TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665451.2.1
(911 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF258539.2|BF258539 HVSMEf0016A04f Hordeum vulgare seedl... 62 8e-051
gb|BF255189.1|BF255189 HVSMEf0006D04f Hordeum vulgare seedl... 76 1e-049
gb|AL450842.1|AL450842 AL450842 Hordeum vulgare Barke etiol... 92 3e-047
gb|BQ763153.1|BQ763153 EBro02_SQ007_K08_R root, 3 week, hyd... 63 3e-046
gb|BF259210.2|BF259210 HVSMEf0018C22f Hordeum vulgare seedl... 144 8e-046
gb|BQ763720.1|BQ763720 EBro03_SQ005_A10_R root, 3 week, wat... 144 5e-045
gb|BF253803.2|BF253803 HVSMEf0002C17f Hordeum vulgare seedl... 62 1e-044
gb|BQ766637.1|BQ766637 EBro08_SQ006_N18_R root, 3 week, dro... 63 3e-037
gb|BF622296.2|BF622296 HVSMEa0002K01f Hordeum vulgare seedl... 72 9e-037
gb|BM442923.2|BM442923 EBro02_SQ001_N17_R root, 3 week, hyd... 61 2e-035
gb|BF259948.2|BF259948 HVSMEf0020L05f Hordeum vulgare seedl... 119 4e-035
gb|BM817225.1|BM817225 HC109B04_T3.ab1 HC Hordeum vulgare s... 53 2e-033
gb|BF253797.2|BF253797 HVSMEf0002C11f Hordeum vulgare seedl... 57 7e-033
gb|BI777370.2|BI777370 EBro04_SQ001_A06_R root, 3 week, sal... 63 2e-031
gb|BF631562.2|BF631562 HVSMEb0016G15f Hordeum vulgare seedl... 58 7e-029
gb|BF622265.2|BF622265 HVSMEa0002G13f Hordeum vulgare seedl... 52 7e-029
gb|BF264380.2|BF264380 HV_CEa0009E08f Hordeum vulgare seedl... 73 2e-028
gb|BQ762933.1|BQ762933 EBro02_SQ006_H16 _R root, 3 week, hy... 51 3e-028
gb|CA013731.1|CA013731 HT09F05r HT Hordeum vulgare subsp. v... 47 5e-028
gb|BJ544235.1|BJ544235 BJ544235 K. Sato unpublished cDNA li... 47 5e-028
gb|BM816911.1|BM816911 HB106C10_SK.ab1 HB Hordeum vulgare s... 55 1e-027
gb|BJ544573.1|BJ544573 BJ544573 K. Sato unpublished cDNA li... 47 2e-027
gb|BG299457.1|BG299457 HVSMEa0020C09f Hordeum vulgare seedl... 60 3e-027
gb|BF258410.2|BF258410 HVSMEf0015K10f Hordeum vulgare seedl... 101 3e-027
gb|BF621473.2|BF621473 HVSMEa0011B16f Hordeum vulgare seedl... 55 1e-026
gb|BF065184.1|BF065184 HV_CEb0023O18f Hordeum vulgare seedl... 55 1e-026
gb|AV908971.1|AV908971 AV908971 K. Sato unpublished cDNA li... 47 3e-026
gb|BF625550.2|BF625550 HVSMEa0011E08f Hordeum vulgare seedl... 44 3e-026
gb|AL504140.1|AL504140 AL504140 Hordeum vulgare Barke roots... 76 4e-026
gb|BF625649.2|BF625649 HVSMEa0013B21f Hordeum vulgare seedl... 116 1e-025
gb|BF620788.2|BF620788 HVSMEc0020N16f Hordeum vulgare seedl... 116 1e-025
gb|BE558770.2|BE558770 HV_CEb0020E13f Hordeum vulgare seedl... 116 1e-025
gb|BI959586.1|BI959586 HVSMEn0020E21f Hordeum vulgare rachi... 116 1e-025
gb|BE196654.3|BE196654 HVSMEh0092O09f Hordeum vulgare 5-45 ... 116 1e-025
gb|BQ460114.1|BQ460114 HA07C20r HA Hordeum vulgare subsp. v... 116 1e-025
gb|BQ467510.1|BQ467510 HS04A05r HS Hordeum vulgare subsp. v... 116 1e-025
gb|BQ467646.1|BQ467646 HS04G23r HS Hordeum vulgare subsp. v... 116 1e-025
gb|BI776549.2|BI776549 EBpi05_SQ001_N14_R pistil, 8 DPA, no... 116 1e-025
gb|BQ765092.1|BQ765092 EBca01_SQ005_D19_R carpel, pre-anthe... 116 1e-025
gb|CA001613.1|CA001613 HS05B06r HS Hordeum vulgare subsp. v... 116 1e-025
gb|CA001781.1|CA001781 HS05J03r HS Hordeum vulgare subsp. v... 116 1e-025
gb|CA012182.1|CA012182 HT04L19r HT Hordeum vulgare subsp. v... 116 1e-025
gb|CA023217.1|CA023217 HZ45J07r HZ Hordeum vulgare subsp. v... 116 1e-025
gb|CA024893.1|CA024893 HZ50K02r HZ Hordeum vulgare subsp. v... 116 1e-025
gb|CA028145.1|CA028145 HZ61C04r HZ Hordeum vulgare subsp. v... 116 1e-025
gb|CA029484.1|CA029484 HZ65F17r HZ Hordeum vulgare subsp. v... 116 1e-025
gb|CK122333.1|CK122333 BES1824102o06 BES1824 Hordeum vulgar... 116 1e-025
gb|AF109194.1|AF109194 Hordeum vulgare glutathione-S-transf... 116 1e-025
gb|BQ467879.1|BQ467879 HR01D11r HR Hordeum vulgare subsp. v... 53 2e-025
gb|BJ471554.1|BJ471554 BJ471554 K. Sato unpublished cDNA li... 116 2e-025
gb|BF619363.2|BF619363 HVSMEc0016M05f Hordeum vulgare seedl... 116 2e-025
gb|BM369749.2|BM369749 EBem07_SQ004_H24_R embryo, 28 DPA, n... 115 3e-025
gb|BE195630.3|BE195630 HVSMEh0089P24f Hordeum vulgare 5-45 ... 44 5e-025
gb|CA011829.1|CA011829 HT03K17r HT Hordeum vulgare subsp. v... 47 7e-025
gb|BF619549.2|BF619549 HVSMEc0004A15f Hordeum vulgare seedl... 114 9e-025
gb|AV932609.1|AV932609 AV932609 K. Sato unpublished cDNA li... 114 9e-025
gb|BQ464763.1|BQ464763 HU01G03T HU Hordeum vulgare subsp. v... 112 3e-024
gb|CA004080.1|CA004080 HS16H17r HS Hordeum vulgare subsp. v... 112 3e-024
gb|CA013624.1|CA013624 HT09A14r HT Hordeum vulgare subsp. v... 112 3e-024
gb|CA014093.1|CA014093 HT10F20r HT Hordeum vulgare subsp. v... 112 3e-024
gb|CA014271.1|CA014271 HT10O05r HT Hordeum vulgare subsp. v... 112 3e-024
gb|CA014392.1|CA014392 HT11D14r HT Hordeum vulgare subsp. v... 112 3e-024
gb|CA015258.1|CA015258 HT13M04r HT Hordeum vulgare subsp. v... 112 3e-024
gb|CA015289.1|CA015289 HT13N17r HT Hordeum vulgare subsp. v... 112 3e-024
gb|CA015381.1|CA015381 HT14C07r HT Hordeum vulgare subsp. v... 112 3e-024
gb|CA015590.1|CA015590 HT14M12r HT Hordeum vulgare subsp. v... 112 3e-024
gb|BE214950.1|BE214950 HV_CEb0005F03f Hordeum vulgare seedl... 47 3e-024
gb|BF624808.3|BF624808 HVSMEa0017M20f Hordeum vulgare seedl... 55 3e-024
gb|BF257083.2|BF257083 HVSMEf0011M23f Hordeum vulgare seedl... 55 3e-024
gb|BF265689.1|BF265689 HV_CEa0013B06f Hordeum vulgare seedl... 111 4e-024
gb|BI948705.1|BI948705 HVSMEl0010J03f Hordeum vulgare spike... 111 6e-024
gb|BF623684.2|BF623684 HVSMEa0003M02f Hordeum vulgare seedl... 110 1e-023
gb|CA027026.1|CA027026 HZ57K21r HZ Hordeum vulgare subsp. v... 110 1e-023
gb|BE421272.1|BE421272 HWM007.F01 ITEC HWM Barley Leaf Libr... 49 2e-023
gb|BM369733.2|BM369733 EBem07_SQ004_H07_R embryo, 28 DPA, n... 49 2e-023
gb|AV913623.1|AV913623 AV913623 K. Sato unpublished cDNA li... 46 3e-023
gb|BI949974.1|BI949974 HVSMEl0017G12f Hordeum vulgare spike... 108 5e-023
gb|BI950533.1|BI950533 HVSMEl0021D14f Hordeum vulgare spike... 46 1e-022
gb|AV834582.1|AV834582 AV834582 K. Sato unpublished cDNA li... 69 2e-022
gb|BE196145.3|BE196145 HVSMEh0091H19f Hordeum vulgare 5-45 ... 105 4e-022
gb|BQ465287.1|BQ465287 HU03D01r HU Hordeum vulgare subsp. v... 48 6e-022
gb|CA012539.1|CA012539 HT05L11r HT Hordeum vulgare subsp. v... 48 6e-022
gb|BF255868.2|BF255868 HVSMEf0008A20f Hordeum vulgare seedl... 74 6e-022
gb|BF260845.2|BF260845 HVSMEf0023B13f Hordeum vulgare seedl... 82 1e-021
gb|BQ471126.1|BQ471126 HV01D06T HV Hordeum vulgare subsp. v... 46 3e-021
gb|BF268066.2|BF268066 HV_CEa0019M05f Hordeum vulgare seedl... 102 3e-021
gb|CA025920.1|CA025920 HZ53I14r HZ Hordeum vulgare subsp. v... 101 5e-021
gb|BG368894.1|BG368894 HVSMEi0021D06f Hordeum vulgare 20 DA... 84 8e-021
gb|BF622298.2|BF622298 HVSMEa0002K03f Hordeum vulgare seedl... 64 8e-021
gb|BG299389.1|BG299389 HVSMEa0019L19f Hordeum vulgare seedl... 84 8e-021
>gb|BF258539.2|BF258539 HVSMEf0016A04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016A04f, mRNA sequence
Length = 854
Score = 62.5 bits (130), Expect(7) = 8e-051
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +3 / +1
Query: 261 GPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
GPPLLP DP ARA ARFWA F+E + KP ++A+W
Sbjct: 256 GPPLLPVDPLARANARFWARFLEEKFKKPLWIALW 360
Score = 52.4 bits (108), Expect(7) = 8e-051
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +3 / +1
Query: 498 ALGPWRSVIEELNGVALLSEDDHPNLCRW 584
AL W V+EE+ GV LL+E+DHP LCRW
Sbjct: 496 ALAHWMGVVEEMAGVRLLTEEDHPTLCRW 582
Score = 52.4 bits (108), Expect(7) = 8e-051
Identities = 23/40 (57%), Positives = 25/40 (62%)
Frame = +2 / +3
Query: 8 RHVVSAAGEADRLLRQPVRVPRGGGAVPERRAVRADPGGP 127
R V AGEA R LRQP R PRG G P+ R +RA GGP
Sbjct: 6 RRDVVGAGEAHRRLRQPGRAPRGAGPAPQGRPLRAHRGGP 125
Score = 51.5 bits (106), Expect(7) = 8e-051
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +3 / +1
Query: 114 ILEDLFGSKSELLLHHNPVHKKVPVLLHG 200
++E+ +KSELLL HNPVHK VPVLLHG
Sbjct: 109 LIEEDLNNKSELLLTHNPVHKTVPVLLHG 195
Score = 36.8 bits (74), Expect(7) = 8e-051
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 207 RAISESLVIAEYVDEAFDGPPLL 275
R+I +SLVI EY+DEAF G P L
Sbjct: 199 RSIPDSLVIVEYIDEAFPGGPPL 267
Score = 31.3 bits (62), Expect(7) = 8e-051
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / +1
Query: 444 GKRFFAGDRPGYLDVA 491
GKRFF GD G+LD+A
Sbjct: 439 GKRFFGGDTIGFLDIA 486
Score = 22.1 bits (42), Expect(7) = 8e-051
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = +3 / +3
Query: 594 YCAFEALKPCMPDREKL 644
Y E ++ C+PDR+++
Sbjct: 591 YRTNETVRKCLPDRDRV 641
>gb|BF255189.1|BF255189 HVSMEf0006D04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006D04f, mRNA sequence
Length = 617
Score = 76.2 bits (160), Expect(6) = 1e-049
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = +3 / -2
Query: 498 ALGPWRSVIEELNGVALLSEDDHPNLCRWTRDYCAFEALKPCMPDREKLLAYFTKNFDRY 677
AL W V+EE+ GV LL+E+DHP LCRW Y E ++ C+PDR+++LA D Y
Sbjct: 193 ALAHWMGVVEEMAGVRLLTEEDHPTLCRWASAYRTNETVRQCLPDRDRVLAALAARKDLY 14
Score = 53.8 bits (111), Expect(6) = 1e-049
Identities = 24/42 (57%), Positives = 26/42 (61%)
Frame = +2 / -1
Query: 2 QGRHVVSAAGEADRLLRQPVRVPRGGGAVPERRAVRADPGGP 127
Q R V AGEA R LRQP R PRG G P+ R +RA GGP
Sbjct: 599 QRRRDVVGAGEAHRRLRQPGRAPRGAGPAPQGRPLRAHRGGP 474
Score = 46.0 bits (94), Expect(6) = 1e-049
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3 / -2
Query: 261 GPPLLPADPYARAAARFWADFI 326
GPPLLP DP ARA ARFWA F+
Sbjct: 343 GPPLLPVDPLARANARFWARFL 278
Score = 44.1 bits (90), Expect(6) = 1e-049
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +3 / -2
Query: 114 ILEDLFGSKSELLLHHNPVHKKVPVLLHG 200
++E+ +KSELLL HN VHK V VLLHG
Sbjct: 490 LIEEDLNNKSELLLTHNTVHKTVTVLLHG 404
Score = 36.8 bits (74), Expect(6) = 1e-049
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +3 / -2
Query: 207 RAISESLVIAEYVDEAFDGPPLL 275
R+I +SLVI EY+DEAF G P L
Sbjct: 400 RSIPDSLVIVEYIDEAFPGGPPL 332
Score = 31.3 bits (62), Expect(6) = 1e-049
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / -2
Query: 444 GKRFFAGDRPGYLDVA 491
GKRFF GD G+LD+A
Sbjct: 250 GKRFFGGDAIGFLDIA 203
>gb|AL450842.1|AL450842 AL450842 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04H17u 5', mRNA sequence
Length = 700
Score = 91.8 bits (194), Expect(4) = 3e-047
Identities = 35/52 (67%), Positives = 44/52 (84%)
Frame = +3 / +3
Query: 207 RAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRLTKPFFMAI 362
RAI ESL+I EYVDEAFDGP LLP+DPY RA ARFWA F+E + ++PF++A+
Sbjct: 207 RAICESLLIMEYVDEAFDGPALLPSDPYDRAMARFWAQFLEQKCSRPFWLAL 362
Score = 63.8 bits (133), Expect(4) = 3e-047
Identities = 28/45 (62%), Positives = 31/45 (68%)
Frame = +3 / +3
Query: 27 PVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHH 161
PVKLI GSP+ R EAAL LKGVPYEL+LEDL LL H+
Sbjct: 33 PVKLIATLGSPFVHRVEAALRLKGVPYELVLEDLQSKSDLLLKHN 167
Score = 50.6 bits (104), Expect(4) = 3e-047
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +3 / +3
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDD 563
GKRFF GD GYLDVAA W EE+ GV+L+ +++
Sbjct: 444 GKRFFGGDSIGYLDVAACGPAHWIYAFEEVTGVSLMGDEN 563
Score = 39.1 bits (79), Expect(4) = 3e-047
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3 / +1
Query: 606 EALKPCMPDREKLLAYFTKNFDRYKAAVNA 695
E +K C+P +E+LLA F N D+YK V A
Sbjct: 610 ETVKECLPAKEQLLAIFAANKDKYKIIVKA 699
>gb|BQ763153.1|BQ763153 EBro02_SQ007_K08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_K08 5', mRNA sequence
Length = 614
Score = 62.9 bits (131), Expect(6) = 3e-046
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3 / +3
Query: 261 GPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
GPPLLP+DP ARA ARFWA F+E + KP ++A+W
Sbjct: 249 GPPLLPSDPLARANARFWARFLEEKFKKPLWIALW 353
Score = 50.1 bits (103), Expect(6) = 3e-046
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = +2 / +2
Query: 26 AGEADRLLRQPVRVPRGGGAVPERRAVRADPGGP 127
AGEA RLLRQP R PRG G P+ R +RA P P
Sbjct: 17 AGEAHRLLRQPGRAPRGAGPAPQGRPLRAHPRRP 118
Score = 48.3 bits (99), Expect(6) = 3e-046
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3 / +3
Query: 135 SKSELLLHHNPVHKKVPVLLHG 200
+KSELLL HNPVHK VPVLLHG
Sbjct: 123 NKSELLLTHNPVHKTVPVLLHG 188
Score = 47.8 bits (98), Expect(6) = 3e-046
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +3 / +2
Query: 519 VIEELNGVALLSEDDHPNLCRWTRDYCAFEALK 617
V+EE+ GV LL+E+DHP LCRW Y E ++
Sbjct: 512 VVEEMAGVRLLTEEDHPTLCRWASAYRTNETVR 610
Score = 35.9 bits (72), Expect(6) = 3e-046
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +3 / +3
Query: 207 RAISESLVIAEYVDEAFDGPPLL 275
R+I ESLVI EYVDEAF P L
Sbjct: 192 RSIPESLVIVEYVDEAFPAGPPL 260
Score = 31.3 bits (62), Expect(6) = 3e-046
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / +1
Query: 444 GKRFFAGDRPGYLDVA 491
GKRFF GD G+LD+A
Sbjct: 433 GKRFFGGDAIGFLDIA 480
>gb|BF259210.2|BF259210 HVSMEf0018C22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0018C22f, mRNA sequence
Length = 719
Score = 144 bits (308), Expect(3) = 8e-046
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +3 / +3
Query: 135 SKSELLLHHNPVHKKVPVLLHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFW 314
+KSELLL HNP+HK VPVLLHGD A+ ESL+I EYVDEAFDGPPLLP D Y RA ARFW
Sbjct: 120 NKSELLLKHNPIHKTVPVLLHGDRPAVLESLLIVEYVDEAFDGPPLLPVDTYGRAMARFW 299
Query: 315 ADFIETRLTKPFFMAIWV 368
A FIE + ++PF+MA+W+
Sbjct: 300 AQFIEQKCSRPFWMAVWM 353
Score = 40.5 bits (82), Expect(3) = 8e-046
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +3 / +3
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEEL 533
GKRFFAGD GYLD+AA L VIE++
Sbjct: 429 GKRFFAGDAVGYLDLAACGLLHLLGVIEDV 518
Score = 38.2 bits (77), Expect(3) = 8e-046
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = +2 / +2
Query: 29 GEADRLLRQPVRVPRGGGAVPERRAVRADPGGP 127
GEA R LRQPV PR GG P+ R + A P P
Sbjct: 17 GEAHRRLRQPVCPPR*GGPAPQGRPI*AHP*RP 115
>gb|BQ763720.1|BQ763720 EBro03_SQ005_A10_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_A10 5', mRNA sequence
Length = 549
Score = 144 bits (308), Expect(3) = 5e-045
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +3 / +1
Query: 135 SKSELLLHHNPVHKKVPVLLHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFW 314
+KSELLL HNP+HK VPVLLHGD A+ ESL+I EYVDEAFDGPPLLP D Y RA ARFW
Sbjct: 160 NKSELLLKHNPIHKTVPVLLHGDRPAVLESLLIVEYVDEAFDGPPLLPVDTYGRAMARFW 339
Query: 315 ADFIETRLTKPFFMAIWV 368
A FIE + ++PF+MA+W+
Sbjct: 340 AQFIEQKCSRPFWMAVWM 393
Score = 38.2 bits (77), Expect(3) = 5e-045
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = +2 / +3
Query: 29 GEADRLLRQPVRVPRGGGAVPERRAVRADPGGP 127
GEA R LRQPV PR GG P+ R + A P P
Sbjct: 57 GEAHRRLRQPVCPPR*GGPAPQGRPI*AHP*RP 155
Score = 37.7 bits (76), Expect(3) = 5e-045
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +3 / +2
Query: 444 GKRFFAGDRPGYLDVAASAL 503
GKRFFAGD GYLD+AA L
Sbjct: 470 GKRFFAGDAVGYLDLAACGL 529
>gb|BF253803.2|BF253803 HVSMEf0002C17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002C17f, mRNA sequence
Length = 809
Score = 62.5 bits (130), Expect(6) = 1e-044
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +3 / +2
Query: 261 GPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
GPPLLP DP ARA ARFWA F+E + KP ++A+W
Sbjct: 275 GPPLLPVDPLARANARFWARFLEEKFKKPLWIALW 379
Score = 53.8 bits (111), Expect(6) = 1e-044
Identities = 24/42 (57%), Positives = 26/42 (61%)
Frame = +2 / +1
Query: 2 QGRHVVSAAGEADRLLRQPVRVPRGGGAVPERRAVRADPGGP 127
Q R V AGEA R LRQP R PRG G P+ R +RA GGP
Sbjct: 19 QRRRDVVGAGEAHRRLRQPGRAPRGAGPAPQGRPLRAHRGGP 144
Score = 51.0 bits (105), Expect(6) = 1e-044
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +3 / +2
Query: 114 ILEDLFGSKSELLLHHNPVHKKVPVLLHG 200
++E+ +KSELLL HNPVHK VPVLLHG
Sbjct: 128 LIEEDLDNKSELLLTHNPVHKTVPVLLHG 214
Score = 37.3 bits (75), Expect(6) = 1e-044
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3 / +2
Query: 498 ALGPWRSVIEELNGVALLSEDDHPNLCRWT 587
AL W V +E+N + LL+++DH L +WT
Sbjct: 515 ALAHWMGVDKEMNXIRLLTKEDHTTLNQWT 604
Score = 36.8 bits (74), Expect(6) = 1e-044
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +3 / +2
Query: 207 RAISESLVIAEYVDEAFDGPPLL 275
R+I +SLVI EY+DEAF G P L
Sbjct: 218 RSIPDSLVIVEYIDEAFPGGPPL 286
Score = 29.5 bits (58), Expect(6) = 1e-044
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3 / +2
Query: 444 GKRFFAGDRPGYLDV 488
GKRFF GD G+LD+
Sbjct: 458 GKRFFGGDAIGFLDI 502
>gb|BQ766637.1|BQ766637 EBro08_SQ006_N18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_N18 5', mRNA sequence
Length = 504
Score = 62.9 bits (131), Expect(5) = 3e-037
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3 / +3
Query: 261 GPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
GPPLLP+DP ARA ARFWA F+E + KP ++A+W
Sbjct: 243 GPPLLPSDPLARANARFWARFLEEKFKKPLWIALW 347
Score = 50.1 bits (103), Expect(5) = 3e-037
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = +2 / +2
Query: 26 AGEADRLLRQPVRVPRGGGAVPERRAVRADPGGP 127
AGEA RLLRQP R PRG G P+ R +RA P P
Sbjct: 11 AGEAHRLLRQPGRAPRGAGPAPQGRPLRAHPRRP 112
Score = 48.3 bits (99), Expect(5) = 3e-037
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3 / +3
Query: 135 SKSELLLHHNPVHKKVPVLLHG 200
+KSELLL HNPVHK VPVLLHG
Sbjct: 117 NKSELLLTHNPVHKTVPVLLHG 182
Score = 35.9 bits (72), Expect(5) = 3e-037
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +3 / +3
Query: 207 RAISESLVIAEYVDEAFDGPPLL 275
R+I ESLVI EYVDEAF P L
Sbjct: 186 RSIPESLVIVEYVDEAFPAGPPL 254
Score = 31.3 bits (62), Expect(5) = 3e-037
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / +3
Query: 444 GKRFFAGDRPGYLDVA 491
GKRFF GD G+LD+A
Sbjct: 426 GKRFFGGDAIGFLDIA 473
>gb|BF622296.2|BF622296 HVSMEa0002K01f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002K01f, mRNA sequence
Length = 700
Score = 71.6 bits (150), Expect(3) = 9e-037
Identities = 25/63 (39%), Positives = 41/63 (65%)
Frame = +3 / +2
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDDHPNLCRWTRDYCAFEALKPC 623
GKRFF G+ G++D+AA L W V+ E+ GV L+ + ++P L RW ++Y + E ++
Sbjct: 512 GKRFFGGEALGFVDLAACTLAHWLGVLGEVGGVRLMEDGEYPALRRWAKEYTSHEVVRRA 691
Query: 624 MPD 632
+PD
Sbjct: 692 LPD 700
Score = 64.3 bits (134), Expect(3) = 9e-037
Identities = 27/45 (60%), Positives = 32/45 (71%)
Frame = +3 / +2
Query: 27 PVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHH 161
PV+LI FGSP+A R E AL LKGVPYEL++EDL LL H+
Sbjct: 86 PVRLITAFGSPFAHRVEVALTLKGVPYELLVEDLASKSDLLLAHN 220
Score = 56.1 bits (116), Expect(3) = 9e-037
Identities = 24/55 (43%), Positives = 31/55 (56%)
Frame = +3 / +2
Query: 201 DGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
D I E + A + D+ LLPADPY RA ARFWADF+ + KP + + W
Sbjct: 272 DSLVIVEYVDEAFHDDDGTAPRRLLPADPYDRATARFWADFVANKCLKPLWQSTW 436
>gb|BM442923.2|BM442923 EBro02_SQ001_N17_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_N17 5', mRNA sequence
Length = 440
Score = 61.1 bits (127), Expect(4) = 2e-035
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +3 / +1
Query: 261 GPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
GPPLLP DP ARA ARFWA F+E KP ++A+W
Sbjct: 277 GPPLLPVDPLARANARFWARFLEEECKKPLWIALW 381
Score = 55.6 bits (115), Expect(4) = 2e-035
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = +2 / +3
Query: 2 QGRHVVSAAGEADRLLRQPVRVPRGGGAVPERRAVRADPGGP 127
Q R V AAGEA R LRQP R PRG G P+ R +RA GGP
Sbjct: 21 QRRRDVVAAGEAHRRLRQPGRAPRGAGPAPQGRPLRAHRGGP 146
Score = 51.5 bits (106), Expect(4) = 2e-035
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +3 / +1
Query: 114 ILEDLFGSKSELLLHHNPVHKKVPVLLHG 200
++E+ +KSELLL HNPVHK VPVLLHG
Sbjct: 130 LIEEDLNNKSELLLTHNPVHKTVPVLLHG 216
Score = 36.8 bits (74), Expect(4) = 2e-035
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 207 RAISESLVIAEYVDEAFDGPPLL 275
R+I +SLVI EY+DEAF G P L
Sbjct: 220 RSIPDSLVIVEYIDEAFPGGPPL 288
>gb|BF259948.2|BF259948 HVSMEf0020L05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020L05f, mRNA sequence
Length = 845
Score = 119 bits (254), Expect(2) = 4e-035
Identities = 45/78 (57%), Positives = 57/78 (73%)
Frame = +3 / +1
Query: 135 SKSELLLHHNPVHKKVPVLLHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFW 314
+K+ + HNP+HK VPVL HGD + ESL+I EYVDEAFDGPP+L D Y A ARFW
Sbjct: 109 TKASCSVKHNPIHKTVPVL*HGDRPGVLESLLIVEYVDEAFDGPPVLSVDTYGTAMARFW 288
Query: 315 ADFIETRLTKPFFMAIWV 368
A FIE + + PF+MA+W+
Sbjct: 289 AQFIEQKCSMPFWMAVWM 342
Score = 49.2 bits (101), Expect(2) = 4e-035
Identities = 23/34 (67%), Positives = 24/34 (70%)
Frame = +3 / +3
Query: 27 PVKLIGFFGSPYAFRAEAALCLKGVPYELILEDL 128
PVKLIG F SP RA+ AL LKG P LILEDL
Sbjct: 3 PVKLIGAFSSPSVHRADVALRLKGAPC*LILEDL 104
>gb|BM817225.1|BM817225 HC109B04_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109B04_T3.ab1 similar to Glutathione
transferase,Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 897
Score = 52.8 bits (109), Expect(5) = 2e-033
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +3 / +2
Query: 261 GPPLLPADPYARAAARFWADFIETRLTKPF 350
GP LLPADPY RA ARFWA ++E +L P+
Sbjct: 347 GPSLLPADPYERAVARFWAAYVEDKLLPPW 436
Score = 44.1 bits (90), Expect(5) = 2e-033
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3 / +2
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDDHPNLCRW 584
GK FF GD GY+DV ++ PW E+L+G + P L W
Sbjct: 542 GKGFFGGDCVGYVDVLLGSIVPWVRATEKLSGDRVFDAGKAPLLAAW 682
Score = 43.7 bits (89), Expect(5) = 2e-033
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +3 / +2
Query: 30 VKLIGFFGSPYAFRAEAALCLKGVPYELILEDL 128
VKL+G + SP+ RA+ AL LKGV YE + E+L
Sbjct: 116 VKLLGMWASPFVVRAQLALRLKGVNYEYVEEEL 214
Score = 40.5 bits (82), Expect(5) = 2e-033
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3 / +2
Query: 117 LEDLFGSKSELLLHHNPVHKKVPVLLH 197
+E+ +KS+L L NPVHK VPVL+H
Sbjct: 200 VEEELANKSDLFLRSNPVHKTVPVLIH 280
Score = 34.1 bits (68), Expect(5) = 2e-033
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3 / +2
Query: 177 KVPVLLHGDGRAISESLVIAEYVDEAFDG 263
K +L DG+ I ES VI +Y+DEAF G
Sbjct: 257 KTVPVLIHDGKPICESQVILQYIDEAFAG 343
>gb|BF253797.2|BF253797 HVSMEf0002C11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002C11f, mRNA sequence
Length = 824
Score = 56.5 bits (117), Expect(4) = 7e-033
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +3 / +2
Query: 261 GPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
GPPLLP DP RA AR WA F+E + KP ++A+W
Sbjct: 275 GPPLLPVDPLDRANARLWARFLEEKFKKPVWIALW 379
Score = 53.8 bits (111), Expect(4) = 7e-033
Identities = 24/42 (57%), Positives = 26/42 (61%)
Frame = +2 / +1
Query: 2 QGRHVVSAAGEADRLLRQPVRVPRGGGAVPERRAVRADPGGP 127
Q R V AGEA R LRQP R PRG G P+ R +RA GGP
Sbjct: 19 QRRRDVVGAGEAHRRLRQPGRAPRGAGPAPQGRPLRAHRGGP 144
Score = 51.0 bits (105), Expect(4) = 7e-033
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +3 / +2
Query: 114 ILEDLFGSKSELLLHHNPVHKKVPVLLHG 200
++E+ +KSELLL HNPVHK VPVLLHG
Sbjct: 128 LIEEDLDNKSELLLTHNPVHKTVPVLLHG 214
Score = 35.0 bits (70), Expect(4) = 7e-033
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3 / +2
Query: 207 RAISESLVIAEYVDEAFDGPPLL 275
R+I +SLVI +Y+DEAF G P L
Sbjct: 218 RSIPDSLVIVKYIDEAFPGGPPL 286
>gb|BI777370.2|BI777370 EBro04_SQ001_A06_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_A06 5', mRNA sequence
Length = 378
Score = 62.9 bits (131), Expect(4) = 2e-031
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3 / +3
Query: 261 GPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
GPPLLP+DP ARA ARFWA F+E + KP ++A+W
Sbjct: 258 GPPLLPSDPLARANARFWARFLEEKFKKPLWIALW 362
Score = 50.1 bits (103), Expect(4) = 2e-031
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = +2 / +3
Query: 26 AGEADRLLRQPVRVPRGGGAVPERRAVRADPGGP 127
AGEA RLLRQP R PRG G P+ R +RA P P
Sbjct: 27 AGEAHRLLRQPGRAPRGAGPAPQGRPLRAHPRRP 128
Score = 45.1 bits (92), Expect(4) = 2e-031
Identities = 20/30 (66%), Positives = 22/30 (73%)
Frame = +3 / +1
Query: 135 SKSELLLHHNPVHKKVPVLLHGDGRAISES 224
+KSELLL HN VHK VPVLLHG + S S
Sbjct: 133 NKSELLLTHNSVHKTVPVLLHGHPPSRSRS 222
Score = 33.6 bits (67), Expect(4) = 2e-031
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +3 / +3
Query: 210 AISESLVIAEYVDEAFDGPPLL 275
+I ESLVI EYVDEAF P L
Sbjct: 204 SIPESLVIVEYVDEAFPAGPPL 269
>gb|BF631562.2|BF631562 HVSMEb0016G15f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0016G15f, mRNA sequence
Length = 830
Score = 57.9 bits (120), Expect(4) = 7e-029
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +3 / +1
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDDHPNLCRWTRDYCAFEALKPC 623
GK FF GD GY+DV L PW +++ GV P L W + + A++
Sbjct: 475 GKPFFGGDTAGYVDVMLGGLLPWVHTSDKMKGVKTFDPATTPLLAAWADSFXSLGAVEAV 654
Query: 624 MPDREKLLAY 653
MPD KL+ +
Sbjct: 655 MPDVSKLIEF 684
Score = 45.5 bits (93), Expect(4) = 7e-029
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +1
Query: 30 VKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELL 152
VKL+G + SP+ R + AL LKGV YE + EDL LL
Sbjct: 49 VKLLGMWASPFVLRIKLALSLKGVAYEYVEEDLKSKSELLL 171
Score = 43.7 bits (89), Expect(4) = 7e-029
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3 / +1
Query: 261 GPPLLPADPYARAAARFWADFIETRLTK 344
GP LLP +P+ RA ARFWA +I+ L K
Sbjct: 280 GPSLLPEEPHGRAVARFWAAYIDGTLVK 363
Score = 35.4 bits (71), Expect(4) = 7e-029
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3 / +1
Query: 201 DGRAISESLVIAEYVDEAFDG 263
DG+ +SES VI +Y+DEAF G
Sbjct: 214 DGKPVSESSVILQYIDEAFAG 276
>gb|BF622265.2|BF622265 HVSMEa0002G13f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002G13f, mRNA sequence
Length = 698
Score = 52.4 bits (108), Expect(4) = 7e-029
Identities = 25/73 (34%), Positives = 34/73 (46%)
Frame = +3 / +3
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDDHPNLCRWTRDYCAFEALKPC 623
GK FFAGD GYLD+A W ++ GV L P L W + + +A K
Sbjct: 468 GKAFFAGDSVGYLDLAVGCHLHWLKAQRKMFGVVFLEAGRTPLLTGWAKRFAETDAGKEV 647
Query: 624 MPDREKLLAYFTK 662
+PD + + Y K
Sbjct: 648 VPDTDVGMEYAKK 686
Score = 44.1 bits (90), Expect(4) = 7e-029
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3 / +3
Query: 261 GPPLLPADPYARAAARFWADFIETRL 338
GP +LP DPY RAA+RFWA + + +L
Sbjct: 273 GPSILPVDPYDRAASRFWAAYADDKL 350
Score = 43.7 bits (89), Expect(4) = 7e-029
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +3 / +3
Query: 3 KVDMSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELL 152
K M++ +KL+G SP+ R AL +KG+ YE I +DLF LL
Sbjct: 15 KTAMAAEGDLKLLGLSVSPFVVRVRMALHMKGLSYEYIEQDLFNKSELLL 164
Score = 42.3 bits (86), Expect(4) = 7e-029
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +3 / +3
Query: 135 SKSELLLHHNPVHKKVPVLLHGDGRAISESLVI 233
+KSELLL NPV KKVPVL+H + S ++
Sbjct: 144 NKSELLLKSNPVEKKVPVLIHDGKTILDSSAIV 242
>gb|BF264380.2|BF264380 HV_CEa0009E08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009E08f, mRNA sequence
Length = 848
Score = 73.0 bits (153), Expect(3) = 2e-028
Identities = 33/68 (48%), Positives = 42/68 (61%)
Frame = +3 / +3
Query: 30 VKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVLLHGDGR 209
+KL+GF+ SP+ RA AL LKG+ E+ SKS+LLL NPVH KVPVLLHG
Sbjct: 39 LKLLGFWASPFVHRARVALHLKGITGYEYAEEDLTSKSDLLLASNPVHAKVPVLLHGGKP 218
Query: 210 AISESLVI 233
L++
Sbjct: 219 VCESMLIV 242
Score = 54.7 bits (113), Expect(3) = 2e-028
Identities = 24/63 (38%), Positives = 31/63 (49%)
Frame = +3 / +3
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDDHPNLCRWTRDYCAFEALKPC 623
GK FF GD PGY+D+A W + + GV LL P L W + A E+ K
Sbjct: 474 GKAFFGGDAPGYVDIALGGYVAWMRAFQAVGGVDLLDAARTPLLGAWAERFAAPESGKGG 653
Query: 624 MPD 632
MP+
Sbjct: 654 MPE 662
Score = 40.0 bits (81), Expect(3) = 2e-028
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3 / +3
Query: 261 GPPLLPADPYARAAARFWADFIE 329
GP LLP DP+ RA ARFWA + +
Sbjct: 279 GPALLPGDPHDRAVARFWAAYAD 347
>gb|BQ762933.1|BQ762933 EBro02_SQ006_H16 _R root, 3 week, hydroponic grown, low nitrogen,
cv Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA
clone EBro02_SQ006_H16 5', mRNA sequence
Length = 701
Score = 51.0 bits (105), Expect(5) = 3e-028
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +3 / +1
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDDHPNLCRWTRDYCAFEALKPC 623
GK FFAGD GYLD+ + W V+ ++ GV ++ P L W + + + K
Sbjct: 415 GKPFFAGDSVGYLDLVVGSQLLWFEVLRKMFGVVVIEACRAPFLAAWVKRFWETDTAKAV 594
Query: 624 MPDREKLLAYFTK 662
+PD Y K
Sbjct: 595 VPDVGTAAEYLKK 633
Score = 47.3 bits (97), Expect(5) = 3e-028
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3 / +1
Query: 252 AFDGPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
A G +LPADPY RAAARFWA + +++L + +W
Sbjct: 211 AATGTSILPADPYDRAAARFWAAYADSKLLPAWVGIMW 324
Score = 39.1 bits (79), Expect(5) = 3e-028
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +1
Query: 135 SKSELLLHHNPVHKKVPVLLH 197
+K ELLL NPVH KVPVL+H
Sbjct: 91 TKGELLLKSNPVHMKVPVLIH 153
Score = 30.4 bits (60), Expect(5) = 3e-028
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3 / +1
Query: 201 DGRAISESLVIAEYVDEAF 257
DG++I ESL I +YVDE +
Sbjct: 154 DGKSICESLAIVQYVDEVW 210
Score = 29.5 bits (58), Expect(5) = 3e-028
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3 / +1
Query: 54 SPYAFRAEAALCLKGVPYELILEDLFGSKSELL 152
SP+ R AL +K V YE + +DLF LL
Sbjct: 13 SPFVIRVRMALQMKRVGYEYMEQDLFTKGELLL 111
>gb|CA013731.1|CA013731 HT09F05r HT Hordeum vulgare subsp. vulgare cDNA clone HT09F05
5-PRIME, mRNA sequence
Length = 615
Score = 47.3 bits (97), Expect(5) = 5e-028
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3 / +3
Query: 252 AFDGPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
A G +LPADPY RAAARFWA + +++L + +W
Sbjct: 243 AATGTSILPADPYDRAAARFWAAYADSKLLPAWVGIMW 356
Score = 44.1 bits (90), Expect(5) = 5e-028
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3 / +3
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDDHPNLCRWTRDY 596
GK FFAGD GYLD+ + W V+ ++ GV ++ P L W + +
Sbjct: 447 GKPFFAGDSVGYLDLVVGSQLLWFEVLRKMFGVVVIEACRAPFLAAWVKRF 599
Score = 39.1 bits (79), Expect(5) = 5e-028
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +3
Query: 135 SKSELLLHHNPVHKKVPVLLH 197
+K ELLL NPVH KVPVL+H
Sbjct: 123 TKGELLLKSNPVHMKVPVLIH 185
Score = 35.4 bits (71), Expect(5) = 5e-028
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3 / +3
Query: 30 VKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELL 152
+KL+G SP+ R AL +K V YE + +DLF LL
Sbjct: 21 LKLLGLTVSPFVIRVRMALQMKRVGYEYMEQDLFTKGELLL 143
Score = 30.4 bits (60), Expect(5) = 5e-028
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3 / +3
Query: 201 DGRAISESLVIAEYVDEAF 257
DG++I ESL I +YVDE +
Sbjct: 186 DGKSICESLAIVQYVDEVW 242
>gb|BJ544235.1|BJ544235 BJ544235 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak22d17 5', mRNA sequence
Length = 606
Score = 47.3 bits (97), Expect(5) = 5e-028
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3 / +2
Query: 252 AFDGPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
A G +LPADPY RAAARFWA + +++L + +W
Sbjct: 236 AATGTSILPADPYDRAAARFWAAYADSKLLPAWVGIMW 349
Score = 44.1 bits (90), Expect(5) = 5e-028
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3 / +2
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDDHPNLCRWTRDY 596
GK FFAGD GYLD+ + W V+ ++ GV ++ P L W + +
Sbjct: 440 GKPFFAGDSVGYLDLVVGSQLLWFEVLRKMFGVVVIEACRAPFLAAWVKRF 592
Score = 39.1 bits (79), Expect(5) = 5e-028
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 135 SKSELLLHHNPVHKKVPVLLH 197
+K ELLL NPVH KVPVL+H
Sbjct: 116 TKGELLLKSNPVHMKVPVLIH 178
Score = 35.4 bits (71), Expect(5) = 5e-028
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3 / +2
Query: 30 VKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELL 152
+KL+G SP+ R AL +K V YE + +DLF LL
Sbjct: 14 LKLLGLTVSPFVIRVRMALQMKRVGYEYMEQDLFTKGELLL 136
Score = 30.4 bits (60), Expect(5) = 5e-028
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3 / +2
Query: 201 DGRAISESLVIAEYVDEAF 257
DG++I ESL I +YVDE +
Sbjct: 179 DGKSICESLAIVQYVDEVW 235
>gb|BM816911.1|BM816911 HB106C10_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB106C10_SK.ab1 similar to Glutathione
transferase,Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 924
Score = 55.1 bits (114), Expect(4) = 1e-027
Identities = 24/65 (36%), Positives = 32/65 (49%)
Frame = +3 / +2
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDDHPNLCRWTRDYCAFEALKPC 623
GK +F GD GYLD+A + W +E + + LL E P L W +CA A+
Sbjct: 524 GKDYFGGDGVGYLDIALGSHLGWIXAVERIAELRLLDEAKVPKLAAWADRFCAHPAVAGA 703
Query: 624 MPDRE 638
MP E
Sbjct: 704 MPGVE 718
Score = 47.8 bits (98), Expect(4) = 1e-027
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3 / +2
Query: 114 ILEDLFGSKSELLLHHNPVHKKVPVLLH 197
++E+ G+KSELLL NPVHK +PVLLH
Sbjct: 182 LVEEAMGNKSELLLASNPVHKMIPVLLH 265
Score = 45.5 bits (93), Expect(4) = 1e-027
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +3 / +2
Query: 264 PPLLPADPYARAAARFWADFIETR 335
P LLP+DPYARAA RFWA +++ +
Sbjct: 335 PALLPSDPYARAAERFWAQYVDDK 406
Score = 29.9 bits (59), Expect(4) = 1e-027
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3 / +2
Query: 204 GRAISESLVIAEYVDEAF 257
GR +SESL+I +YV EA+
Sbjct: 269 GRPVSESLIIVQYVHEAW 322
>gb|BJ544573.1|BJ544573 BJ544573 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31o05 5', mRNA sequence
Length = 605
Score = 47.3 bits (97), Expect(5) = 2e-027
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3 / +1
Query: 252 AFDGPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
A G +LPADPY RAAARFWA + +++L + +W
Sbjct: 217 AATGTSILPADPYDRAAARFWAAYADSKLLPAWVGIMW 330
Score = 44.6 bits (91), Expect(5) = 2e-027
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3 / +1
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDDHPNLCRWTRDYCAFEALK 617
GK FFAGD GYLD+ + W V+ ++ GV ++ P L W + + + K
Sbjct: 421 GKPFFAGDSVGYLDLVVGSQLLWFEVLRKMFGVVVIEACRAPFLAAWVKRFWETDTAK 594
Score = 39.1 bits (79), Expect(5) = 2e-027
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +1
Query: 135 SKSELLLHHNPVHKKVPVLLH 197
+K ELLL NPVH KVPVL+H
Sbjct: 97 TKGELLLKSNPVHMKVPVLIH 159
Score = 32.7 bits (65), Expect(5) = 2e-027
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3 / +1
Query: 36 LIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELL 152
L+G SP+ R AL +K V YE + +DLF LL
Sbjct: 1 LLGLTVSPFVIRVRMALHMKRVGYEYMEQDLFTKGELLL 117
Score = 30.4 bits (60), Expect(5) = 2e-027
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3 / +1
Query: 201 DGRAISESLVIAEYVDEAF 257
DG++I ESL I +YVDE +
Sbjct: 160 DGKSICESLAIVQYVDEVW 216
>gb|BG299457.1|BG299457 HVSMEa0020C09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0020C09f, mRNA sequence
Length = 612
Score = 59.7 bits (124), Expect(3) = 3e-027
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = +3 / -2
Query: 258 DGPPLLPADPYARAAARFWADFIETRLTKPFFMAIWV 368
DGP LLPADP RA ARFWA F + + ++PF++A+W+
Sbjct: 611 DGPHLLPADPSDRAMARFWAQFWDQQCSRPFWLALWL 501
Score = 51.5 bits (106), Expect(3) = 3e-027
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +3 / -2
Query: 555 EDDHPNLCRWTRDYCAFEALKPCMPDREKLLAYFTKNFDRYKAAVNATLSQ 707
E++ P L RW ++Y +K C+P RE+L+ +F+ N D+YK A L Q
Sbjct: 311 ENEFPALRRWGKEYTENVTVKECLPPREQLVGFFSANKDKYKMIA*AMLHQ 159
Score = 48.7 bits (100), Expect(3) = 3e-027
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3 / -2
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDD 563
GKRFF GD GY+DVAA W EE+ G++L+ +++
Sbjct: 425 GKRFFGGDSIGYVDVAACGPAHWMYAFEEVTGMSLMGDEN 306
>gb|BF258410.2|BF258410 HVSMEf0015K10f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0015K10f, mRNA sequence
Length = 607
Score = 101 bits (216), Expect(2) = 3e-027
Identities = 42/80 (52%), Positives = 57/80 (71%)
Frame = +3 / +3
Query: 30 VKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVLLHGDGR 209
VK++G + SP+A R AL LK + YE I + L+ KSELLL NPV+KK+PVL+HGD +
Sbjct: 36 VKVLGSWPSPFAMRPRIALNLKSLTYEYIDQKLWEGKSELLLQSNPVYKKIPVLIHGDNK 215
Query: 210 AISESLVIAEYVDEAFDGPP 269
I ESL+I +Y+DEA+ P
Sbjct: 216 PICESLIIVQYIDEAWSSGP 275
Score = 40.0 bits (81), Expect(2) = 3e-027
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3 / +3
Query: 261 GPPLLPADPYARAAARFWADFIETR 335
GP +LP+DP RA ARFWA +++ +
Sbjct: 270 GPSILPSDPCERAVARFWAAYLDDK 344
>gb|BF621473.2|BF621473 HVSMEa0011B16f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011B16f, mRNA sequence
Length = 848
Score = 54.7 bits (113), Expect(4) = 1e-026
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3 / +2
Query: 261 GPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
GP LLPADP+ RA ARFWA FIE L K A W
Sbjct: 329 GPALLPADPHERAVARFWAAFIEDTLVKAMNQASW 433
Score = 44.1 bits (90), Expect(4) = 1e-026
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +3 / +2
Query: 138 KSELLLHHNPVHKKVPVLLHG 200
KSELLL NPVH KVPVL+HG
Sbjct: 203 KSELLLRSNPVHNKVPVLIHG 265
Score = 42.8 bits (87), Expect(4) = 1e-026
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +3 / +2
Query: 30 VKLIGFFGSPYAFRAEAALCLKGVPYELILEDL 128
VKL+G + SPY R AL +KG+ YE EDL
Sbjct: 98 VKLLGMWASPYVLRVRLALSIKGIRYEYAEEDL 196
Score = 33.6 bits (67), Expect(4) = 1e-026
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3 / +2
Query: 204 GRAISESLVIAEYVDEAFDG 263
G+ + ESLVI +Y+DEAF G
Sbjct: 266 GKPVCESLVILQYIDEAFGG 325
>gb|BF065184.1|BF065184 HV_CEb0023O18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023O18f, mRNA sequence
Length = 577
Score = 54.7 bits (113), Expect(4) = 1e-026
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3 / +1
Query: 261 GPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
GP LLPADP+ RA ARFWA FIE L K A W
Sbjct: 340 GPALLPADPHERAVARFWAAFIEDTLVKAMNQASW 444
Score = 44.1 bits (90), Expect(4) = 1e-026
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +3 / +1
Query: 138 KSELLLHHNPVHKKVPVLLHG 200
KSELLL NPVH KVPVL+HG
Sbjct: 214 KSELLLRSNPVHNKVPVLIHG 276
Score = 42.8 bits (87), Expect(4) = 1e-026
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +3 / +1
Query: 30 VKLIGFFGSPYAFRAEAALCLKGVPYELILEDL 128
VKL+G + SPY R AL +KG+ YE EDL
Sbjct: 109 VKLLGMWASPYVLRVRLALSIKGIRYEYAEEDL 207
Score = 33.6 bits (67), Expect(4) = 1e-026
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3 / +1
Query: 204 GRAISESLVIAEYVDEAFDG 263
G+ + ESLVI +Y+DEAF G
Sbjct: 277 GKPVCESLVILQYIDEAFGG 336
>gb|AV908971.1|AV908971 AV908971 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11b21 5', mRNA sequence
Length = 552
Score = 47.3 bits (97), Expect(5) = 3e-026
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3 / +2
Query: 252 AFDGPPLLPADPYARAAARFWADFIETRLTKPFFMAIW 365
A G +LPADPY RAAARFWA + +++L + +W
Sbjct: 236 AATGTSILPADPYDRAAARFWAAYADSKLLPAWVGIMW 349
Score = 39.1 bits (79), Expect(5) = 3e-026
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 135 SKSELLLHHNPVHKKVPVLLH 197
+K ELLL NPVH KVPVL+H
Sbjct: 116 TKGELLLKSNPVHMKVPVLIH 178
Score = 38.2 bits (77), Expect(5) = 3e-026
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3 / +2
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALL 551
GK FFAGD GYLD+ + W V+ ++ GV ++
Sbjct: 440 GKPFFAGDSVGYLDLVVGSQLLWFEVLRKMFGVVVI 547
Score = 35.4 bits (71), Expect(5) = 3e-026
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3 / +2
Query: 30 VKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELL 152
+KL+G SP+ R AL +K V YE + +DLF LL
Sbjct: 14 LKLLGLTVSPFVIRVRMALQMKRVGYEYMEQDLFTKGELLL 136
Score = 30.4 bits (60), Expect(5) = 3e-026
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3 / +2
Query: 201 DGRAISESLVIAEYVDEAF 257
DG++I ESL I +YVDE +
Sbjct: 179 DGKSICESLAIVQYVDEVW 235
>gb|BF625550.2|BF625550 HVSMEa0011E08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011E08f, mRNA sequence
Length = 639
Score = 44.1 bits (90), Expect(4) = 3e-026
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3 / +1
Query: 261 GPPLLPADPYARAAARFWADFIETRL 338
GP +LP DPY RAA+RFWA + + +L
Sbjct: 286 GPSILPVDPYDRAASRFWAAYADDKL 363
Score = 43.7 bits (89), Expect(4) = 3e-026
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +3 / +1
Query: 3 KVDMSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELL 152
K M++ +KL+G SP+ R AL +KG+ YE I +DLF LL
Sbjct: 28 KTAMAAEGDLKLLGLSVSPFVVRVRMALHMKGLSYEYIEQDLFNKSELLL 177
Score = 43.2 bits (88), Expect(4) = 3e-026
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +3 / +1
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDDHPNLCRWTRDY 596
GK FFAGD GYLD+A W ++ GV L P L W + +
Sbjct: 481 GKAFFAGDSVGYLDLAVGCHLHWLKAQRKMFGVVFLEAGRTPLLAGWAKRF 633
Score = 42.3 bits (86), Expect(4) = 3e-026
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +3 / +1
Query: 135 SKSELLLHHNPVHKKVPVLLHGDGRAISESLVI 233
+KSELLL NPV KKVPVL+H + S ++
Sbjct: 157 NKSELLLKSNPVEKKVPVLIHDGKTILDSSAIV 255
>gb|AL504140.1|AL504140 AL504140 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04F05V 5', mRNA sequence
Length = 700
Score = 76.2 bits (160), Expect(3) = 4e-026
Identities = 33/74 (44%), Positives = 42/74 (56%)
Frame = +3 / +1
Query: 117 LEDLFGSKSELLLHHNPVHKKVPVLLHGDGRAISESLVIAEYVDEAFDGPPLLPADPYAR 296
LE K +LLL NPVH KVPVL+H ++ + DG LLPADPY R
Sbjct: 181 LEQDLFHKGDLLLASNPVHNKVPVLIHAGRPVCESLAIVEYVNEVWADGASLLPADPYGR 360
Query: 297 AAARFWADFIETRL 338
A ARFWA +++ +L
Sbjct: 361 AVARFWAAYVDDKL 402
Score = 48.7 bits (100), Expect(3) = 4e-026
Identities = 23/58 (39%), Positives = 28/58 (48%)
Frame = +3 / +1
Query: 444 GKRFFAGDRPGYLDVAASALGPWRSVIEELNGVALLSEDDHPNLCRWTRDYCAFEALK 617
GK FFAGD GYLD+A W + E+ GV L+ P L W + EA K
Sbjct: 520 GKDFFAGDSVGYLDLALGCNLFWFKALREMFGVTLIDAGRTPGLAAWAERFKQTEAGK 693
Score = 30.9 bits (61), Expect(3) = 4e-026
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2 / +3
Query: 32 EADRLLRQPVRVPRGGGAVPERRAVRADPGGPV 130
+A R +PVR PR GA + R +R GPV
Sbjct: 99 QATRFGDEPVRGPRAHGAARQGRQLRVPGAGPV 197
>gb|BF625649.2|BF625649 HVSMEa0013B21f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0013B21f, mRNA sequence
Length = 483
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +2
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 59 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 238
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 239 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 385
>gb|BF620788.2|BF620788 HVSMEc0020N16f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0020N16f, mRNA sequence
Length = 881
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +2
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 62 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 241
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 242 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 388
>gb|BE558770.2|BE558770 HV_CEb0020E13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020E13f, mRNA sequence
Length = 806
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +1
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 52 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 231
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 232 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 378
>gb|BI959586.1|BI959586 HVSMEn0020E21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020E21f, mRNA sequence
Length = 659
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +3
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 60 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 239
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 240 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 386
>gb|BE196654.3|BE196654 HVSMEh0092O09f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092O09f, mRNA sequence
Length = 943
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +3
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 63 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 242
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 243 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 389
>gb|BQ460114.1|BQ460114 HA07C20r HA Hordeum vulgare subsp. vulgare cDNA clone HA07C20
5-PRIME, mRNA sequence
Length = 554
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +3
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 69 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 248
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 249 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 395
>gb|BQ467510.1|BQ467510 HS04A05r HS Hordeum vulgare subsp. vulgare cDNA clone HS04A05
5-PRIME, mRNA sequence
Length = 496
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +2
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 59 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 238
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 239 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 385
>gb|BQ467646.1|BQ467646 HS04G23r HS Hordeum vulgare subsp. vulgare cDNA clone HS04G23
5-PRIME, mRNA sequence
Length = 483
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +2
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 59 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 238
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 239 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 385
>gb|BI776549.2|BI776549 EBpi05_SQ001_N14_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_N14 5', mRNA sequence
Length = 409
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +3
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 60 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 239
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 240 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 386
>gb|BQ765092.1|BQ765092 EBca01_SQ005_D19_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_D19 5', mRNA sequence
Length = 422
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +1
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 61 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 240
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 241 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 387
>gb|CA001613.1|CA001613 HS05B06r HS Hordeum vulgare subsp. vulgare cDNA clone HS05B06
5-PRIME, mRNA sequence
Length = 545
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +3
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 60 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 239
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 240 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 386
>gb|CA001781.1|CA001781 HS05J03r HS Hordeum vulgare subsp. vulgare cDNA clone HS05J03
5-PRIME, mRNA sequence
Length = 410
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +3
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 60 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 239
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 240 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 386
>gb|CA012182.1|CA012182 HT04L19r HT Hordeum vulgare subsp. vulgare cDNA clone HT04L19
5-PRIME, mRNA sequence
Length = 549
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +1
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 58 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 237
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 238 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 384
>gb|CA023217.1|CA023217 HZ45J07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45J07
5-PRIME, mRNA sequence
Length = 407
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +2
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 65 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 244
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 245 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 391
>gb|CA024893.1|CA024893 HZ50K02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50K02
5-PRIME, mRNA sequence
Length = 568
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +3
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 78 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 257
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 258 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 404
>gb|CA028145.1|CA028145 HZ61C04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C04
5-PRIME, mRNA sequence
Length = 593
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +3
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 66 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 245
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 246 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 392
>gb|CA029484.1|CA029484 HZ65F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65F17
5-PRIME, mRNA sequence
Length = 469
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +1
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 67 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 246
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 247 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 393
>gb|CK122333.1|CK122333 BES1824102o06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010O062 5-PRIME, mRNA sequence
Length = 771
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +2
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 68 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 247
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 248 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 394
>gb|AF109194.1|AF109194 Hordeum vulgare glutathione-S-transferase mRNA, complete cds
Length = 1092
Score = 116 bits (249), Expect = 1e-025
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3 / +2
Query: 12 MSSPPPVKLIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVL 191
M+ + L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVL
Sbjct: 47 MAGEKGLVLLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVL 226
Query: 192 LHGDGRAISESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
LH +++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 227 LHDGRPVNESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 373
>gb|BQ467879.1|BQ467879 HR01D11r HR Hordeum vulgare subsp. vulgare cDNA clone HR01D11
5-PRIME, mRNA sequence
Length = 500
Score = 52.8 bits (109), Expect(4) = 2e-025
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +3 / +3
Query: 261 GPPLLPADPYARAAARFWADFIETRLTKPF 350
GP LLPADPY RA ARFWA ++E +L P+
Sbjct: 324 GPSLLPADPYERAVARFWAAYVEDKLLPPW 413
Score = 43.7 bits (89), Expect(4) = 2e-025
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +3 / +3
Query: 30 VKLIGFFGSPYAFRAEAALCLKGVPYELILEDL 128
VKL+G + SP+ RA+ AL LKGV YE + E+L
Sbjct: 93 VKLLGMWASPFVVRAQLALRLKGVNYEYVEEEL 191
Score = 40.5 bits (82), Expect(4) = 2e-025
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3 / +3
Query: 117 LEDLFGSKSELLLHHNPVHKKVPVLLH 197
+E+ +KS+L L NPVHK VPVL+H
Sbjct: 177 VEEELANKSDLFLRSNPVHKTVPVLIH 257
Score = 34.1 bits (68), Expect(4) = 2e-025
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3 / +3
Query: 177 KVPVLLHGDGRAISESLVIAEYVDEAFDG 263
K +L DG+ I ES VI +Y+DEAF G
Sbjct: 234 KTVPVLIHDGKPICESQVILQYIDEAFAG 320
>gb|BJ471554.1|BJ471554 BJ471554 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal19e19 5', mRNA sequence
Length = 483
Score = 116 bits (248), Expect = 2e-025
Identities = 48/101 (47%), Positives = 64/101 (63%)
Frame = +3 / +1
Query: 36 LIGFFGSPYAFRAEAALCLKGVPYELILEDLFGSKSELLLHHNPVHKKVPVLLHGDGRAI 215
L+ F+ SP+ R AL KG+PYE + EDL KS+ LL NPVHKK+PVLLH
Sbjct: 34 LLDFWVSPFGQRVRIALAEKGLPYEYVEEDLIAGKSDRLLRSNPVHKKIPVLLHDGRPVN 213
Query: 216 SESLVIAEYVDEAFDGPPLLPADPYARAAARFWADFIETRL 338
+++ D D P LLP+DPYARA ARFWAD+++ ++
Sbjct: 214 ESLIILNYLDDAFPDAPALLPSDPYARAQARFWADYVDKKV 336
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 285,411,860
Number of Sequences: 312970
Number of extensions: 3854969
Number of successful extensions: 53731
Number of sequences better than 1.0e-020: 122
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 10568038489
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)