024
Identities = 56/78 (71%), Positives = 58/78 (74%)
Frame = +3 / -3
Query: 543 VRI*HRFGQK*AAKQLAET*V*GMLASSIARLRSIFSSNVTLPGSRACPILDGSMPNSDG 722
V I* + G K*AAKQLAE *V M SSIA L SIFSSNV LPGSRACPIL GSMPNSDG
Sbjct: 545 VPI*PKLGAK*AAKQLAEM*VWAMFLSSIALLISIFSSNVILPGSRACPILAGSMPNSDG 366
Query: 723 IKXXXFPASLIASTXXCC 776
K FPASL+AST C
Sbjct: 365 RKRLTFPASLMASTSLSC 312
Score = 102 bits (218), Expect = 2e-021
Identities = 43/91 (47%), Positives = 53/91 (58%)
Frame = +2 / -2
Query: 542 GAHLT*VWAKVSSKAIGRNIGVRNVGIFYCTP*VHLFIKCNPSWFKSMPHLGWIHAEFRW 721
G HLT V +KVSSKA+ RN+GV NV FY +HL IKC+PSWFK M H W+HAEFRW
Sbjct: 546 GTHLTQVRSKVSSKAVSRNVGVGNVSFFYRPSYLHLLIKCDPSWFKGMSHPCWVHAEFRW 367
Query: 722 YKTXXVPXXXXXXXXXMLXXEXVXXXVXXGH 814
+T + L + + V GH
Sbjct: 366 *ETLDISSFFDGLHQLELQVQVMAPEVHPGH 274
>gb|CB884147.1|CB884147 HZ65J24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65J24
5-PRIME, mRNA sequence
Length = 567
Score = 126 bits (270), Expect(2) = 7e-035
Identities = 50/107 (46%), Positives = 70/107 (65%)
Frame = -1 / +1
Query: 682 ALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYGD 503
A+EP + F K +RRAIE +IP+TYV AN FA Y P + Q+ + PP + V + GD
Sbjct: 247 AVEPAKSIFAIKAGIRRAIEGEDIPYTYVVANYFAGYSLPTIGQVLSPAPPTDNVVILGD 426
Query: 502 GNVKAIFCDEDDVATYTIKSVDDPRALNKTLYIRPPENILTQNDVIS 362
G K +F DE D+ YT+ + DDPRA NK LYI+PP N L+ N++++
Sbjct: 427 GETKVVFVDEADIGAYTVLAADDPRAENKVLYIKPPANTLSHNELVA 567
Score = 40.9 bits (83), Expect(2) = 7e-035
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -1 / +1
Query: 784 LSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKMG 686
++ Q + AIKEAGN F PSEFG+D + G
Sbjct: 148 IAEQTKLIAAIKEAGNVKRFFPSEFGLDVDRTG 246
>gb|CA022456.1|CA022456 HZ43D23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43D23
5-PRIME, mRNA sequence
Length = 536
Score = 125 bits (268), Expect = 3e-028
Identities = 51/76 (67%), Positives = 59/76 (77%)
Frame = -1 / +3
Query: 814 MSXXXXXXXXLSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKMGHALEPGRVTFDEKMDLR 635
MS L Q VEAIKEAGN F+PSEFGMDP++MGHALEPGR+TFDEKM++R
Sbjct: 309 MSGVHFRSHNLHLQLKLVEAIKEAGNVKRFLPSEFGMDPARMGHALEPGRITFDEKMEIR 488
Query: 634 RAIEDANIPHTYVSAN 587
RAIE+ NIPHTY+SAN
Sbjct: 489 RAIEERNIPHTYISAN 536
>gb|BI960217.1|BI960217 HVSMEn0023M07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023M07f, mRNA sequence
Length = 636
Score = 102 bits (217), Expect(2) = 1e-027
Identities = 42/89 (47%), Positives = 56/89 (62%)
Frame = -1 / +2
Query: 682 ALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYGD 503
A+EP + F K +RRAIE +IP+TYV AN FA Y P + Q+ + PP + V + GD
Sbjct: 365 AVEPAKSIFAIKAGIRRAIEGEDIPYTYVVANYFAGYSLPTIGQVLSPAPPTDNVVILGD 544
Query: 502 GNVKAIFCDEDDVATYTIKSVDDPRALNK 416
G K +F DE D+ YT+ + DDPRA NK
Sbjct: 545 GETKVVFVDEADIGAYTVLAADDPRAENK 631
Score = 40.9 bits (83), Expect(2) = 1e-027
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -1 / +2
Query: 784 LSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKMG 686
++ Q + AIKEAGN F PSEFG+D + G
Sbjct: 266 IAEQTKLIAAIKEAGNVKRFFPSEFGLDVDRTG 364
>gb|BF628668.2|BF628668 HVSMEb0006P17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006P17f, mRNA sequence
Length = 714
Score = 70.3 bits (147), Expect(3) = 4e-027
Identities = 30/67 (44%), Positives = 40/67 (59%)
Frame = -1 / +2
Query: 682 ALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYGD 503
A+EP + F K +RRAIE +IP+TYV AN FA Y P + Q+ + PP + V + GD
Sbjct: 419 AVEPAKSIFAIKAGIRRAIEGEDIPYTYVVANYFAGYSLPTIGQVLSPAPPTDNVVILGD 598
Query: 502 GNVKAIF 482
G K F
Sbjct: 599 GETKVFF 619
Score = 47.8 bits (98), Expect(3) = 4e-027
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -1 / +3
Query: 493 KAIFCDEDDVATYTIKSVDDPRALNKTLYIRPP 395
K+ F DE D+ YT+ + DDPRA NK L I+PP
Sbjct: 609 KSSFVDEADIGAYTVLAADDPRAENKVLDIKPP 707
Score = 40.9 bits (83), Expect(3) = 4e-027
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -1 / +2
Query: 784 LSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKMG 686
++ Q + AIKEAGN F PSEFG+D + G
Sbjct: 320 IAEQTKLIAAIKEAGNVKRFFPSEFGLDVDRTG 418
>gb|AJ461820.1|AJ461820 AJ461820 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200012E06F1, mRNA sequence
Length = 180
Score = 121 bits (259), Expect = 5e-027
Identities = 44/59 (74%), Positives = 54/59 (91%)
Frame = -1 / +2
Query: 316 PADEFLASMKGTDLANQAGVGHYYHIFYEGCLTNFEIGDDGADATLLYPEVQYTRMDEY 140
P+DEFLASM+GTD+ NQ VGH++HIFYEGC TNF+IG+DG +A+LLYPEVQYTRM+EY
Sbjct: 2 PSDEFLASMEGTDITNQMAVGHFHHIFYEGCSTNFDIGEDGEEASLLYPEVQYTRMEEY 178
>gb|BQ765117.1|BQ765117 EBca01_SQ005_H22_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_H22 5', mRNA sequence
Length = 668
Score = 98.7 bits (209), Expect(2) = 1e-026
Identities = 40/86 (46%), Positives = 54/86 (62%)
Frame = -1 / +2
Query: 682 ALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYGD 503
A+EP + F K +RRAIE +IP+TYV AN FA Y P + Q+ + PP + V + GD
Sbjct: 410 AVEPAKSIFAIKAGIRRAIEGEDIPYTYVVANYFAGYSLPTIGQVLSPAPPTDNVVILGD 589
Query: 502 GNVKAIFCDEDDVATYTIKSVDDPRA 425
G K +F DE D+ YT+ + DDPRA
Sbjct: 590 GETKVVFVDEADIGAYTVLAADDPRA 667
Score = 40.9 bits (83), Expect(2) = 1e-026
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -1 / +2
Query: 784 LSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKMG 686
++ Q + AIKEAGN F PSEFG+D + G
Sbjct: 311 IAEQTKLIAAIKEAGNVKRFFPSEFGLDVDRTG 409
>tpe|BN000696.1| TPA: Hordeum vulgare subsp. vulgare mRNA for leucoanthocyanidin
reductase (lar gene)
Length = 1381
Score = 78.0 bits (164), Expect(4) = 7e-024
Identities = 28/80 (35%), Positives = 48/80 (60%)
Frame = -1 / +3
Query: 535 PPKEKVHVYGDGNVKAIFCDEDDVATYTIKSVDDPRALNKTLYIRPPENILTQNDVISKW 356
PP ++ +YGDG V+A F D+ +T+K+ D R++NK ++ RP N+L+ N++ W
Sbjct: 558 PPLDRFQIYGDGTVRAFFVAGTDIGKFTVKAAYDARSVNKAVHFRPACNLLSTNEMACLW 737
Query: 355 EKLSGNVLEKIHIPADEFLA 296
E G L ++ + +E LA
Sbjct: 738 ESKIGRTLPRVTLSKEELLA 797
Score = 35.0 bits (70), Expect(4) = 7e-024
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1 / +3
Query: 658 FDEKMDLRRAIEDANIPHTYVSANCFAAY 572
++EK +RRA E A +P+TY+ N A +
Sbjct: 435 YEEKRRVRRAAEAAGVPYTYICCNSIAGW 521
Score = 29.9 bits (59), Expect(4) = 7e-024
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1 / +3
Query: 763 VEAIKEAGNXXXFIPSEFGMD 701
++AI+ AG F+PSEFG D
Sbjct: 333 IKAIQAAGTVKRFLPSEFGHD 395
Score = 22.1 bits (42), Expect(4) = 7e-024
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1 / +3
Query: 247 YHIFYEGCLTNFEI 206
+ IF GC TNF I
Sbjct: 846 HDIFINGCQTNFGI 887
>gb|CB882784.1|CB882784 HL02N10w HL Hordeum vulgare subsp. vulgare cDNA clone HL02N10
3-PRIME, mRNA sequence
Length = 641
Score = 94.1 bits (199), Expect(2) = 3e-023
Identities = 39/73 (53%), Positives = 48/73 (65%)
Frame = -1 / +1
Query: 685 HALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYG 506
HA+EPG+ F K +RRAIE IP+TYVS+N FA F P L Q+ PP EKV + G
Sbjct: 421 HAVEPGKSVFGGKARIRRAIEAEGIPYTYVSSNFFAGRFLPGLAQIGVTEPPTEKVLIMG 600
Query: 505 DGNVKAIFCDEDD 467
DGNVK +F E+D
Sbjct: 601 DGNVKGVFAAEED 639
Score = 34.1 bits (68), Expect(2) = 3e-023
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1 / +1
Query: 784 LSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKM 689
L Q + AIKEAG+ F PSE+G D ++
Sbjct: 325 LPDQTRIISAIKEAGHVKRFFPSEYGNDVDRV 420
>gb|BI958500.1|BI958500 HVSMEn0015F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015F10f, mRNA sequence
Length = 657
Score = 86.3 bits (182), Expect(2) = 6e-023
Identities = 35/78 (44%), Positives = 48/78 (61%)
Frame = -1 / +2
Query: 682 ALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYGD 503
A+EP + F K +RRAIE +IP+TYV AN FA Y P + Q+ + PP + V + GD
Sbjct: 416 AVEPAKSIFAIKAGIRRAIEGEDIPYTYVVANYFAGYSLPTIGQVLSPAPPTDNVVILGD 595
Query: 502 GNVKAIFCDEDDVATYTI 449
G K +F DE D+ YT+
Sbjct: 596 GETKVVFVDEADIGAYTV 649
Score = 40.9 bits (83), Expect(2) = 6e-023
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -1 / +2
Query: 784 LSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKMG 686
++ Q + AIKEAGN F PSEFG+D + G
Sbjct: 317 IAEQTKLIAAIKEAGNVKRFFPSEFGLDVDRTG 415
>gb|BI957720.1|BI957720 HVSMEn0010N21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010N21f, mRNA sequence
Length = 660
Score = 84.9 bits (179), Expect(2) = 2e-022
Identities = 35/77 (45%), Positives = 47/77 (61%)
Frame = -1 / +2
Query: 682 ALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYGD 503
A+EP + F K +RRAIE +IP+TYV AN FA Y P + Q+ + PP + V + GD
Sbjct: 398 AVEPAKSIFAIKAGIRRAIEGEDIPYTYVVANYFAGYSLPTIGQVLSPAPPTDNVVILGD 577
Query: 502 GNVKAIFCDEDDVATYT 452
G K +F DE D+ YT
Sbjct: 578 GETKVVFVDEADIGAYT 628
Score = 40.9 bits (83), Expect(2) = 2e-022
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -1 / +2
Query: 784 LSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKMG 686
++ Q + AIKEAGN F PSEFG+D + G
Sbjct: 299 IAEQTKLIAAIKEAGNVKRFFPSEFGLDVDRTG 397
>gb|BI959197.1|BI959197 HVSMEn0018J22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018J22f, mRNA sequence
Length = 646
Score = 84.9 bits (179), Expect(2) = 2e-022
Identities = 35/77 (45%), Positives = 47/77 (61%)
Frame = -1 / +1
Query: 682 ALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYGD 503
A+EP + F K +RRAIE +IP+TYV AN FA Y P + Q+ + PP + V + GD
Sbjct: 412 AVEPAKSIFAIKAGIRRAIEGEDIPYTYVVANYFAGYSLPTIGQVLSPAPPTDNVVILGD 591
Query: 502 GNVKAIFCDEDDVATYT 452
G K +F DE D+ YT
Sbjct: 592 GETKVVFVDEADIGAYT 642
Score = 40.9 bits (83), Expect(2) = 2e-022
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -1 / +1
Query: 784 LSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKMG 686
++ Q + AIKEAGN F PSEFG+D + G
Sbjct: 313 IAEQTKLIAAIKEAGNVKRFFPSEFGLDVXRTG 411
>gb|BI960086.1|BI960086 HVSMEn0023C12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023C12f, mRNA sequence
Length = 627
Score = 79.4 bits (167), Expect(2) = 7e-021
Identities = 33/73 (45%), Positives = 45/73 (61%)
Frame = -1 / +3
Query: 682 ALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYGD 503
A+EP + F K +RRAIE +IP+TYV AN FA Y P + Q+ + PP + V + GD
Sbjct: 402 AVEPAKSIFAIKAGIRRAIEGEDIPYTYVVANYFAGYSLPTIGQVLSPAPPTDNVVILGD 581
Query: 502 GNVKAIFCDEDDV 464
G K +F DE D+
Sbjct: 582 GETKVVFVDEADI 620
Score = 40.9 bits (83), Expect(2) = 7e-021
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -1 / +3
Query: 784 LSXQHXXVEAIKEAGNXXXFIPSEFGMDPSKMG 686
++ Q + AIKEAGN F PSEFG+D + G
Sbjct: 303 IAEQTKLIAAIKEAGNVKRFFPSEFGLDVDRTG 401
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 377,386,398
Number of Sequences: 312970
Number of extensions: 5923917
Number of successful extensions: 62520
Number of sequences better than 1.0e-020: 26
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 9178615102
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)