TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665460.2.1
(649 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF624819.3|BF624819 HVSMEa0017N07f Hordeum vulgare seedl... 233 8e-061
gb|BF255465.2|BF255465 HVSMEf0006O24f Hordeum vulgare seedl... 233 8e-061
gb|BF260744.3|BF260744 HVSMEf0022N07f Hordeum vulgare seedl... 233 8e-061
gb|CB876810.1|CB876810 HP02H19T HP Hordeum vulgare subsp. v... 228 2e-059
gb|CB879498.1|CB879498 HP02H19w HP Hordeum vulgare subsp. v... 228 2e-059
gb|BU969789.1|BU969789 HB12J02r BC Hordeum vulgare subsp. v... 185 2e-046
gb|BQ472572.1|BQ472572 HB09C12T BC Hordeum vulgare subsp. v... 164 5e-040
gb|BU968318.1|BU968318 HB07C12r BC Hordeum vulgare subsp. v... 164 5e-040
gb|CA017100.1|CA017100 HV14M18u HV Hordeum vulgare subsp. v... 139 8e-040
gb|CA001848.1|CA001848 HS05M10r HS Hordeum vulgare subsp. v... 142 2e-033
gb|BI947034.1|BI947034 HVSMEl0003F09f Hordeum vulgare spike... 116 1e-025
gb|CA007888.1|CA007888 HU09E19r HU Hordeum vulgare subsp. v... 91 2e-025
gb|BU970588.1|BU970588 HB15B14r BC Hordeum vulgare subsp. v... 107 5e-023
gb|BU970614.1|BU970614 HB15C18r BC Hordeum vulgare subsp. v... 107 5e-023
>gb|BF624819.3|BF624819 HVSMEa0017N07f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017N07f, mRNA sequence
Length = 672
Score = 233 bits (503), Expect = 8e-061
Identities = 86/132 (65%), Positives = 105/132 (79%)
Frame = +2 / +3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+L+++NSGI SCIP EIG L +L VLD+SF + GTLP+++ M ALEQLDVAHN L
Sbjct: 78 LNELLMINSGIRSCIPQEIGWLRELTVLDVSFNQLQGTLPESMAGMHALEQLDVAHNELT 257
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IPE +C LP L NFTYSYN+FCGEP RC + R DDRQNCIAGRPDQRP ++C++FLH
Sbjct: 258 GHIPEGICALPRLANFTYSYNYFCGEPERCTALRRNDDRQNCIAGRPDQRPADQCLAFLH 437
Query: 362 QPRVRCDAHGCI 397
+P V CD HGC+
Sbjct: 438 RPPVHCDGHGCL 473
Score = 152 bits (326), Expect = 2e-036
Identities = 78/133 (58%), Positives = 84/133 (63%)
Frame = -2 / -3
Query: 399 AMHPWASQRTLGWCRNEMHSSPGRWSGRPAMQFWRSSTRGTSRHRCGSPQKKLYE*VKFL 220
A P SQ T G CRN H S GRWSGRPAMQF RSS R ++ HR GSPQK LYE*VK
Sbjct: 475 AKQPCPSQCTGGRCRNARHWSAGRWSGRPAMQFCRSSLRRSAVHRSGSPQK*LYE*VKLA 296
Query: 219 RCGRPQTLSGISPARRLCATSSCSSARMLPIVSGRVPAMLVKLRSSTXSLASLPISGGMQ 40
G Q SG+ P LCATSSCSSA + I SG VP +KL SST S S PIS GMQ
Sbjct: 295 SRGSAQIPSGMCPVSSLCATSSCSSACIPAIDSGSVPWSWLKLTSSTVSSRSHPISCGMQ 116
Query: 39 EEMPLLSRIRSLS 1
+ MP L SLS
Sbjct: 115 DRMPELIMRSSLS 77
>gb|BF255465.2|BF255465 HVSMEf0006O24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006O24f, mRNA sequence
Length = 603
Score = 233 bits (503), Expect = 8e-061
Identities = 86/132 (65%), Positives = 105/132 (79%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+L+++NSGI SCIP EIG L +L VLD+SF + GTLP+++ M ALEQLDVAHN L
Sbjct: 179 LNELLMINSGIRSCIPQEIGWLRELTVLDVSFNQLQGTLPESMAGMHALEQLDVAHNELT 358
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IPE +C LP L NFTYSYN+FCGEP RC + R DDRQNCIAGRPDQRP ++C++FLH
Sbjct: 359 GHIPEGICALPRLANFTYSYNYFCGEPERCTALRRNDDRQNCIAGRPDQRPADQCLAFLH 538
Query: 362 QPRVRCDAHGCI 397
+P V CD HGC+
Sbjct: 539 RPPVHCDGHGCL 574
Score = 152 bits (326), Expect = 2e-036
Identities = 78/133 (58%), Positives = 84/133 (63%)
Frame = -2 / -1
Query: 399 AMHPWASQRTLGWCRNEMHSSPGRWSGRPAMQFWRSSTRGTSRHRCGSPQKKLYE*VKFL 220
A P SQ T G CRN H S GRWSGRPAMQF RSS R ++ HR GSPQK LYE*VK
Sbjct: 576 AKQPCPSQCTGGRCRNARHWSAGRWSGRPAMQFCRSSLRRSAVHRSGSPQK*LYE*VKLA 397
Query: 219 RCGRPQTLSGISPARRLCATSSCSSARMLPIVSGRVPAMLVKLRSSTXSLASLPISGGMQ 40
G Q SG+ P LCATSSCSSA + I SG VP +KL SST S S PIS GMQ
Sbjct: 396 SRGSAQIPSGMCPVSSLCATSSCSSACIPAIDSGSVPWSWLKLTSSTVSSRSHPISCGMQ 217
Query: 39 EEMPLLSRIRSLS 1
+ MP L SLS
Sbjct: 216 DRMPELIMRSSLS 178
>gb|BF260744.3|BF260744 HVSMEf0022N07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022N07f, mRNA sequence
Length = 674
Score = 233 bits (503), Expect = 8e-061
Identities = 86/132 (65%), Positives = 105/132 (79%)
Frame = +2 / +3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+L+++NSGI SCIP EIG L +L VLD+SF + GTLP+++ M ALEQLDVAHN L
Sbjct: 78 LNELLMINSGIRSCIPQEIGWLRELTVLDVSFNQLQGTLPESMAGMHALEQLDVAHNELT 257
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IPE +C LP L NFTYSYN+FCGEP RC + R DDRQNCIAGRPDQRP ++C++FLH
Sbjct: 258 GHIPEGICALPRLANFTYSYNYFCGEPERCTALRRNDDRQNCIAGRPDQRPADQCLAFLH 437
Query: 362 QPRVRCDAHGCI 397
+P V CD HGC+
Sbjct: 438 RPPVHCDGHGCL 473
Score = 152 bits (326), Expect = 2e-036
Identities = 78/133 (58%), Positives = 84/133 (63%)
Frame = -2 / -2
Query: 399 AMHPWASQRTLGWCRNEMHSSPGRWSGRPAMQFWRSSTRGTSRHRCGSPQKKLYE*VKFL 220
A P SQ T G CRN H S GRWSGRPAMQF RSS R ++ HR GSPQK LYE*VK
Sbjct: 475 AKQPCPSQCTGGRCRNARHWSAGRWSGRPAMQFCRSSLRRSAVHRSGSPQK*LYE*VKLA 296
Query: 219 RCGRPQTLSGISPARRLCATSSCSSARMLPIVSGRVPAMLVKLRSSTXSLASLPISGGMQ 40
G Q SG+ P LCATSSCSSA + I SG VP +KL SST S S PIS GMQ
Sbjct: 295 SRGSAQIPSGMCPVSSLCATSSCSSACIPAIDSGSVPWSWLKLTSSTVSSRSHPISCGMQ 116
Query: 39 EEMPLLSRIRSLS 1
+ MP L SLS
Sbjct: 115 DRMPELIMRSSLS 77
>gb|CB876810.1|CB876810 HP02H19T HP Hordeum vulgare subsp. vulgare cDNA clone HP02H19
5-PRIME, mRNA sequence
Length = 648
Score = 228 bits (493), Expect = 2e-059
Identities = 85/132 (64%), Positives = 104/132 (78%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+L+++NSGI SCIP EIG L +L VLD+SF + GTLP+++ M ALEQLDVAHN L
Sbjct: 203 LNELLMINSGIRSCIPQEIGWLRELTVLDVSFNQLQGTLPESMAGMHALEQLDVAHNELT 382
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IPE +C LP L NFTYSYN+FCGE RC + R DDRQNCIAGRPDQRP ++C++FLH
Sbjct: 383 GHIPEGICALPRLANFTYSYNYFCGELERCTALRRNDDRQNCIAGRPDQRPADQCLAFLH 562
Query: 362 QPRVRCDAHGCI 397
+P V CD HGC+
Sbjct: 563 RPPVHCDGHGCL 598
Score = 149 bits (320), Expect = 1e-035
Identities = 77/133 (57%), Positives = 83/133 (62%)
Frame = -2 / -1
Query: 399 AMHPWASQRTLGWCRNEMHSSPGRWSGRPAMQFWRSSTRGTSRHRCGSPQKKLYE*VKFL 220
A P SQ T G CRN H S GRWSGRPAMQF RSS R ++ HR SPQK LYE*VK
Sbjct: 600 AKQPCPSQCTGGRCRNARHWSAGRWSGRPAMQFCRSSLRRSAVHRSSSPQK*LYE*VKLA 421
Query: 219 RCGRPQTLSGISPARRLCATSSCSSARMLPIVSGRVPAMLVKLRSSTXSLASLPISGGMQ 40
G Q SG+ P LCATSSCSSA + I SG VP +KL SST S S PIS GMQ
Sbjct: 420 SRGSAQIPSGMCPVSSLCATSSCSSACIPAIDSGSVPWSWLKLTSSTVSSRSHPISCGMQ 241
Query: 39 EEMPLLSRIRSLS 1
+ MP L SLS
Sbjct: 240 DRMPELIMRSSLS 202
>gb|CB879498.1|CB879498 HP02H19w HP Hordeum vulgare subsp. vulgare cDNA clone HP02H19
3-PRIME, mRNA sequence
Length = 648
Score = 228 bits (493), Expect = 2e-059
Identities = 85/132 (64%), Positives = 104/132 (78%)
Frame = +2 / -2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+L+++NSGI SCIP EIG L +L VLD+SF + GTLP+++ M ALEQLDVAHN L
Sbjct: 497 LNELLMINSGIRSCIPQEIGWLRELTVLDVSFNQLQGTLPESMAGMHALEQLDVAHNELT 318
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IPE +C LP L NFTYSYN+FCGE RC + R DDRQNCIAGRPDQRP ++C++FLH
Sbjct: 317 GHIPEGICALPRLANFTYSYNYFCGELERCTALRRNDDRQNCIAGRPDQRPADQCLAFLH 138
Query: 362 QPRVRCDAHGCI 397
+P V CD HGC+
Sbjct: 137 RPPVHCDGHGCL 102
Score = 149 bits (320), Expect = 1e-035
Identities = 77/133 (57%), Positives = 83/133 (62%)
Frame = -2 / +1
Query: 399 AMHPWASQRTLGWCRNEMHSSPGRWSGRPAMQFWRSSTRGTSRHRCGSPQKKLYE*VKFL 220
A P SQ T G CRN H S GRWSGRPAMQF RSS R ++ HR SPQK LYE*VK
Sbjct: 100 AKQPCPSQCTGGRCRNARHWSAGRWSGRPAMQFCRSSLRRSAVHRSSSPQK*LYE*VKLA 279
Query: 219 RCGRPQTLSGISPARRLCATSSCSSARMLPIVSGRVPAMLVKLRSSTXSLASLPISGGMQ 40
G Q SG+ P LCATSSCSSA + I SG VP +KL SST S S PIS GMQ
Sbjct: 280 SRGSAQIPSGMCPVSSLCATSSCSSACIPAIDSGSVPWSWLKLTSSTVSSRSHPISCGMQ 459
Query: 39 EEMPLLSRIRSLS 1
+ MP L SLS
Sbjct: 460 DRMPELIMRSSLS 498
>gb|BU969789.1|BU969789 HB12J02r BC Hordeum vulgare subsp. vulgare cDNA clone HB12J02
5-PRIME, mRNA sequence
Length = 421
Score = 185 bits (398), Expect = 2e-046
Identities = 76/131 (58%), Positives = 93/131 (70%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L +LILLN+ ISSCIPPEIGKL KL VLDLS AG LP++IG+M +LE ++V +N L
Sbjct: 29 LVELILLNTSISSCIPPEIGKLKKLKVLDLSHNEFAGELPESIGDMESLEVINVGYNMLT 208
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G +PE++C LP+LKN T N+FC EP CL VPR DDR NCI P QR E+CI+ H
Sbjct: 209 GAVPEAICLLPNLKNLTVVGNYFCEEPVSCLHVPRRDDRMNCIPDWPHQRSHEQCIAXEH 388
Query: 362 QPRVRCDAHGC 394
+P V C A GC
Sbjct: 389 RPPVHCGADGC 421
Score = 121 bits (258), Expect = 5e-027
Identities = 66/130 (50%), Positives = 74/130 (56%)
Frame = -2 / -2
Query: 390 PWASQRTLGWCRNEMHSSPGRWSGRPAMQFWRSSTRGTSRHRCGSPQKKLYE*VKFLRCG 211
P A Q T G C MH S RW G+ MQF RSS RGT R GS QK L V+F R G
Sbjct: 417 PSAPQCTGGRCSKAMHCSCERWCGQSGMQFIRSSRRGTWRQDTGSSQK*LPTTVRFFRFG 238
Query: 210 RPQTLSGISPARRLCATSSCSSARMLPIVSGRVPAMLVKLRSSTXSLASLPISGGMQEEM 31
Q SG +P L T S M P++SG PA + LRSST S SLPISGGMQE M
Sbjct: 237 SRQMASGTAPVSMLYPTLITSRLSMSPMLSGSSPANSLWLRSSTLSFFSLPISGGMQELM 58
Query: 30 PLLSRIRSLS 1
+LSR+ S S
Sbjct: 57 LVLSRMSSTS 28
>gb|BQ472572.1|BQ472572 HB09C12T BC Hordeum vulgare subsp. vulgare cDNA clone HB09C12
5-PRIME, mRNA sequence
Length = 486
Score = 164 bits (352), Expect = 5e-040
Identities = 59/85 (69%), Positives = 68/85 (80%)
Frame = +2 / +1
Query: 143 ALEQLDVAHNRLAGEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRP 322
ALEQLDVAHN L G IPE +C LP L NFTYSYN+FCGE RC + R DDRQNCIAGRP
Sbjct: 13 ALEQLDVAHNELTGHIPEGICALPRLANFTYSYNYFCGELERCTALRRNDDRQNCIAGRP 192
Query: 323 DQRPGEECISFLHQPRVRCDAHGCI 397
DQRP ++C++FLH+P V CD HGC+
Sbjct: 193 DQRPADQCLAFLHRPPVHCDGHGCL 267
Score = 112 bits (240), Expect(2) = 8e-025
Identities = 53/86 (61%), Positives = 56/86 (65%)
Frame = -2 / -2
Query: 399 AMHPWASQRTLGWCRNEMHSSPGRWSGRPAMQFWRSSTRGTSRHRCGSPQKKLYE*VKFL 220
A P SQ T G CRN H S GRWSGRPAMQF RSS R ++ HR SPQK LYE*VK
Sbjct: 269 AKQPCPSQCTGGRCRNARHWSAGRWSGRPAMQFCRSSLRRSAVHRSSSPQK*LYE*VKLA 90
Query: 219 RCGRPQTLSGISPARRLCATSSCSSA 142
G Q SG+ P LCATSSCSSA
Sbjct: 89 SRGSAQIPSGMCPVSSLCATSSCSSA 12
Score = 21.7 bits (41), Expect(2) = 8e-025
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1 / -3
Query: 595 IYESIINLLLRNKSYSIYHVYAFT 524
+Y SII +L K +VY +T
Sbjct: 400 VYNSIITILCCKKMTVYSYVYIYT 329
>gb|BU968318.1|BU968318 HB07C12r BC Hordeum vulgare subsp. vulgare cDNA clone HB07C12
5-PRIME, mRNA sequence
Length = 504
Score = 164 bits (352), Expect = 5e-040
Identities = 59/85 (69%), Positives = 68/85 (80%)
Frame = +2 / +1
Query: 143 ALEQLDVAHNRLAGEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRP 322
ALEQLDVAHN L G IPE +C LP L NFTYSYN+FCGE RC + R DDRQNCIAGRP
Sbjct: 13 ALEQLDVAHNELTGHIPEGICALPRLANFTYSYNYFCGELERCTALRRNDDRQNCIAGRP 192
Query: 323 DQRPGEECISFLHQPRVRCDAHGCI 397
DQRP ++C++FLH+P V CD HGC+
Sbjct: 193 DQRPADQCLAFLHRPPVHCDGHGCL 267
Score = 112 bits (240), Expect(2) = 8e-025
Identities = 53/86 (61%), Positives = 56/86 (65%)
Frame = -2 / -2
Query: 399 AMHPWASQRTLGWCRNEMHSSPGRWSGRPAMQFWRSSTRGTSRHRCGSPQKKLYE*VKFL 220
A P SQ T G CRN H S GRWSGRPAMQF RSS R ++ HR SPQK LYE*VK
Sbjct: 269 AKQPCPSQCTGGRCRNARHWSAGRWSGRPAMQFCRSSLRRSAVHRSSSPQK*LYE*VKLA 90
Query: 219 RCGRPQTLSGISPARRLCATSSCSSA 142
G Q SG+ P LCATSSCSSA
Sbjct: 89 SRGSAQIPSGMCPVSSLCATSSCSSA 12
Score = 21.7 bits (41), Expect(2) = 8e-025
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1 / -3
Query: 595 IYESIINLLLRNKSYSIYHVYAFT 524
+Y SII +L K +VY +T
Sbjct: 400 VYNSIITILCCKKMTVYSYVYIYT 329
>gb|CA017100.1|CA017100 HV14M18u HV Hordeum vulgare subsp. vulgare cDNA clone HV14M18
3-PRIME, mRNA sequence
Length = 576
Score = 139 bits (298), Expect(2) = 8e-040
Identities = 50/97 (51%), Positives = 72/97 (74%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+++L+N+G++SC+P E+G L ++ V D+SF ++AG LP + M+ +EQ D+AHN L+
Sbjct: 181 LNEILLINNGLTSCLPAEVGMLREVTVFDVSFNALAGPLPPQVAGMQKVEQFDIAHNLLS 360
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVD 292
G +PE+VC LP LKNFT+SYNFF GEP C V D
Sbjct: 361 GTVPEAVCDLPRLKNFTFSYNFFTGEPPSCARVVPAD 471
Score = 44.1 bits (90), Expect(2) = 8e-040
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2 / +1
Query: 278 VPRVDDRQNCIAGRPDQRPGEECISFLHQPRVRCDAHGC 394
VP DR+NC+ RP QR ++C +F +P V C A C
Sbjct: 460 VPADGDRRNCLPDRPAQRMPQQCAAFYARPPVDCAAFQC 576
>gb|CA001848.1|CA001848 HS05M10r HS Hordeum vulgare subsp. vulgare cDNA clone HS05M10
5-PRIME, mRNA sequence
Length = 451
Score = 142 bits (304), Expect = 2e-033
Identities = 54/93 (58%), Positives = 71/93 (76%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+L+L+N+G+ SC+PPEIG+L +L VLD+S +AG L + +R LEQL+VAHN L+
Sbjct: 151 LNELLLINNGLKSCLPPEIGRLRELTVLDVSHNQLAGPLTQEVAGLRKLEQLNVAHNLLS 330
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEV 280
G IP++VC LP LKNFT+SYNFF GEP C V
Sbjct: 331 GPIPQAVCALPRLKNFTFSYNFFTGEPPACARV 429
>gb|BI947034.1|BI947034 HVSMEl0003F09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0003F09f, mRNA sequence
Length = 1107
Score = 116 bits (248), Expect = 1e-025
Identities = 41/87 (47%), Positives = 64/87 (73%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+++L+N+G++SC+P E+G L ++ V D+SF ++AG LP + M+ +E +D+AHN L+
Sbjct: 166 LNEILLINNGLTSCLPAEVGMLREVTVFDVSFNALAGPLPPQVAGMQKVEHVDIAHNLLS 345
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEP 262
G +PE+VC LP LK T+S NF G P
Sbjct: 346 GTVPEAVCHLPRLKKLTFSTNFSTGSP 426
>gb|CA007888.1|CA007888 HU09E19r HU Hordeum vulgare subsp. vulgare cDNA clone HU09E19
5-PRIME, mRNA sequence
Length = 516
Score = 91.3 bits (193), Expect(2) = 2e-025
Identities = 34/61 (55%), Positives = 42/61 (68%)
Frame = +2 / +1
Query: 110 GTLPDTIGNMRALEQLDVAHNRLAGEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRV 289
G LP + M+ +EQ D+AHN L+G +PE+VC LP LKNFT+SYNFF GEP C V
Sbjct: 10 GPLPPQVAGMQKVEQFDIAHNLLSGTVPEAVCDLPRLKNFTFSYNFFTGEPPSCARVVPA 189
Query: 290 D 292
D
Sbjct: 190 D 192
Score = 44.1 bits (90), Expect(2) = 2e-025
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2 / +1
Query: 278 VPRVDDRQNCIAGRPDQRPGEECISFLHQPRVRCDAHGC 394
VP DR+NC+ RP QR ++C +F +P V C A C
Sbjct: 181 VPADGDRRNCLPDRPAQRMPQQCAAFYARPPVDCAAFQC 297
>gb|BU970588.1|BU970588 HB15B14r BC Hordeum vulgare subsp. vulgare cDNA clone HB15B14
5-PRIME, mRNA sequence
Length = 508
Score = 107 bits (229), Expect = 5e-023
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +2 / +3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+L+++NSGI SCIP EIG L +L VLD+SF + GTLP+++ M ALEQLDVAHN L
Sbjct: 303 LNELLMINSGIRSCIPQEIGWLRELTVLDVSFNQLQGTLPESMAGMHALEQLDVAHNELT 482
Query: 182 GEIPESVC 205
G IPE +C
Sbjct: 483 GHIPEGIC 506
>gb|BU970614.1|BU970614 HB15C18r BC Hordeum vulgare subsp. vulgare cDNA clone HB15C18
5-PRIME, mRNA sequence
Length = 511
Score = 107 bits (229), Expect = 5e-023
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +2 / +3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+L+++NSGI SCIP EIG L +L VLD+SF + GTLP+++ M ALEQLDVAHN L
Sbjct: 303 LNELLMINSGIRSCIPQEIGWLRELTVLDVSFNQLQGTLPESMAGMHALEQLDVAHNELT 482
Query: 182 GEIPESVC 205
G IPE +C
Sbjct: 483 GHIPEGIC 506
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 223,684,815
Number of Sequences: 312970
Number of extensions: 3181971
Number of successful extensions: 81583
Number of sequences better than 1.0e-020: 15
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6956340276
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)