TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336914.2.1
(1448 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ471435.1|BQ471435 HV02G18r HV Hordeum vulgare subsp. v... 171 1e-064
gb|BM371288.2|BM371288 EBma08_SQ002_C11_R maternal, 28 DPA,... 167 1e-063
gb|BQ763387.1|BQ763387 EBro02_SQ008_O04_R root, 3 week, hyd... 167 1e-063
gb|BE193614.2|BE193614 HVSMEh0081O22f Hordeum vulgare 5-45 ... 165 4e-063
gb|AL507467.1|AL507467 AL507467 Hordeum vulgare Barke devel... 172 6e-063
gb|BQ763415.1|BQ763415 EBro02_SQ008_F07_R root, 3 week, hyd... 172 6e-063
gb|BM373485.2|BM373485 EBma04_SQ004_J22_R maternal, 10 DPA,... 172 6e-063
gb|BQ471542.1|BQ471542 HV02L22r HV Hordeum vulgare subsp. v... 172 6e-063
gb|BQ471411.1|BQ471411 HV02F17r HV Hordeum vulgare subsp. v... 170 2e-062
gb|BI957678.1|BI957678 HVSMEn0010J22f Hordeum vulgare rachi... 160 1e-061
gb|BU979623.1|BU979623 HA16L23r HA Hordeum vulgare subsp. v... 160 2e-061
gb|BU981234.1|BU981234 HA23A06r HA Hordeum vulgare subsp. v... 159 4e-061
gb|BQ459061.1|BQ459061 HA02H05r HA Hordeum vulgare subsp. v... 160 2e-059
gb|BI960172.1|BI960172 HVSMEn0023I14f Hordeum vulgare rachi... 109 8e-059
gb|BG417730.2|BG417730 HVSMEk0019E17f Hordeum vulgare testa... 156 3e-058
gb|BU982763.1|BU982763 HA27I15r HA Hordeum vulgare subsp. v... 144 6e-057
gb|BG343533.2|BG343533 HVSMEg0006F02f Hordeum vulgare pre-a... 148 8e-056
gb|BF625296.2|BF625296 HVSMEa0008E19f Hordeum vulgare seedl... 109 8e-053
gb|AV916732.1|AV916732 AV916732 K. Sato unpublished cDNA li... 172 4e-052
gb|AV922026.1|AV922026 AV922026 K. Sato unpublished cDNA li... 172 4e-052
gb|BQ664296.1|BQ664296 HV02L22u HV Hordeum vulgare subsp. v... 172 2e-051
gb|BI960628.1|BI960628 HVSMEn0025G23f Hordeum vulgare rachi... 122 7e-048
gb|BU982674.1|BU982674 HA27E09r HA Hordeum vulgare subsp. v... 112 2e-047
gb|BG343276.2|BG343276 HVSMEg0005E17f Hordeum vulgare pre-a... 110 2e-044
gb|AL510732.1|AL510732 AL510732 Hordeum vulgare Barke devel... 172 4e-042
gb|AL502849.1|AL502849 AL502849 Hordeum vulgare Barke roots... 163 2e-039
gb|BI958849.1|BI958849 HVSMEn0016O03f Hordeum vulgare rachi... 163 3e-039
gb|BM444860.1|BM444860 EBem09_SQ006_L09_R embryo, 1 Day ger... 163 3e-039
gb|CV056595.1|CV056595 BNEL19E4 Barley EST endosperm librar... 163 3e-039
gb|CV054743.1|CV054743 BNEL112g9 Barley EST endosperm libra... 154 1e-036
gb|BQ760080.1|BQ760080 EBpi07_SQ003_K06_R pistil, 12 DPA, n... 97 2e-036
gb|AJ433789.1|AJ433789 AJ433789 S00002 Hordeum vulgare subs... 153 3e-036
gb|CA026158.1|CA026158 HZ55B18r HZ Hordeum vulgare subsp. v... 95 7e-029
gb|CA029181.1|CA029181 HZ64H06r HZ Hordeum vulgare subsp. v... 90 2e-027
gb|AV922971.1|AV922971 AV922971 K. Sato unpublished cDNA li... 93 5e-024
gb|CA028103.1|CA028103 HZ61A03r HZ Hordeum vulgare subsp. v... 111 1e-023
gb|BI958606.1|BI958606 HVSMEn0015N17f Hordeum vulgare rachi... 90 4e-023
gb|BF065894.2|BF065894 HV_CEb0014E14f Hordeum vulgare seedl... 108 7e-023
gb|BG300692.2|BG300692 HVSMEb0018A09f Hordeum vulgare seedl... 106 2e-022
gb|BI959140.1|BI959140 HVSMEn0018F14f Hordeum vulgare rachi... 83 7e-021
>gb|BQ471435.1|BQ471435 HV02G18r HV Hordeum vulgare subsp. vulgare cDNA clone HV02G18
5-PRIME, mRNA sequence
Length = 572
Score = 171 bits (367), Expect(2) = 1e-064
Identities = 73/92 (79%), Positives = 83/92 (90%)
Frame = -1 / +2
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
E+GRAQGTYTFADQ TFGLLM M+FVFTAG++KGS L+I GR EVLS VREMSIVGG+GK
Sbjct: 281 EIGRAQGTYTFADQATFGLLMNMNFVFTAGDYKGSGLTIYGRNEVLSAVREMSIVGGTGK 460
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
FRMARGYV+A T+DSG KSGETVV+YTV V+A
Sbjct: 461 FRMARGYVEARTMDSGAKSGETVVEYTVYVKA 556
Score = 122 bits (262), Expect(2) = 8e-043
Identities = 59/92 (64%), Positives = 61/92 (66%)
Frame = +1 / -3
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSPDL PESMV A T PRAMRN P+PPTM P M LPL
Sbjct: 555 ALT*TVYSTTVSPDLAPESMVRAST*PRAMRNLPVPPTMLISLTADSTSLRP*MVRPLPL 376
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAV TK + MRRP V WSANV*VP ARP S
Sbjct: 375 *SPAVKTKFMFMRRPKVAWSANV*VPCARPIS 280
Score = 97.3 bits (206), Expect(2) = 1e-064
Identities = 38/52 (73%), Positives = 47/52 (90%)
Frame = -1 / +2
Query: 611 DSGFTTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
D G T FK+++HD++AGTSPTAIRIAQ A++N+SST FGA+VAIDDPLTTGP
Sbjct: 95 DDGLTKFKLYWHDVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGP 250
Score = 72.1 bits (151), Expect(2) = 8e-043
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +1 / -3
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVVNP 606
GPVVSGSSMAT APK V+E+L A CA+R+AVGLVPA+ S + +L +V P
Sbjct: 249 GPVVSGSSMATTAPKKVEELLVDAACAIRIAVGLVPASTSCQYSLNLVRP 100
>gb|BM371288.2|BM371288 EBma08_SQ002_C11_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_C11 5', mRNA sequence
Length = 601
Score = 167 bits (359), Expect(2) = 1e-063
Identities = 71/88 (80%), Positives = 80/88 (90%)
Frame = -1 / +3
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
E+GRAQGTYTFADQ TFGLLM M+FVFTAG++KGS L+I GR EVLS VREMSIVGG+GK
Sbjct: 333 EIGRAQGTYTFADQATFGLLMNMNFVFTAGDYKGSGLTIYGRNEVLSAVREMSIVGGTGK 512
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTV 174
FRMARGYV+A T+DSG KSGETVV+YTV
Sbjct: 513 FRMARGYVEARTMDSGAKSGETVVEYTV 596
Score = 119 bits (254), Expect(2) = 1e-041
Identities = 57/90 (63%), Positives = 59/90 (65%)
Frame = +1 / -1
Query: 169 TLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLCS 348
T TVY TTVSPDL PESMV A T PRAMRN P+PPTM P M LPL S
Sbjct: 601 T*TVYSTTVSPDLAPESMVRAST*PRAMRNLPVPPTMLISLTADSTSLRP*MVRPLPL*S 422
Query: 349 PAVNTKSITMRRPNVCWSANV*VPWARPTS 438
PAV TK + MRRP V WSANV*VP ARP S
Sbjct: 421 PAVKTKFMFMRRPKVAWSANV*VPCARPIS 332
Score = 97.3 bits (206), Expect(2) = 1e-063
Identities = 38/52 (73%), Positives = 47/52 (90%)
Frame = -1 / +3
Query: 611 DSGFTTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
D G T FK+++HD++AGTSPTAIRIAQ A++N+SST FGA+VAIDDPLTTGP
Sbjct: 147 DDGLTKFKLYWHDVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGP 302
Score = 72.1 bits (151), Expect(2) = 1e-041
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +1 / -1
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVVNP 606
GPVVSGSSMAT APK V+E+L A CA+R+AVGLVPA+ S + +L +V P
Sbjct: 301 GPVVSGSSMATTAPKKVEELLVDAACAIRIAVGLVPASTSCQYSLNLVRP 152
>gb|BQ763387.1|BQ763387 EBro02_SQ008_O04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_O04 5', mRNA sequence
Length = 543
Score = 167 bits (359), Expect(2) = 1e-063
Identities = 71/88 (80%), Positives = 80/88 (90%)
Frame = -1 / +2
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
E+GRAQGTYTFADQ TFGLLM M+FVFTAG++KGS L+I GR EVLS VREMSIVGG+GK
Sbjct: 275 EIGRAQGTYTFADQATFGLLMNMNFVFTAGDYKGSGLTIYGRNEVLSAVREMSIVGGTGK 454
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTV 174
FRMARGYV+A T+DSG KSGETVV+YTV
Sbjct: 455 FRMARGYVEARTMDSGAKSGETVVEYTV 538
Score = 119 bits (254), Expect(2) = 1e-041
Identities = 57/90 (63%), Positives = 59/90 (65%)
Frame = +1 / -1
Query: 169 TLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLCS 348
T TVY TTVSPDL PESMV A T PRAMRN P+PPTM P M LPL S
Sbjct: 543 T*TVYSTTVSPDLAPESMVRAST*PRAMRNLPVPPTMLISLTADSTSLRP*MVRPLPL*S 364
Query: 349 PAVNTKSITMRRPNVCWSANV*VPWARPTS 438
PAV TK + MRRP V WSANV*VP ARP S
Sbjct: 363 PAVKTKFMFMRRPKVAWSANV*VPCARPIS 274
Score = 97.3 bits (206), Expect(2) = 1e-063
Identities = 38/52 (73%), Positives = 47/52 (90%)
Frame = -1 / +2
Query: 611 DSGFTTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
D G T FK+++HD++AGTSPTAIRIAQ A++N+SST FGA+VAIDDPLTTGP
Sbjct: 89 DDGLTKFKLYWHDVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGP 244
Score = 72.1 bits (151), Expect(2) = 1e-041
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +1 / -1
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVVNP 606
GPVVSGSSMAT APK V+E+L A CA+R+AVGLVPA+ S + +L +V P
Sbjct: 243 GPVVSGSSMATTAPKKVEELLVDAACAIRIAVGLVPASTSCQYSLNLVRP 94
>gb|BE193614.2|BE193614 HVSMEh0081O22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081O22f, mRNA sequence
Length = 756
Score = 165 bits (355), Expect(2) = 4e-063
Identities = 71/91 (78%), Positives = 81/91 (89%)
Frame = -1 / +2
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
E+GRAQGTYTFADQ TFGLLM M+FVFTAG++KGS L+I GR EVLS VREMSIVGG+GK
Sbjct: 212 EIGRAQGTYTFADQATFGLLMNMNFVFTAGDYKGSGLTIYGRNEVLSAVREMSIVGGTGK 391
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVR 165
FRMARGYV+A T+DS KSGETVV+YTV V+
Sbjct: 392 FRMARGYVEARTMDSRAKSGETVVEYTVYVK 484
Score = 116 bits (249), Expect(2) = 5e-041
Identities = 57/91 (62%), Positives = 59/91 (64%)
Frame = +1 / -1
Query: 166 LTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLC 345
LT TVY TTVSPDL ESMV A T PRAMRN P+PPTM P M LPL
Sbjct: 483 LT*TVYSTTVSPDLARESMVRAST*PRAMRNLPVPPTMLISLTADSTSLRP*MVRPLPL* 304
Query: 346 SPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAV TK + MRRP V WSANV*VP ARP S
Sbjct: 303 SPAVKTKFMFMRRPKVAWSANV*VPCARPIS 211
Score = 97.3 bits (206), Expect(2) = 4e-063
Identities = 38/52 (73%), Positives = 47/52 (90%)
Frame = -1 / +2
Query: 611 DSGFTTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
D G T FK+++HD++AGTSPTAIRIAQ A++N+SST FGA+VAIDDPLTTGP
Sbjct: 26 DDGLTKFKLYWHDVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGP 181
Score = 72.1 bits (151), Expect(2) = 5e-041
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +1 / -1
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVVNP 606
GPVVSGSSMAT APK V+E+L A CA+R+AVGLVPA+ S + +L +V P
Sbjct: 180 GPVVSGSSMATTAPKKVEELLVDAACAIRIAVGLVPASTSCQYSLNLVRP 31
>gb|AL507467.1|AL507467 AL507467 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05N10V 5',
mRNA sequence
Length = 668
Score = 172 bits (370), Expect(2) = 6e-063
Identities = 74/92 (80%), Positives = 83/92 (90%)
Frame = -1 / +3
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GK
Sbjct: 315 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGK 494
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
FRMARGYVQA T+DSG SGETVV+YTV V+A
Sbjct: 495 FRMARGYVQASTVDSGANSGETVVEYTVYVKA 590
Score = 129 bits (276), Expect(2) = 3e-044
Identities = 58/92 (63%), Positives = 62/92 (67%)
Frame = +1 / -2
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSP+L PES V AWT PRAMRN P+PP M P M +LPL
Sbjct: 589 ALTYTVYSTTVSPELAPESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPL 410
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAVNTK + MR P V WSANV*VP ARPTS
Sbjct: 409 YSPAVNTKFMFMRSPKVAWSANV*VPCARPTS 314
Score = 90.0 bits (190), Expect(2) = 6e-063
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -1 / +3
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
T FKV+FHD++AG SPTAIRIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 141 TKFKVYFHDVLAGKSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTSP 284
Score = 70.7 bits (148), Expect(2) = 3e-044
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +1 / -2
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVV 600
G VVSGSSMAT APK V+E+L A CA+R+AVGL PA SWK TL +V
Sbjct: 283 GLVVSGSSMATTAPKKVEELLVDAACAIRIAVGLFPARTSWKYTLNLV 140
>gb|BQ763415.1|BQ763415 EBro02_SQ008_F07_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_F07 5', mRNA sequence
Length = 660
Score = 172 bits (370), Expect(2) = 6e-063
Identities = 74/92 (80%), Positives = 83/92 (90%)
Frame = -1 / +2
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GK
Sbjct: 287 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGK 466
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
FRMARGYVQA T+DSG SGETVV+YTV V+A
Sbjct: 467 FRMARGYVQASTVDSGANSGETVVEYTVYVKA 562
Score = 129 bits (276), Expect(2) = 3e-044
Identities = 58/92 (63%), Positives = 62/92 (67%)
Frame = +1 / -1
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSP+L PES V AWT PRAMRN P+PP M P M +LPL
Sbjct: 561 ALTYTVYSTTVSPELAPESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPL 382
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAVNTK + MR P V WSANV*VP ARPTS
Sbjct: 381 YSPAVNTKFMFMRSPKVAWSANV*VPCARPTS 286
Score = 90.0 bits (190), Expect(2) = 6e-063
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -1 / +2
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
T FKV+FHD++AG SPTAIRIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 113 TKFKVYFHDVLAGKSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTSP 256
Score = 70.7 bits (148), Expect(2) = 3e-044
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +1 / -1
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVV 600
G VVSGSSMAT APK V+E+L A CA+R+AVGL PA SWK TL +V
Sbjct: 255 GLVVSGSSMATTAPKKVEELLVDAACAIRIAVGLFPARTSWKYTLNLV 112
>gb|BM373485.2|BM373485 EBma04_SQ004_J22_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ004_J22 5', mRNA sequence
Length = 634
Score = 172 bits (370), Expect(2) = 6e-063
Identities = 74/92 (80%), Positives = 83/92 (90%)
Frame = -1 / +3
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GK
Sbjct: 285 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGK 464
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
FRMARGYVQA T+DSG SGETVV+YTV V+A
Sbjct: 465 FRMARGYVQASTVDSGANSGETVVEYTVYVKA 560
Score = 129 bits (276), Expect(2) = 3e-044
Identities = 58/92 (63%), Positives = 62/92 (67%)
Frame = +1 / -1
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSP+L PES V AWT PRAMRN P+PP M P M +LPL
Sbjct: 559 ALTYTVYSTTVSPELAPESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPL 380
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAVNTK + MR P V WSANV*VP ARPTS
Sbjct: 379 YSPAVNTKFMFMRSPKVAWSANV*VPCARPTS 284
Score = 90.0 bits (190), Expect(2) = 6e-063
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -1 / +3
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
T FKV+FHD++AG SPTAIRIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 111 TKFKVYFHDVLAGKSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTSP 254
Score = 70.7 bits (148), Expect(2) = 3e-044
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +1 / -1
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVV 600
G VVSGSSMAT APK V+E+L A CA+R+AVGL PA SWK TL +V
Sbjct: 253 GLVVSGSSMATTAPKKVEELLVDAACAIRIAVGLFPARTSWKYTLNLV 110
>gb|BQ471542.1|BQ471542 HV02L22r HV Hordeum vulgare subsp. vulgare cDNA clone HV02L22
5-PRIME, mRNA sequence
Length = 565
Score = 172 bits (370), Expect(2) = 6e-063
Identities = 74/92 (80%), Positives = 83/92 (90%)
Frame = -1 / +2
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GK
Sbjct: 290 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGK 469
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
FRMARGYVQA T+DSG SGETVV+YTV V+A
Sbjct: 470 FRMARGYVQASTVDSGANSGETVVEYTVYVKA 565
Score = 129 bits (276), Expect(2) = 3e-044
Identities = 58/92 (63%), Positives = 62/92 (67%)
Frame = +1 / -2
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSP+L PES V AWT PRAMRN P+PP M P M +LPL
Sbjct: 564 ALTYTVYSTTVSPELAPESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPL 385
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAVNTK + MR P V WSANV*VP ARPTS
Sbjct: 384 YSPAVNTKFMFMRSPKVAWSANV*VPCARPTS 289
Score = 90.0 bits (190), Expect(2) = 6e-063
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -1 / +2
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
T FKV+FHD++AG SPTAIRIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 116 TKFKVYFHDVLAGKSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTSP 259
Score = 70.7 bits (148), Expect(2) = 3e-044
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +1 / -2
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVV 600
G VVSGSSMAT APK V+E+L A CA+R+AVGL PA SWK TL +V
Sbjct: 258 GLVVSGSSMATTAPKKVEELLVDAACAIRIAVGLFPARTSWKYTLNLV 115
>gb|BQ471411.1|BQ471411 HV02F17r HV Hordeum vulgare subsp. vulgare cDNA clone HV02F17
5-PRIME, mRNA sequence
Length = 572
Score = 170 bits (366), Expect(2) = 2e-062
Identities = 73/91 (80%), Positives = 82/91 (90%)
Frame = -1 / +2
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GK
Sbjct: 299 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGK 478
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVR 165
FRMARGYVQA T+DSG SGETVV+YTV V+
Sbjct: 479 FRMARGYVQASTVDSGANSGETVVEYTVYVK 571
Score = 127 bits (272), Expect(2) = 9e-044
Identities = 57/91 (62%), Positives = 61/91 (67%)
Frame = +1 / -3
Query: 166 LTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLC 345
LT TVY TTVSP+L PES V AWT PRAMRN P+PP M P M +LPL
Sbjct: 570 LTYTVYSTTVSPELAPESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPLY 391
Query: 346 SPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAVNTK + MR P V WSANV*VP ARPTS
Sbjct: 390 SPAVNTKFMFMRSPKVAWSANV*VPCARPTS 298
Score = 90.0 bits (190), Expect(2) = 2e-062
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -1 / +2
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
T FKV+FHD++AG SPTAIRIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 125 TKFKVYFHDVLAGKSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTSP 268
Score = 70.7 bits (148), Expect(2) = 9e-044
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +1 / -3
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVV 600
G VVSGSSMAT APK V+E+L A CA+R+AVGL PA SWK TL +V
Sbjct: 267 GLVVSGSSMATTAPKKVEELLVDAACAIRIAVGLFPARTSWKYTLNLV 124
>gb|BI957678.1|BI957678 HVSMEn0010J22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010J22f, mRNA sequence
Length = 659
Score = 160 bits (344), Expect(2) = 1e-061
Identities = 70/92 (76%), Positives = 80/92 (86%)
Frame = -1 / +1
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
E+GRAQGTYTFADQ TFGLLM M+FVFTAG++KGS L+I GR EVLS VREMSIV G+GK
Sbjct: 286 EIGRAQGTYTFADQATFGLLMNMNFVFTAGDYKGSGLTIYGRNEVLSAVREMSIVWGTGK 465
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
FRMARGYV+A T+DS KSGET V+YTV V+A
Sbjct: 466 FRMARGYVEARTMDSRAKSGETGVEYTVYVKA 561
Score = 112 bits (239), Expect(2) = 1e-039
Identities = 56/92 (60%), Positives = 58/92 (63%)
Frame = +1 / -1
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY T VSPDL ESMV A T PRAMRN P+P TM P M LPL
Sbjct: 560 ALT*TVYSTPVSPDLARESMVRAST*PRAMRNLPVPQTMLISLTADSTSLRP*MVRPLPL 381
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAV TK + MRRP V WSANV*VP ARP S
Sbjct: 380 *SPAVKTKFMFMRRPKVAWSANV*VPCARPIS 285
Score = 97.3 bits (206), Expect(2) = 1e-061
Identities = 38/52 (73%), Positives = 47/52 (90%)
Frame = -1 / +1
Query: 611 DSGFTTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
D G T FK+++HD++AGTSPTAIRIAQ A++N+SST FGA+VAIDDPLTTGP
Sbjct: 100 DDGLTKFKLYWHDVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGP 255
Score = 72.1 bits (151), Expect(2) = 1e-039
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +1 / -1
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVVNP 606
GPVVSGSSMAT APK V+E+L A CA+R+AVGLVPA+ S + +L +V P
Sbjct: 254 GPVVSGSSMATTAPKKVEELLVDAACAIRIAVGLVPASTSCQYSLNLVRP 105
>gb|BU979623.1|BU979623 HA16L23r HA Hordeum vulgare subsp. vulgare cDNA clone HA16L23
5-PRIME, mRNA sequence
Length = 540
Score = 160 bits (343), Expect(2) = 2e-061
Identities = 68/85 (80%), Positives = 77/85 (90%)
Frame = -1 / +3
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
E+GRAQGTYTFADQ TFGLLM M+FVFTAG++KGS L+I GR EVLS VREMSIVGG+GK
Sbjct: 285 EIGRAQGTYTFADQATFGLLMNMNFVFTAGDYKGSGLTIYGRNEVLSAVREMSIVGGTGK 464
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQ 183
FRMARGYV+A T+DSG KSGETVV+
Sbjct: 465 FRMARGYVEARTMDSGAKSGETVVE 539
Score = 112 bits (240), Expect(2) = 8e-040
Identities = 53/84 (63%), Positives = 55/84 (65%)
Frame = +1 / -3
Query: 187 TTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLCSPAVNTK 366
TTVSPDL PESMV A T PRAMRN P+PPTM P M LPL SPAV TK
Sbjct: 535 TTVSPDLAPESMVRAST*PRAMRNLPVPPTMLISLTADSTSLRP*MVRPLPL*SPAVKTK 356
Query: 367 SITMRRPNVCWSANV*VPWARPTS 438
+ MRRP V WSANV*VP ARP S
Sbjct: 355 FMFMRRPKVAWSANV*VPCARPIS 284
Score = 97.3 bits (206), Expect(2) = 2e-061
Identities = 38/52 (73%), Positives = 47/52 (90%)
Frame = -1 / +3
Query: 611 DSGFTTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
D G T FK+++HD++AGTSPTAIRIAQ A++N+SST FGA+VAIDDPLTTGP
Sbjct: 99 DDGLTKFKLYWHDVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGP 254
Score = 72.1 bits (151), Expect(2) = 8e-040
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +1 / -3
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVVNP 606
GPVVSGSSMAT APK V+E+L A CA+R+AVGLVPA+ S + +L +V P
Sbjct: 253 GPVVSGSSMATTAPKKVEELLVDAACAIRIAVGLVPASTSCQYSLNLVRP 104
>gb|BU981234.1|BU981234 HA23A06r HA Hordeum vulgare subsp. vulgare cDNA clone HA23A06
5-PRIME, mRNA sequence
Length = 537
Score = 159 bits (341), Expect(2) = 4e-061
Identities = 68/84 (80%), Positives = 76/84 (90%)
Frame = -1 / +3
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
E+GRAQGTYTFADQ TFGLLM M+FVFTAG++KGS L+I GR EVLS VREMSIVGG+GK
Sbjct: 285 EIGRAQGTYTFADQATFGLLMNMNFVFTAGDYKGSGLTIYGRNEVLSAVREMSIVGGTGK 464
Query: 257 FRMARGYVQAHTIDSGFKSGETVV 186
FRMARGYV+A T+DSG KSGETVV
Sbjct: 465 FRMARGYVEARTMDSGAKSGETVV 536
Score = 112 bits (240), Expect(2) = 8e-040
Identities = 53/84 (63%), Positives = 55/84 (65%)
Frame = +1 / -3
Query: 187 TTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLCSPAVNTK 366
TTVSPDL PESMV A T PRAMRN P+PPTM P M LPL SPAV TK
Sbjct: 535 TTVSPDLAPESMVRAST*PRAMRNLPVPPTMLISLTADSTSLRP*MVRPLPL*SPAVKTK 356
Query: 367 SITMRRPNVCWSANV*VPWARPTS 438
+ MRRP V WSANV*VP ARP S
Sbjct: 355 FMFMRRPKVAWSANV*VPCARPIS 284
Score = 97.3 bits (206), Expect(2) = 4e-061
Identities = 38/52 (73%), Positives = 47/52 (90%)
Frame = -1 / +3
Query: 611 DSGFTTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
D G T FK+++HD++AGTSPTAIRIAQ A++N+SST FGA+VAIDDPLTTGP
Sbjct: 99 DDGLTKFKLYWHDVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGP 254
Score = 72.1 bits (151), Expect(2) = 8e-040
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +1 / -3
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVVNP 606
GPVVSGSSMAT APK V+E+L A CA+R+AVGLVPA+ S + +L +V P
Sbjct: 253 GPVVSGSSMATTAPKKVEELLVDAACAIRIAVGLVPASTSCQYSLNLVRP 104
>gb|BQ459061.1|BQ459061 HA02H05r HA Hordeum vulgare subsp. vulgare cDNA clone HA02H05
5-PRIME, mRNA sequence
Length = 546
Score = 160 bits (344), Expect(2) = 2e-059
Identities = 69/84 (82%), Positives = 76/84 (90%)
Frame = -1 / +3
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GK
Sbjct: 294 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGK 473
Query: 257 FRMARGYVQAHTIDSGFKSGETVV 186
FRMARGYVQA T+DSG SGETVV
Sbjct: 474 FRMARGYVQASTVDSGANSGETVV 545
Score = 117 bits (251), Expect(2) = 7e-041
Identities = 52/84 (61%), Positives = 56/84 (66%)
Frame = +1 / -3
Query: 187 TTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLCSPAVNTK 366
TTVSP+L PES V AWT PRAMRN P+PP M P M +LPL SPAVNTK
Sbjct: 544 TTVSPELAPESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPLYSPAVNTK 365
Query: 367 SITMRRPNVCWSANV*VPWARPTS 438
+ MR P V WSANV*VP ARPTS
Sbjct: 364 FMFMRSPKVAWSANV*VPCARPTS 293
Score = 90.0 bits (190), Expect(2) = 2e-059
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -1 / +3
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
T FKV+FHD++AG SPTAIRIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 120 TKFKVYFHDVLAGKSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTSP 263
Score = 70.7 bits (148), Expect(2) = 7e-041
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +1 / -3
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVV 600
G VVSGSSMAT APK V+E+L A CA+R+AVGL PA SWK TL +V
Sbjct: 262 GLVVSGSSMATTAPKKVEELLVDAACAIRIAVGLFPARTSWKYTLNLV 119
>gb|BI960172.1|BI960172 HVSMEn0023I14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023I14f, mRNA sequence
Length = 644
Score = 109 bits (233), Expect(3) = 8e-059
Identities = 47/58 (81%), Positives = 53/58 (91%)
Frame = -1 / +2
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGS 264
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+
Sbjct: 287 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGT 460
Score = 90.0 bits (190), Expect(3) = 8e-059
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -1 / +2
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
T FKV+FHD++AG SPTAIRIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 113 TKFKVYFHDVLAGKSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTSP 256
Score = 70.7 bits (148), Expect(3) = 3e-040
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +1 / -3
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVV 600
G VVSGSSMAT APK V+E+L A CA+R+AVGL PA SWK TL +V
Sbjct: 255 GLVVSGSSMATTAPKKVEELLVDAACAIRIAVGLFPARTSWKYTLNLV 112
Score = 70.7 bits (148), Expect(3) = 3e-040
Identities = 32/58 (55%), Positives = 35/58 (60%)
Frame = +1 / -3
Query: 265 LPPTMXXXXXXXXXXXXPRMESVLPLCSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
+PP M P M +LPL SPAVNTK + MR P V WSANV*VP ARPTS
Sbjct: 459 VPPRMLISLTAESTSLRP*MVRLLPLYSPAVNTKFMFMRSPKVAWSANV*VPCARPTS 286
Score = 67.5 bits (141), Expect(3) = 8e-059
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = -1 / +2
Query: 272 GGSGKFRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
G GKFRMARGYVQA T+DSG SGETVV+YTV V+A
Sbjct: 455 GTXGKFRMARGYVQASTVDSGANSGETVVEYTVYVKA 565
Score = 63.4 bits (132), Expect(3) = 3e-040
Identities = 27/37 (72%), Positives = 28/37 (75%)
Frame = +1 / -3
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPP 273
ALT TVY TTVSP+L PES V AWT PRAMRN P P
Sbjct: 564 ALTYTVYSTTVSPELAPESTVLAWT*PRAMRNLPXVP 454
>gb|BG417730.2|BG417730 HVSMEk0019E17f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019E17f, mRNA sequence
Length = 877
Score = 156 bits (336), Expect(2) = 3e-058
Identities = 70/92 (76%), Positives = 78/92 (84%)
Frame = -1 / +3
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I R EVLS VREMSI+GG+GK
Sbjct: 279 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYCRNEVLSAVREMSILGGTGK 458
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
FRMARGY+QA T DSG S +TVV YTV V A
Sbjct: 459 FRMARGYLQASTGDSGANSSKTVVXYTVYVNA 554
Score = 115 bits (246), Expect(2) = 3e-040
Identities = 54/92 (58%), Positives = 58/92 (63%)
Frame = +1 / -1
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTV +L PES V AW PRAMRN P+PP M M +LPL
Sbjct: 553 ALTYTVYXTTVLLELAPESPVLAWR*PRAMRNLPVPPRMLISLTAESTSLRQ*MVRLLPL 374
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAVNTK + MR P V WSANV*VP ARPTS
Sbjct: 373 YSPAVNTKFMFMRSPKVAWSANV*VPCARPTS 278
Score = 90.0 bits (190), Expect(2) = 3e-058
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -1 / +3
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
T FKV+FHD++AG SPTAIRIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 105 TKFKVYFHDVLAGKSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTSP 248
Score = 70.7 bits (148), Expect(2) = 3e-040
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +1 / -1
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVV 600
G VVSGSSMAT APK V+E+L A CA+R+AVGL PA SWK TL +V
Sbjct: 247 GLVVSGSSMATTAPKKVEELLVDAACAIRIAVGLFPARTSWKYTLNLV 104
>gb|BU982763.1|BU982763 HA27I15r HA Hordeum vulgare subsp. vulgare cDNA clone HA27I15
5-PRIME, mRNA sequence
Length = 587
Score = 144 bits (310), Expect(2) = 6e-057
Identities = 61/78 (78%), Positives = 70/78 (89%)
Frame = -1 / +2
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
E+GRAQGTYTFADQ TFGLLM M+FVFTAG++KGS L+I GR EVLS VR+MSIVGG+GK
Sbjct: 353 EIGRAQGTYTFADQATFGLLMNMNFVFTAGDYKGSGLTIYGRNEVLSAVRDMSIVGGTGK 532
Query: 257 FRMARGYVQAHTIDSGFK 204
FRMARGYV+A T+DSG K
Sbjct: 533 FRMARGYVEARTMDSGAK 586
Score = 98.7 bits (209), Expect(2) = 1e-035
Identities = 47/78 (60%), Positives = 49/78 (62%)
Frame = +1 / -3
Query: 205 LKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLCSPAVNTKSITMRR 384
L PESMV A T PRAMRN P+PPTM P M LPL SPAV TK + MRR
Sbjct: 585 LAPESMVRAST*PRAMRNLPVPPTMLISLTADSTSLRP*MVRPLPL*SPAVKTKFMFMRR 406
Query: 385 PNVCWSANV*VPWARPTS 438
P V WSANV*VP ARP S
Sbjct: 405 PKVAWSANV*VPCARPIS 352
Score = 97.3 bits (206), Expect(2) = 6e-057
Identities = 38/52 (73%), Positives = 47/52 (90%)
Frame = -1 / +2
Query: 611 DSGFTTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
D G T FK+++HD++AGTSPTAIRIAQ A++N+SST FGA+VAIDDPLTTGP
Sbjct: 167 DDGLTKFKLYWHDVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGP 322
Score = 72.1 bits (151), Expect(2) = 1e-035
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +1 / -3
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVVNP 606
GPVVSGSSMAT APK V+E+L A CA+R+AVGLVPA+ S + +L +V P
Sbjct: 321 GPVVSGSSMATTAPKKVEELLVDAACAIRIAVGLVPASTSCQYSLNLVRP 172
>gb|BG343533.2|BG343533 HVSMEg0006F02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006F02f, mRNA sequence
Length = 962
Score = 148 bits (318), Expect(2) = 8e-056
Identities = 63/76 (82%), Positives = 70/76 (92%)
Frame = -1 / +2
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GK
Sbjct: 284 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGK 463
Query: 257 FRMARGYVQAHTIDSG 210
FRMARGYVQA T+DSG
Sbjct: 464 FRMARGYVQASTVDSG 511
Score = 104 bits (221), Expect(2) = 8e-037
Identities = 46/76 (60%), Positives = 49/76 (64%)
Frame = +1 / -3
Query: 211 PESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLCSPAVNTKSITMRRPN 390
PES V AWT PRAMRN P+PP M P M +LPL SPAVNTK + MR P
Sbjct: 510 PESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPLYSPAVNTKFMFMRSPK 331
Query: 391 VCWSANV*VPWARPTS 438
V WSANV*VP ARPTS
Sbjct: 330 VAWSANV*VPCARPTS 283
Score = 90.0 bits (190), Expect(2) = 8e-056
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -1 / +2
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
T FKV+FHD++AG SPTAIRIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 110 TKFKVYFHDVLAGKSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTSP 253
Score = 70.7 bits (148), Expect(2) = 8e-037
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +1 / -3
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVV 600
G VVSGSSMAT APK V+E+L A CA+R+AVGL PA SWK TL +V
Sbjct: 252 GLVVSGSSMATTAPKKVEELLVDAACAIRIAVGLFPARTSWKYTLNLV 109
>gb|BF625296.2|BF625296 HVSMEa0008E19f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008E19f, mRNA sequence
Length = 706
Score = 109 bits (232), Expect(4) = 8e-053
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = -1 / +3
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS L+I GR EVLS VREM I+GG+G+
Sbjct: 273 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSILTIYGRNEVLSAVREMIILGGTGQ 452
Score = 90.0 bits (190), Expect(4) = 8e-053
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -1 / +3
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
T FKV+FHD++AG SPTAIRIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 99 TKFKVYFHDVLAGKSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTSP 242
Score = 74.4 bits (156), Expect(3) = 1e-032
Identities = 33/60 (55%), Positives = 37/60 (61%)
Frame = +1 / -1
Query: 259 FPLPPTMXXXXXXXXXXXXPRMESVLPLCSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
+P+PP M P M +LPL SPAVNTK + MR P V WSANV*VP ARPTS
Sbjct: 451 WPVPPRMIISLTAESTSFRP*MVRMLPLYSPAVNTKFMFMRSPKVAWSANV*VPCARPTS 272
Score = 70.7 bits (148), Expect(3) = 1e-032
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +1 / -1
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVV 600
G VVSGSSMAT APK V+E+L A CA+R+AVGL PA SWK TL +V
Sbjct: 241 GLVVSGSSMATTAPKKVEELLVDAACAIRIAVGLFPARTSWKYTLNLV 98
Score = 37.3 bits (75), Expect(4) = 8e-053
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = -1 / +2
Query: 224 TIDSGFKSGETVVQYTVNVRA 162
T+DSG SGETV++YTV V+A
Sbjct: 488 TVDSGANSGETVIEYTVYVKA 550
Score = 34.1 bits (68), Expect(3) = 1e-032
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +1 / -2
Query: 163 ALTLTVYWTTVSPDLKPESMV 225
ALT TVY TVSP+L PES V
Sbjct: 549 ALTYTVYSMTVSPELAPESTV 487
Score = 28.6 bits (56), Expect(4) = 8e-053
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1 / +1
Query: 272 GGSGKFRMARGYVQA 228
G KFRMA GYVQA
Sbjct: 439 GARAKFRMAHGYVQA 483
>gb|AV916732.1|AV916732 AV916732 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19h04 5', mRNA sequence
Length = 566
Score = 172 bits (370), Expect(2) = 4e-052
Identities = 74/92 (80%), Positives = 83/92 (90%)
Frame = -1 / +1
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GK
Sbjct: 130 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGK 309
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
FRMARGYVQA T+DSG SGETVV+YTV V+A
Sbjct: 310 FRMARGYVQASTVDSGANSGETVVEYTVYVKA 405
Score = 129 bits (276), Expect(2) = 3e-036
Identities = 58/92 (63%), Positives = 62/92 (67%)
Frame = +1 / -1
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSP+L PES V AWT PRAMRN P+PP M P M +LPL
Sbjct: 404 ALTYTVYSTTVSPELAPESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPL 225
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAVNTK + MR P V WSANV*VP ARPTS
Sbjct: 224 YSPAVNTKFMFMRSPKVAWSANV*VPCARPTS 129
Score = 53.8 bits (111), Expect(2) = 4e-052
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = -1 / +1
Query: 542 RIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
RIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 13 RIAQAASTNSSSTFFGAVVAIDDPLTTSP 99
Score = 43.7 bits (89), Expect(2) = 3e-036
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +1 / -1
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMR 543
G VVSGSSMAT APK V+E+L A CA+R
Sbjct: 98 GLVVSGSSMATTAPKKVEELLVDAACAIR 12
>gb|AV922026.1|AV922026 AV922026 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19h04 3', mRNA sequence
Length = 519
Score = 172 bits (370), Expect(2) = 4e-052
Identities = 74/92 (80%), Positives = 83/92 (90%)
Frame = -1 / -3
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GK
Sbjct: 400 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGK 221
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
FRMARGYVQA T+DSG SGETVV+YTV V+A
Sbjct: 220 FRMARGYVQASTVDSGANSGETVVEYTVYVKA 125
Score = 129 bits (276), Expect(2) = 3e-036
Identities = 58/92 (63%), Positives = 62/92 (67%)
Frame = +1 / +3
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSP+L PES V AWT PRAMRN P+PP M P M +LPL
Sbjct: 126 ALTYTVYSTTVSPELAPESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPL 305
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAVNTK + MR P V WSANV*VP ARPTS
Sbjct: 306 YSPAVNTKFMFMRSPKVAWSANV*VPCARPTS 401
Score = 53.8 bits (111), Expect(2) = 4e-052
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = -1 / -3
Query: 542 RIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
RIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 517 RIAQAASTNSSSTFFGAVVAIDDPLTTSP 431
Score = 43.7 bits (89), Expect(2) = 3e-036
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +1 / +3
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMR 543
G VVSGSSMAT APK V+E+L A CA+R
Sbjct: 432 GLVVSGSSMATTAPKKVEELLVDAACAIR 518
>gb|BQ664296.1|BQ664296 HV02L22u HV Hordeum vulgare subsp. vulgare cDNA clone HV02L22
3-PRIME, mRNA sequence
Length = 510
Score = 172 bits (370), Expect(2) = 2e-051
Identities = 74/92 (80%), Positives = 83/92 (90%)
Frame = -1 / -2
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GK
Sbjct: 395 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGK 216
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
FRMARGYVQA T+DSG SGETVV+YTV V+A
Sbjct: 215 FRMARGYVQASTVDSGANSGETVVEYTVYVKA 120
Score = 129 bits (276), Expect(2) = 1e-035
Identities = 58/92 (63%), Positives = 62/92 (67%)
Frame = +1 / +1
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSP+L PES V AWT PRAMRN P+PP M P M +LPL
Sbjct: 121 ALTYTVYSTTVSPELAPESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPL 300
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAVNTK + MR P V WSANV*VP ARPTS
Sbjct: 301 YSPAVNTKFMFMRSPKVAWSANV*VPCARPTS 396
Score = 51.5 bits (106), Expect(2) = 2e-051
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -1 / -2
Query: 539 IAQGAASNTSSTSFGAMVAIDDPLTTGP 456
IAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 509 IAQAASTNSSSTFFGAVVAIDDPLTTSP 426
Score = 41.4 bits (84), Expect(2) = 1e-035
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +1 / +1
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAM 540
G VVSGSSMAT APK V+E+L A CA+
Sbjct: 427 GLVVSGSSMATTAPKKVEELLVDAACAI 510
>gb|BI960628.1|BI960628 HVSMEn0025G23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025G23f, mRNA sequence
Length = 645
Score = 122 bits (260), Expect(2) = 7e-048
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = -1 / +1
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GK
Sbjct: 289 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGK 468
Query: 257 FRMARGYVQA 228
F + YV A
Sbjct: 469 FPLDHRYVPA 498
Score = 90.0 bits (190), Expect(2) = 7e-048
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -1 / +1
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
T FKV+FHD++AG SPTAIRIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 115 TKFKVYFHDVLAGKSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTSP 258
Score = 76.7 bits (161), Expect(2) = 1e-028
Identities = 34/61 (55%), Positives = 37/61 (60%)
Frame = +1 / -2
Query: 256 NFPLPPTMXXXXXXXXXXXXPRMESVLPLCSPAVNTKSITMRRPNVCWSANV*VPWARPT 435
N P+PP M P M +LPL SPAVNTK + MR P V WSANV*VP ARPT
Sbjct: 470 NLPVPPRMLISLTAESTSLRP*MVRLLPLYSPAVNTKFMFMRSPKVAWSANV*VPCARPT 291
Query: 436 S 438
S
Sbjct: 290 S 288
Score = 70.7 bits (148), Expect(2) = 1e-028
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +1 / -2
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVV 600
G VVSGSSMAT APK V+E+L A CA+R+AVGL PA SWK TL +V
Sbjct: 257 GLVVSGSSMATTAPKKVEELLVDAACAIRIAVGLFPARTSWKYTLNLV 114
>gb|BU982674.1|BU982674 HA27E09r HA Hordeum vulgare subsp. vulgare cDNA clone HA27E09
5-PRIME, mRNA sequence
Length = 532
Score = 112 bits (240), Expect(2) = 2e-047
Identities = 48/60 (80%), Positives = 54/60 (90%)
Frame = -1 / +1
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
E+GRAQGTYTFADQ TFGLLM M+FVFTAG++KGS L+I GR EVLS VREMSIVGG+GK
Sbjct: 352 EIGRAQGTYTFADQATFGLLMNMNFVFTAGDYKGSGLTIYGRNEVLSAVREMSIVGGTGK 531
Score = 97.3 bits (206), Expect(2) = 2e-047
Identities = 38/52 (73%), Positives = 47/52 (90%)
Frame = -1 / +1
Query: 611 DSGFTTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
D G T FK+++HD++AGTSPTAIRIAQ A++N+SST FGA+VAIDDPLTTGP
Sbjct: 166 DDGLTKFKLYWHDVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGP 321
Score = 72.1 bits (151), Expect(2) = 2e-027
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +1 / -3
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVVNP 606
GPVVSGSSMAT APK V+E+L A CA+R+AVGLVPA+ S + +L +V P
Sbjct: 320 GPVVSGSSMATTAPKKVEELLVDAACAIRIAVGLVPASTSCQYSLNLVRP 171
Score = 71.6 bits (150), Expect(2) = 2e-027
Identities = 33/59 (55%), Positives = 35/59 (59%)
Frame = +1 / -3
Query: 262 PLPPTMXXXXXXXXXXXXPRMESVLPLCSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
P+PPTM P M LPL SPAV TK + MRRP V WSANV*VP ARP S
Sbjct: 527 PVPPTMLISLTADSTSLRP*MVRPLPL*SPAVKTKFMFMRRPKVAWSANV*VPCARPIS 351
>gb|BG343276.2|BG343276 HVSMEg0005E17f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005E17f, mRNA sequence
Length = 890
Score = 110 bits (234), Expect(2) = 2e-044
Identities = 49/66 (74%), Positives = 56/66 (84%)
Frame = -1 / +1
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI G+G+
Sbjct: 292 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSIHRGTGQ 471
Query: 257 FRMARG 240
M+ G
Sbjct: 472 DAMSGG 489
Score = 90.0 bits (190), Expect(2) = 2e-044
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -1 / +1
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
T FKV+FHD++AG SPTAIRIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 118 TKFKVYFHDVLAGKSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTSP 261
Score = 71.2 bits (149), Expect(2) = 5e-027
Identities = 33/66 (50%), Positives = 38/66 (57%)
Frame = +1 / -1
Query: 241 PRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLCSPAVNTKSITMRRPNVCWSANV*VP 420
P + + P+P M P M +LPL SPAVNTK + MR P V WSANV*VP
Sbjct: 488 PPLIASCPVPRCMLISLTAESTSLRP*MVRLLPLYSPAVNTKFMFMRSPKVAWSANV*VP 309
Query: 421 WARPTS 438
ARPTS
Sbjct: 308 CARPTS 291
Score = 70.7 bits (148), Expect(2) = 5e-027
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +1 / -1
Query: 457 GPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVGLVPATMSWKNTLKVV 600
G VVSGSSMAT APK V+E+L A CA+R+AVGL PA SWK TL +V
Sbjct: 260 GLVVSGSSMATTAPKKVEELLVDAACAIRIAVGLFPARTSWKYTLNLV 117
>gb|AL510732.1|AL510732 AL510732 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05N10u 3',
mRNA sequence
Length = 579
Score = 172 bits (370), Expect = 4e-042
Identities = 74/92 (80%), Positives = 83/92 (90%)
Frame = -1 / -1
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
EVGRAQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GK
Sbjct: 438 EVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGK 259
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
FRMARGYVQA T+DSG SGETVV+YTV V+A
Sbjct: 258 FRMARGYVQASTVDSGANSGETVVEYTVYVKA 163
Score = 127 bits (273), Expect = 1e-028
Identities = 58/92 (63%), Positives = 62/92 (67%)
Frame = +1 / +2
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSP+L PES V AWT PRAMRN P+PP M P M +LPL
Sbjct: 164 ALT*TVYSTTVSPELAPESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPL 343
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAVNTK + MR P V WSANV*VP ARPTS
Sbjct: 344 YSPAVNTKFMFMRSPKVAWSANV*VPCARPTS 439
>gb|AL502849.1|AL502849 AL502849 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08O16u 3', mRNA sequence
Length = 591
Score = 163 bits (351), Expect = 2e-039
Identities = 71/93 (76%), Positives = 80/93 (86%)
Frame = -1 / -3
Query: 440 TEVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSG 261
T AQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+G
Sbjct: 565 TRWAAAQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTG 386
Query: 260 KFRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
KFRMARGYVQA T+DSG SGETVV+YTV V+A
Sbjct: 385 KFRMARGYVQASTVDSGANSGETVVEYTVYVKA 287
Score = 117 bits (250), Expect = 2e-025
Identities = 53/88 (60%), Positives = 57/88 (64%)
Frame = +1 / +3
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSP+L PES V AWT PRAMRN P+PP M P M +LPL
Sbjct: 288 ALTYTVYSTTVSPELAPESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPL 467
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VPWA 426
SPAVNTK + MR P V WSANV VP A
Sbjct: 468 YSPAVNTKFMFMRSPKVAWSANVXVPCA 551
>gb|BI958849.1|BI958849 HVSMEn0016O03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016O03f, mRNA sequence
Length = 668
Score = 163 bits (350), Expect = 3e-039
Identities = 70/92 (76%), Positives = 80/92 (86%)
Frame = -1 / -1
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGK 258
E+GRAQG YTFADQ T GLLM M+ VFTAG++KGS L+I GR EVLS VREMSIVGG+GK
Sbjct: 413 EIGRAQGPYTFADQATLGLLMNMNLVFTAGDYKGSGLTIYGRNEVLSPVREMSIVGGTGK 234
Query: 257 FRMARGYVQAHTIDSGFKSGETVVQYTVNVRA 162
FRMARGYV+A T+DSG KSGETVV+YTV V+A
Sbjct: 233 FRMARGYVEARTMDSGAKSGETVVEYTVYVKA 138
Score = 119 bits (254), Expect = 4e-026
Identities = 58/92 (63%), Positives = 60/92 (65%)
Frame = +1 / +1
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSPDL PESMV A T PRAMRN P+PPTM P M LPL
Sbjct: 139 ALT*TVYSTTVSPDLAPESMVRAST*PRAMRNLPVPPTMLISLTGDSTSLRP*MVRPLPL 318
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VPWARPTS 438
SPAV TK + MRRP V WSANV* P ARP S
Sbjct: 319 *SPAVKTKFMFMRRPKVAWSANV*GPCARPIS 414
>gb|BM444860.1|BM444860 EBem09_SQ006_L09_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_L09 5', mRNA sequence
Length = 327
Score = 163 bits (350), Expect = 3e-039
Identities = 70/88 (79%), Positives = 79/88 (89%)
Frame = -1 / +1
Query: 425 AQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGKFRMA 246
AQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GKFRMA
Sbjct: 1 AQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGKFRMA 180
Query: 245 RGYVQAHTIDSGFKSGETVVQYTVNVRA 162
RGYVQA T+DSG SGETVV+YTV V+A
Sbjct: 181 RGYVQASTVDSGANSGETVVEYTVYVKA 264
Score = 118 bits (253), Expect = 6e-026
Identities = 53/86 (61%), Positives = 57/86 (66%)
Frame = +1 / -2
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSP+L PES V AWT PRAMRN P+PP M P M +LPL
Sbjct: 263 ALTYTVYSTTVSPELAPESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPL 84
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VP 420
SPAVNTK + MR P V WSANV*VP
Sbjct: 83 YSPAVNTKFMFMRSPKVAWSANV*VP 6
>gb|CV056595.1|CV056595 BNEL19E4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL19E4 5' similar to unknown
protein, mRNA sequence
Length = 359
Score = 163 bits (350), Expect = 3e-039
Identities = 70/88 (79%), Positives = 79/88 (89%)
Frame = -1 / +1
Query: 425 AQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGKFRMA 246
AQGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GKFRMA
Sbjct: 1 AQGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGKFRMA 180
Query: 245 RGYVQAHTIDSGFKSGETVVQYTVNVRA 162
RGYVQA T+DSG SGETVV+YTV V+A
Sbjct: 181 RGYVQASTVDSGANSGETVVEYTVYVKA 264
Score = 118 bits (253), Expect = 6e-026
Identities = 53/86 (61%), Positives = 57/86 (66%)
Frame = +1 / -1
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSP+L PES V AWT PRAMRN P+PP M P M +LPL
Sbjct: 263 ALTYTVYSTTVSPELAPESTVLAWT*PRAMRNLPVPPRMLISLTAESTSLRP*MVRLLPL 84
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VP 420
SPAVNTK + MR P V WSANV*VP
Sbjct: 83 YSPAVNTKFMFMRSPKVAWSANV*VP 6
>gb|CV054743.1|CV054743 BNEL112g9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112g9 5' similar to hypothetical
protein T10K17.300 - Arabidopsis thaliana, mRNA sequence
Length = 360
Score = 154 bits (331), Expect = 1e-036
Identities = 67/87 (77%), Positives = 76/87 (87%)
Frame = -1 / +1
Query: 422 QGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGKFRMAR 243
QGTYTFADQ TFGLLM M+FVFTAGE+KGS+L+I GR EVLS VREMSI+GG+GK RMAR
Sbjct: 4 QGTYTFADQATFGLLMNMNFVFTAGEYKGSSLTIYGRNEVLSAVREMSILGGTGKVRMAR 183
Query: 242 GYVQAHTIDSGFKSGETVVQYTVNVRA 162
GY+QA T DSG SGETVV+YTV V+A
Sbjct: 184 GYIQASTGDSGANSGETVVEYTVYVKA 264
Score = 104 bits (221), Expect = 2e-021
Identities = 49/86 (56%), Positives = 54/86 (62%)
Frame = +1 / -2
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSP+L PES V A PRA+R P+PP M P M +LPL
Sbjct: 263 ALTYTVYSTTVSPELAPESPVLA*M*PRAIRTLPVPPRMLISLTAESTSLRP*MVRLLPL 84
Query: 343 CSPAVNTKSITMRRPNVCWSANV*VP 420
SPAVNTK + MR P V WSANV*VP
Sbjct: 83 YSPAVNTKFMFMRSPKVAWSANV*VP 6
>gb|BQ760080.1|BQ760080 EBpi07_SQ003_K06_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_K06 5', mRNA sequence
Length = 462
Score = 97.3 bits (206), Expect(3) = 2e-036
Identities = 38/52 (73%), Positives = 47/52 (90%)
Frame = -1 / +2
Query: 611 DSGFTTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
D G T FK+++HD++AGTSPTAIRIAQ A++N+SST FGA+VAIDDPLTTGP
Sbjct: 98 DDGLTKFKLYWHDVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGP 253
Score = 59.3 bits (123), Expect(3) = 2e-036
Identities = 25/40 (62%), Positives = 29/40 (72%)
Frame = -1 / +2
Query: 452 RAAGTEVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGS 333
R + E+GRAQGTYTFADQ TFGLLM M+FV G K +
Sbjct: 269 RQSKDEIGRAQGTYTFADQATFGLLMNMNFVLPPGTTKAA 388
Score = 35.0 bits (70), Expect(3) = 2e-036
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -1 / +2
Query: 308 EVLSDVREMSIVGGSGK 258
EVLS VREMSIVGG+GK
Sbjct: 410 EVLSAVREMSIVGGTGK 460
>gb|AJ433789.1|AJ433789 AJ433789 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200050C10F1, mRNA sequence
Length = 408
Score = 153 bits (328), Expect = 3e-036
Identities = 66/84 (78%), Positives = 75/84 (89%)
Frame = -1 / +1
Query: 413 YTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGKFRMARGYV 234
YTFADQ TFGLLM M+FVFTAG++KGS L+I GR EVLS VREMSIVGG+GKFRMARGYV
Sbjct: 1 YTFADQATFGLLMNMNFVFTAGDYKGSGLTIYGRNEVLSAVREMSIVGGTGKFRMARGYV 180
Query: 233 QAHTIDSGFKSGETVVQYTVNVRA 162
+A T+DSG KSGETVV+YTV V+A
Sbjct: 181 EARTMDSGAKSGETVVEYTVYVKA 252
Score = 109 bits (233), Expect = 3e-023
Identities = 52/83 (62%), Positives = 54/83 (65%)
Frame = +1 / -2
Query: 163 ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPL 342
ALT TVY TTVSPDL PESMV A T PRAMRN P+PPTM P M LPL
Sbjct: 251 ALT*TVYSTTVSPDLAPESMVRAST*PRAMRNLPVPPTMLISLTADSTSLRP*MVRPLPL 72
Query: 343 CSPAVNTKSITMRRPNVCWSANV 411
SPAV TK + MRRP V WSANV
Sbjct: 71 *SPAVKTKFMFMRRPKVAWSANV 3
>gb|CA026158.1|CA026158 HZ55B18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55B18
5-PRIME, mRNA sequence
Length = 333
Score = 95.0 bits (201), Expect(2) = 7e-029
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = -1 / +2
Query: 611 DSGFTTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
D G T FK+++HD++AGTSPTAIRIAQ A++N+SST FGA+VA DDPLTTGP
Sbjct: 71 DDGLTKFKLYWHDVLAGTSPTAIRIAQAASTNSSSTFFGAVVAXDDPLTTGP 226
Score = 53.3 bits (110), Expect(2) = 7e-029
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = -1 / +2
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDF 363
E+GRAQGTYTFADQ TFGLLM M+F
Sbjct: 257 EIGRAQGTYTFADQATFGLLMNMNF 331
>gb|CA029181.1|CA029181 HZ64H06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64H06
5-PRIME, mRNA sequence
Length = 369
Score = 90.0 bits (190), Expect(2) = 2e-027
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -1 / +2
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGP 456
T FKV+FHD++AG SPTAIRIAQ A++N+SST FGA+VAIDDPLTT P
Sbjct: 119 TKFKVYFHDVLAGKSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTSP 262
Score = 53.8 bits (111), Expect(2) = 2e-027
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -1 / +2
Query: 437 EVGRAQGTYTFADQQTFGLLMVMDF 363
EVGRAQGTYTFADQ TFGLLM M+F
Sbjct: 293 EVGRAQGTYTFADQATFGLLMNMNF 367
>gb|AV922971.1|AV922971 AV922971 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3d02 5', mRNA sequence
Length = 653
Score = 93.2 bits (197), Expect(2) = 5e-024
Identities = 36/81 (44%), Positives = 54/81 (66%)
Frame = -1 / +2
Query: 476 DPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLS 297
D T + VGRAQG Y + Q L+M ++F+ T G++ GSTL+++GR ++++
Sbjct: 203 DDALTETSSPTSAPVGRAQGFYMMSSQSGMVLMMCVNFLLTTGDYNGSTLAVIGRDDIMT 382
Query: 296 DVREMSIVGGSGKFRMARGYV 234
RE+S+VGG+GKFRMA GYV
Sbjct: 383 TTRELSVVGGTGKFRMATGYV 445
Score = 38.6 bits (78), Expect(2) = 5e-024
Identities = 13/31 (41%), Positives = 24/31 (77%)
Frame = -1 / +2
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSS 507
T F HD+V+G++PTA++I +G AS++++
Sbjct: 74 THLHFFLHDVVSGSNPTAVQIIKGPASSSNA 166
>gb|CA028103.1|CA028103 HZ61A03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61A03
5-PRIME, mRNA sequence
Length = 627
Score = 111 bits (236), Expect = 1e-023
Identities = 52/145 (35%), Positives = 80/145 (55%)
Frame = -1 / +2
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGPTRAAGTEVGRAQ 420
T +V++HD+V+G + A S+ +S + V + D T +GRAQ
Sbjct: 182 TRLRVYWHDVVSGGPNARVVQVAQAPSSNASATGFGTVLVIDDPLTEGPNLTSRLLGRAQ 361
Query: 419 GTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGKFRMARG 240
G Y A + + LLM M+FVF G + GS+++I+G + VREM +VGG+G FR ARG
Sbjct: 362 GIYVSAGKDSLSLLMAMNFVFVDGAYNGSSIAIIGPNQADRAVREMPVVGGTGIFRFARG 541
Query: 239 YVQAHTIDSGFKSGETVVQYTVNVR 165
Y Q T K+G+ V+Y +++R
Sbjct: 542 YCQLRTHWFDAKTGDATVEYKIHLR 616
>gb|BI958606.1|BI958606 HVSMEn0015N17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015N17f, mRNA sequence
Length = 646
Score = 90.4 bits (191), Expect(2) = 4e-023
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = -1 / +1
Query: 476 DPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLS 297
D T + VGRAQG Y + Q L+M ++F+ T G++ GSTL+++GR ++++
Sbjct: 196 DDALTETSSPTSAPVGRAQGFYMMSSQSGMVLMMCVNFLLTTGDYNGSTLAVIGRDDIMT 375
Query: 296 DVREMSIVGGSGKFRMARGYV 234
RE+S+VGG+GKF MA GYV
Sbjct: 376 TTRELSVVGGTGKFXMATGYV 438
Score = 38.6 bits (78), Expect(2) = 4e-023
Identities = 13/31 (41%), Positives = 24/31 (77%)
Frame = -1 / +1
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSS 507
T F HD+V+G++PTA++I +G AS++++
Sbjct: 67 THLHFFLHDVVSGSNPTAVQIIKGPASSSNA 159
>gb|BF065894.2|BF065894 HV_CEb0014E14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0014E14f, mRNA sequence
Length = 948
Score = 108 bits (231), Expect = 7e-023
Identities = 51/143 (35%), Positives = 78/143 (54%)
Frame = -1 / +3
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGPTRAAGTEVGRAQ 420
T +V++HD+V+G + A S+ +S + V + D T +GRAQ
Sbjct: 177 TRLRVYWHDVVSGGPNARVVQVAQAPSSNASATGFGTVLVIDDPLTEGPNLTSRLLGRAQ 356
Query: 419 GTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGKFRMARG 240
G Y A + + LLM M+FVF G + GS+++I+G + VREM +VGG+G FR ARG
Sbjct: 357 GIYVSAGKDSLSLLMAMNFVFVDGAYNGSSIAIIGPNQADRAVREMPVVGGTGVFRFARG 536
Query: 239 YVQAHTIDSGFKSGETVVQYTVN 171
Y Q T K+G+ V+Y ++
Sbjct: 537 YCQLRTHWFDAKTGDATVEYKIH 605
>gb|BG300692.2|BG300692 HVSMEb0018A09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018A09f, mRNA sequence
Length = 611
Score = 106 bits (227), Expect = 2e-022
Identities = 49/100 (49%), Positives = 60/100 (60%)
Frame = -1 / +1
Query: 521 SNTSSTSFGAMVAIDDPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMDFVFTAGEH 342
+N SS +F MV + D T VGRAQG Y ADQ G L M+ V T+G +
Sbjct: 151 ANPSSPTFFGMVNVMDDPLTEGPEPGSAAVGRAQGLYMGADQAQLGFLQTMNLVLTSGPY 330
Query: 341 KGSTLSILGRXEVLSDVREMSIVGGSGKFRMARGYVQAHT 222
GSTL++LGR L+DVREM +VGG+G FR A GY QA T
Sbjct: 331 NGSTLAVLGRNCPLTDVREMPVVGGTGAFRFASGYAQART 450
>gb|BI959140.1|BI959140 HVSMEn0018F14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F14f, mRNA sequence
Length = 645
Score = 82.6 bits (174), Expect(2) = 7e-021
Identities = 32/85 (37%), Positives = 52/85 (61%)
Frame = -1 / +2
Query: 476 DPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLS 297
D T + VGRAQG Y + Q L+M ++F+ T G++ GSTL+++GR ++++
Sbjct: 203 DDALTETSSPTSAPVGRAQGFYMMSSQSGMVLMMCVNFLLTTGDYNGSTLAVIGRDDIMT 382
Query: 296 DVREMSIVGGSGKFRMARGYVQAHT 222
RE+S+VGG+GK+ MA + T
Sbjct: 383 TTRELSVVGGTGKYFMATANINCKT 457
Score = 38.6 bits (78), Expect(2) = 7e-021
Identities = 13/31 (41%), Positives = 24/31 (77%)
Frame = -1 / +2
Query: 599 TTFKVFFHDIVAGTSPTAIRIAQGAASNTSS 507
T F HD+V+G++PTA++I +G AS++++
Sbjct: 74 THLHFFLHDVVSGSNPTAVQIIKGPASSSNA 166
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 504,699,913
Number of Sequences: 312970
Number of extensions: 6881027
Number of successful extensions: 57442
Number of sequences better than 1.0e-020: 55
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 17928239901
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)