TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276201.2.1
(1827 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF539980.1| Hordeum vulgare subsp. vulgare anther endoxy... 329 e-141
gb|CB882318.1|CB882318 HL01I11w HL Hordeum vulgare subsp. v... 177 1e-073
gb|CA017926.1|CA017926 HV06N12r HV Hordeum vulgare subsp. v... 237 1e-061
gb|BQ471249.1|BQ471249 HV01N07T HV Hordeum vulgare subsp. v... 223 2e-057
gb|AF287731.1|AF287731 Hordeum vulgare clone pFL834 1,4-bet... 144 5e-052
gb|AF287723.1|AF287723 Hordeum vulgare clone pFL400 1,4-bet... 144 5e-052
gb|U59312.1|HVU59312 Hordeum vulgare (1,4)-beta-xylan endoh... 143 2e-051
emb|AJ849364.1| Hordeum vulgare x-I gene for endo-1,4-beta-... 144 2e-049
gb|AF287726.1|AF287726 Hordeum vulgare clone pFL699 1,4-bet... 141 1e-048
gb|CA019576.1|CA019576 HV12G22r HV Hordeum vulgare subsp. v... 191 1e-047
emb|AJ849366.1| Hordeum vulgare x-II gene for endo-1,4-beta... 135 5e-046
gb|U59313.1|HVU59313 Hordeum vulgare (1,4)-beta-xylan endoh... 135 5e-046
gb|CA018231.1|CA018231 HV08A09r HV Hordeum vulgare subsp. v... 157 1e-040
gb|BQ740096.1|BQ740096 HC05F06 HC Hordeum vulgare subsp. vu... 127 4e-031
gb|CA015721.1|CA015721 HV12G22u HV Hordeum vulgare subsp. v... 131 1e-029
gb|CB876721.1|CB876721 HP02C22T HP Hordeum vulgare subsp. v... 121 3e-028
>gb|AF539980.1| Hordeum vulgare subsp. vulgare anther endoxylanase mRNA, partial cds
Length = 1169
Score = 329 bits (713), Expect(2) = e-141
Identities = 131/195 (67%), Positives = 157/195 (80%)
Frame = +2 / +1
Query: 554 ENEMKWYSTEWTQNHEDYRVPDAMMNLMRKYKIKVRGHNVFWDDQNSQMQWVKPLNLAQL 733
ENEMKWYSTEW +N EDY VPDAM+ L +++ IKVRGHNVFWD N QM WV PL+ +L
Sbjct: 1 ENEMKWYSTEWKRNREDYSVPDAMLALAQRHGIKVRGHNVFWDTNNMQMAWVNPLSADEL 180
Query: 734 KAAMQKRLKSVVSPYAGKVIHWDVVNENLHFNFFETKLGPMASAQIYQQVGQLDRNAILF 913
KAAMQKRL S+V+ YAGKVI WDVVNENLH F+E++LGP SA++YQQV ++D NA LF
Sbjct: 181 KAAMQKRLSSLVTRYAGKVIAWDVVNENLHGQFYESRLGPNVSAELYQQVAKIDTNATLF 360
Query: 914 MNEFNTLEQPGDPNPVPAKYVAKMNQIRGYAGNGGLKLGVGLESHFSTPNIPYMRSSLDT 1093
MNE++TLE D + +KY AKM QIR Y GN G+KL VGLESHF TPNIPYMR++LD
Sbjct: 361 MNEYDTLEWALDVTAMASKYAAKMEQIRSYPGNDGIKLAVGLESHFETPNIPYMRATLDM 540
Query: 1094 LAKLKLPMWLTEVDV 1138
LA+LK+P+WLTEVDV
Sbjct: 541 LAQLKVPIWLTEVDV 585
Score = 193 bits (417), Expect(2) = e-141
Identities = 73/117 (62%), Positives = 94/117 (80%)
Frame = +2 / +1
Query: 1148 PNQVKYLEQVLREGFAHPNVDGIVMWAAWHARGCYVMCLTDNSFKNLPVGDLVDKLIAEW 1327
P QV+YLE VLREG+ HPNV+G+V+WAAWH GC+VMCLTDNSF NLP G++VDKLI EW
Sbjct: 601 PYQVEYLEDVLREGYGHPNVEGMVLWAAWHKHGCWVMCLTDNSFTNLPTGNVVDKLIDEW 780
Query: 1328 KTHRASATTDHNGAVELHLPLGDFKFTVSHPSLKAAAVQTMTVDNSASASQHTINVK 1498
KTH +ATTD +G EL L G+++FTV+HPSL++ T+TVD S+SA +H I++K
Sbjct: 781 KTHPVAATTDAHGVAELDLVHGEYRFTVTHPSLESPMAHTLTVDASSSALEHAIDIK 951
Score = 157 bits (337), Expect(3) = 6e-084
Identities = 82/143 (57%), Positives = 89/143 (62%)
Frame = -1 / -1
Query: 984 ILATYLAGTGLGSPGCSSVLNSFMNRMALRSSCPTCW*ICADAMGPSFVSKKLKCRFSFT 805
ILA YL + S SSV SFMN +A S TCW AD +GPS S RFS T
Sbjct: 431 ILAAYLLAMAVTSKAHSSVSYSFMNSVAFVSILATCWYSSADTLGPSRDS*NCPWRFSLT 252
Query: 804 TSQWMTLPA*GDTTDLSRFCMAALSCARLRGFTHCICEFWSSQNTLCPRTLILYLRIRFI 625
TSQ +TLPA* T +LSRFCMAALS + L GFTH IC SQ TL PRTL+ R
Sbjct: 251 TSQAITLPA*RVTRELSRFCMAALSSSALSGFTHAICMLLVSQKTLWPRTLMPCRWARAS 72
Query: 624 MASGTR*SSWFWVHSVLYHFISF 556
MASGT *SS F HSVLYHFISF
Sbjct: 71 MASGTL*SSRFRFHSVLYHFISF 3
Score = 155 bits (333), Expect(3) = 2e-058
Identities = 74/146 (50%), Positives = 89/146 (60%)
Frame = +1 / +3
Query: 556 ERDEVVQHRVDPEP*GLPRSGRHDEPDAQVQDQGARAQRVLGRPELADAVGEAPQPCAAQ 735
ERDEVVQHRV+ EP GL R+GRH P + QG R QR+LG + AD VGE + AQ
Sbjct: 3 ERDEVVQHRVEAEPRGLQRAGRHAGPRPAARHQGPRPQRLLGHQQHADGVGEPAERRRAQ 182
Query: 736 GSHAEAAQVRRVTLRRQGHPLGRGEREPALQLLRDEAGPHGVGTDLPAGGAAGPQCHPIH 915
G HAEAAQ+ R LRRQG LGR +REP +LR A VG +PAGG + H +H
Sbjct: 183 GRHAEAAQLPRDALRRQGDRLGRCQREPPRAVLRVPARSQRVGGAVPAGGQDRHERHAVH 362
Query: 916 ERIQHAGAARRSQPCARQVRGQDEPD 993
ER++HAG +QVR QD D
Sbjct: 363 ERVRHAGVGLGRDRHGQQVRRQDGAD 440
Score = 144 bits (310), Expect(3) = 6e-084
Identities = 69/112 (61%), Positives = 74/112 (66%)
Frame = -1 / -1
Query: 1497 LTLMVCWDADAELSTVMV*TAAAFKDGWLTVNLKSPRGRWSSTAPL*SVVADARCVFHSA 1318
L M C +AD + STV V DG +TVNL SP R SS P SVVA CVFHS+
Sbjct: 950 LMSMACSNADDDASTVKVCAMGDSSDG*VTVNLYSPCTRSSSATPWASVVAATGCVFHSS 771
Query: 1317 MSLSTRSPTGRFLKLLSVRHMT*QPLACHAAHMTMPSTLGWAKPSLSTCSRY 1162
MSLST P GRF+KLLSVRHMT P CHAA TMPSTLGW PSLST SRY
Sbjct: 770 MSLSTTLPVGRFVKLLSVRHMTQHPCLCHAAQSTMPSTLGWP*PSLSTSSRY 615
Score = 120 bits (256), Expect(5) = 6e-053
Identities = 61/118 (51%), Positives = 76/118 (64%)
Frame = -3 / -3
Query: 1504 LGLDVDGMLGRRRRIVDGHGLNSSGFQRWVAYGELKVA*GQVELHRPIVIGGGGRAVRLP 1325
L LDV GML RRR V + QR V++ E +A +V+L + + GGG VRLP
Sbjct: 957 LHLDVYGMLQRRR*RVHRQSMRHGRLQRRVSHREPVLAVHEVQLGHAVGVRGGGHGVRLP 778
Query: 1324 LGDELVDEVAHGEVLEAVVREAHDVAAPGMPRCPHDDAVDVGVGEAFPEHLLQVLDLV 1151
L DELVD+VA GE+ EAVVREAHD A+ +P P A+ VGV AFP+H+LQVL LV
Sbjct: 777 LVDELVDDVAGGEIREAVVREAHDPASVLVPCRPEHHALHVGVAVAFPQHVLQVLHLV 604
Score = 60.6 bits (126), Expect(3) = 2e-058
Identities = 29/67 (43%), Positives = 34/67 (50%)
Frame = +1 / +3
Query: 1222 VGSVACQGLLRHVPHGQQLQEXXXXXXXXXXXXXVEDAPRVRHHRSQWGGGAPPAPRRL* 1401
+G +A +L HVPHGQQL E VEDAPR RHH G A P RR+
Sbjct: 675 LGGMAQARMLGHVPHGQQLHESPHRQRRRQAHRRVEDAPRGRHHGRPRRGRAGPRARRVQ 854
Query: 1402 VHRKPPI 1422
VH P+
Sbjct: 855 VHGDSPV 875
Score = 50.1 bits (103), Expect(3) = 2e-058
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +1 / +3
Query: 1048 LQHTQHPVHEELAGHARQAEAAHVAHRGG 1134
L+ QHP+HE AGHAR A+ H+AHRGG
Sbjct: 495 LRDAQHPIHEGDAGHARAAQGPHLAHRGG 581
Score = 49.6 bits (102), Expect(3) = 6e-084
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = -3 / -3
Query: 1138 DIHLGEPHGQLQLGERVQRAPHVRDVG 1058
D+HLGEP G L+L E VQR PHV DVG
Sbjct: 585 DVHLGEPDGDLELREHVQRRPHVWDVG 505
Score = 46.0 bits (94), Expect(5) = 6e-053
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = -3 / -3
Query: 652 DLVLAHQVHHGVRNAVVLMVLGPLGAVPLHLVL 554
D V + HGVR+AVVL V PLGAVPLHLVL
Sbjct: 99 DAVPLGEGQHGVRHAVVLAVPLPLGAVPLHLVL 1
Score = 41.4 bits (84), Expect(5) = 6e-053
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -1 / -1
Query: 1116 MGSFSLASVSSELLMYGMLGVLKW 1045
MG+ S AS+SS LMYGMLGV KW
Sbjct: 563 MGTLSCASMSSVALMYGMLGVSKW 492
Score = 38.6 bits (78), Expect(5) = 6e-053
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -3 / -3
Query: 793 DDLAGVG*HDGLEPLLHGCLEL 728
D LAGV H+G EPLLHG LEL
Sbjct: 240 DHLAGVARHEGAEPLLHGGLEL 175
Score = 37.3 bits (75), Expect(5) = 6e-053
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = -3 / -3
Query: 949 IAGLLQRVEFVHE*DGIAVQLPHLLVDLCRRHG 851
+ G LQRV VHE G+ V L HLLV L R G
Sbjct: 396 VQGPLQRVVLVHEQRGVRVDLGHLLVQLRRHVG 298
>gb|CB882318.1|CB882318 HL01I11w HL Hordeum vulgare subsp. vulgare cDNA clone HL01I11
3-PRIME, mRNA sequence
Length = 650
Score = 177 bits (380), Expect(3) = 1e-073
Identities = 68/115 (59%), Positives = 87/115 (75%)
Frame = +2 / +2
Query: 1052 STPNIPYMRSSLDTLAKLKLPMWLTEVDVVKSPNQVKYLEQVLREGFAHPNVDGIVMWAA 1231
+TPNIPY+R++LDTL++ +P+WLTE+DV P+Q +LEQVLRE ++HP V GIV+W A
Sbjct: 305 ATPNIPYVRAALDTLSQAGVPIWLTEIDVKPGPDQAHHLEQVLREVYSHPAVHGIVLWTA 484
Query: 1232 WHARGCYVMCLTDNSFKNLPVGDLVDKLIAEWKTHRASATTDHNGAVELHLPLGD 1396
WH +GCYVMCLTD++F NLPVGD VDKLIAEWKT D +G + L GD
Sbjct: 485 WHPQGCYVMCLTDDNFNNLPVGDTVDKLIAEWKTSSHVGVADADGHYDAELFHGD 649
Score = 117 bits (251), Expect(3) = 1e-073
Identities = 46/80 (57%), Positives = 63/80 (78%)
Frame = +2 / +2
Query: 758 KSVVSPYAGKVIHWDVVNENLHFNFFETKLGPMASAQIYQQVGQLDRNAILFMNEFNTLE 937
+SV+S YAGKVI WDVVNENLHF++FE K G ASA YQ+ +D A++ MN+FNTLE
Sbjct: 2 RSVMSRYAGKVIAWDVVNENLHFDYFEDKFGAGASAAFYQKAHGMDGGALMSMNDFNTLE 181
Query: 938 QPGDPNPVPAKYVAKMNQIR 997
QP D + +P+KY++K++QI+
Sbjct: 182 QPADQSGLPSKYLSKLSQIK 241
Score = 113 bits (241), Expect(2) = 7e-042
Identities = 56/103 (54%), Positives = 64/103 (62%)
Frame = -3 / -2
Query: 1366 PIVIGGGGRAVRLPLGDELVDEVAHGEVLEAVVREAHDVAAPGMPRCPHDDAVDVGVGEA 1187
P+ +G RLPLGDELVD VA GEV+E VV EAHDVAA +PR P DAV V
Sbjct: 619 PVGVGHADVRARLPLGDELVDRVADGEVVEVVVGEAHDVAALRVPRRPEHDAVHGRVRVH 440
Query: 1186 FPEHLLQVLDLVGALDDIHLGEPHGQLQLGERVQRAPHVRDVG 1058
PEHLLQV+ LV D+ L EP G L + V+R P V DVG
Sbjct: 439 LPEHLLQVVRLVRPRLDVDLREPDGHAGLRQGVERRPDVGDVG 311
Score = 109 bits (232), Expect(2) = 2e-026
Identities = 58/114 (50%), Positives = 62/114 (54%)
Frame = -1 / -3
Query: 1395 SPRGRWSSTAPL*SVVADARCVFHSAMSLSTRSPTGRFLKLLSVRHMT*QPLACHAAHMT 1216
SP +S P S VFHSAMSLST SPTGR LKL SVRHMT*QP CHA T
Sbjct: 648 SPWNSSAS*CPSASATPTCELVFHSAMSLSTVSPTGRLLKLSSVRHMT*QPCGCHAVQST 469
Query: 1215 MPSTLGWAKPSLSTCSRYXXXXXXXXXXXXXSHMGSFSLASVSSELLMYGMLGV 1054
MP T G SLSTCSR+ S MG+ + VSS GMLGV
Sbjct: 468 MPCTAGCEYTSLSTCSRWCAWSGPGLTSISVSQMGTPACDRVSSAART*GMLGV 307
Score = 79.0 bits (166), Expect(2) = 7e-042
Identities = 41/74 (55%), Positives = 44/74 (59%)
Frame = -1 / -3
Query: 981 LATYLAGTGLGSPGCSSVLNSFMNRMALRSSCPTCW*ICADAMGPSFVSKKLKCRFSFTT 802
L YL G L S GCSSVL SFM+ A S W* ADA P+ SK KCRFSFTT
Sbjct: 225 LLRYLLGRPLWSAGCSSVLKSFMDMSAPPSMPCAFW*KAADAPAPNLSSK*SKCRFSFTT 46
Query: 801 SQWMTLPA*GDTTD 760
S +TLPA D TD
Sbjct: 45 SHAITLPAYRDMTD 4
Score = 78.5 bits (165), Expect(4) = 1e-026
Identities = 38/74 (51%), Positives = 47/74 (63%)
Frame = +1 / +1
Query: 760 VRRVTLRRQGHPLGRGEREPALQLLRDEAGPHGVGTDLPAGGAAGPQCHPIHERIQHAGA 939
V V +RRQG +GRGEREPAL+LLR + VG LP G G + +HER+QHAGA
Sbjct: 4 VGHVAVRRQGDRVGRGEREPALRLLRGQVRGGRVGGLLPEGARHGRRRAHVHERLQHAGA 183
Query: 940 ARRSQPCARQVRGQ 981
ARR + +QV Q
Sbjct: 184 ARRPERPPQQVPQQ 225
Score = 37.3 bits (75), Expect(4) = 1e-026
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3 / +3
Query: 1128 RWMSSRAPTRSSTWSRCSGKXXXXXXXXXXXCGQRG 1235
R SSR TR +TWSRCSG+ G+RG
Sbjct: 381 RSTSSRGRTRRTTWSRCSGRCTRTRPCTASCSGRRG 488
Score = 33.1 bits (66), Expect(4) = 1e-026
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1 / +1
Query: 1231 VACQGLLRHVPHGQQLQEXXXXXXXXXXXXXVED 1332
VA GLLRHVPH +QLQ+ VED
Sbjct: 484 VAPAGLLRHVPHRRQLQQPPRRRHGRQAHRRVED 585
Score = 31.3 bits (62), Expect(2) = 2e-026
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -3 / -2
Query: 949 IAGLLQRVEFVHE*DGIAVQLPHLLVDLCRR 857
+ GLLQRVE VH + AV LLV+ RR
Sbjct: 193 VGGLLQRVEVVHGHERAAVHAVRLLVEGRRR 101
Score = 26.7 bits (52), Expect(4) = 1e-026
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1 / +1
Query: 1051 QHTQHPVHEELAGHARQAEAAHVAH 1125
+H QHP+ A H AH+AH
Sbjct: 304 RHAQHPLRPGGARHPVAGRRAHLAH 378
Score = 22.6 bits (43), Expect(3) = 1e-073
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +2 / +2
Query: 1016 GLKLGVGLESHF 1051
G+++ +GLE HF
Sbjct: 266 GVRMAIGLEGHF 301
>gb|CA017926.1|CA017926 HV06N12r HV Hordeum vulgare subsp. vulgare cDNA clone HV06N12
5-PRIME, mRNA sequence
Length = 500
Score = 237 bits (512), Expect = 1e-061
Identities = 94/163 (57%), Positives = 117/163 (71%)
Frame = +2 / +1
Query: 407 ANDKPMAHANVSIELLRLGFPFGNAITKEILGLPAYEKWFTSRFSVATFENEMKWYSTEW 586
A P+ A V + +R GFP G+A++ EI+ Y++WF RF+V TFENEMKWYSTEW
Sbjct: 10 AAGNPVPGARVHVRQVRSGFPLGSAMSHEIINNEKYQQWFAKRFTVTTFENEMKWYSTEW 189
Query: 587 TQNHEDYRVPDAMMNLMRKYKIKVRGHNVFWDDQNSQMQWVKPLNLAQLKAAMQKRLKSV 766
TQ HEDY VPDAM+ R + I VRGHNVFWDD ++Q+ WVK L+ QL+AA R+KSV
Sbjct: 190 TQGHEDYSVPDAMLRFARAHGIAVRGHNVFWDDPSTQLGWVKALSCDQLRAATAHRMKSV 369
Query: 767 VSPYAGKVIHWDVVNENLHFNFFETKLGPMASAQIYQQVGQLD 895
+S YAGKVI WDVVNENLHF++FE K G ASA YQ+ +D
Sbjct: 370 MSRYAGKVIAWDVVNENLHFDYFEDKFGAGASAAFYQKAHGMD 498
Score = 164 bits (353), Expect = 1e-039
Identities = 84/157 (53%), Positives = 96/157 (61%)
Frame = -1 / -1
Query: 876 W*ICADAMGPSFVSKKLKCRFSFTTSQWMTLPA*GDTTDLSRFCMAALSCARLRGFTHCI 697
W* ADA P+ SK KCRFSFTTS +TLPA D TD R+ +AA S ++LR TH
Sbjct: 479 W*KAADAPAPNLSSK*SKCRFSFTTSHAITLPAYRDMTDFIRWAVAARSWSQLRALTHPS 300
Query: 696 CEFWSSQNTLCPRTLILYLRIRFIMASGTR*SSWFWVHSVLYHFISFSKVATLKRDVNHF 517
C SSQNTLCPRT + + R +ASGT *SS VHSVLYHFISFSKV T+ R NH
Sbjct: 299 CVLGSSQNTLCPRTAMPWARANRSIASGTE*SSCPCVHSVLYHFISFSKVVTVNRLANHC 120
Query: 516 SYAGRPRISLVIALPNGKPRRRSSMLTLACAIGLSLA 406
Y IS +IA P+GKP R T A GL A
Sbjct: 119 WYFSLLMISWLIADPSGKPLRTCRTCTRAPGTGLPAA 9
Score = 132 bits (282), Expect = 8e-030
Identities = 71/149 (47%), Positives = 84/149 (56%)
Frame = +1 / +3
Query: 448 APPPRLPVRQRDHQGDPRPPGIREVVHVALQRGHLRERDEVVQHRVDPEP*GLPRSGRHD 627
A P RLP D D + I VV A+ HLRERDEVVQH VD GL R+ R
Sbjct: 51 AGPERLPAGVGDEPRDHQQREIPAVVRQAVHGDHLRERDEVVQHGVDAGARGLLRARRDA 230
Query: 628 EPDAQVQDQGARAQRVLGRPELADAVGEAPQPCAAQGSHAEAAQVRRVTLRRQGHPLGRG 807
A+ + +GARAQRVLGRP+ A VG+ PQ A H +V V +RRQG +GRG
Sbjct: 231 PVRARPRHRGARAQRVLGRPQHAAGVGQGPQLRPAPRRHRPPDEVGHVAVRRQGDRVGRG 410
Query: 808 EREPALQLLRDEAGPHGVGTDLPAGGAAG 894
EREPAL+LLR + VG LP G G
Sbjct: 411 EREPALRLLRGQVRGGRVGGLLPEGARHG 497
>gb|BQ471249.1|BQ471249 HV01N07T HV Hordeum vulgare subsp. vulgare cDNA clone HV01N07
5-PRIME, mRNA sequence
Length = 449
Score = 223 bits (482), Expect = 2e-057
Identities = 87/146 (59%), Positives = 108/146 (73%)
Frame = +2 / +2
Query: 407 ANDKPMAHANVSIELLRLGFPFGNAITKEILGLPAYEKWFTSRFSVATFENEMKWYSTEW 586
A P+ A V + +R GFP G+A++ EI+ Y++WF RF+V TFENEMKWYSTEW
Sbjct: 11 AAGNPVPGARVHVRQVRSGFPLGSAMSHEIINNEKYQQWFAKRFTVTTFENEMKWYSTEW 190
Query: 587 TQNHEDYRVPDAMMNLMRKYKIKVRGHNVFWDDQNSQMQWVKPLNLAQLKAAMQKRLKSV 766
TQ HEDY VPDAM+ R + I VRGHNVFWDD ++Q+ WVK L+ QL+AA R+KSV
Sbjct: 191 TQGHEDYSVPDAMLRFARAHGIAVRGHNVFWDDPSTQLGWVKALSCDQLRAATAHRMKSV 370
Query: 767 VSPYAGKVIHWDVVNENLHFNFFETK 844
+S YAGKVI WDVVNENLHF++FE K
Sbjct: 371 MSRYAGKVIAWDVVNENLHFDYFEDK 448
Score = 152 bits (326), Expect = 7e-036
Identities = 78/144 (54%), Positives = 89/144 (61%)
Frame = -1 / -3
Query: 837 SKKLKCRFSFTTSQWMTLPA*GDTTDLSRFCMAALSCARLRGFTHCICEFWSSQNTLCPR 658
SK KCRFSFTTS +TLPA D TD R+ +AA S ++LR TH C SSQNTLCPR
Sbjct: 441 SK*SKCRFSFTTSHAITLPAYRDMTDFIRWAVAARSWSQLRALTHPSCVLGSSQNTLCPR 262
Query: 657 TLILYLRIRFIMASGTR*SSWFWVHSVLYHFISFSKVATLKRDVNHFSYAGRPRISLVIA 478
T + + R +ASGT *SS VHSVLYHFISFSKV T+ R NH Y IS +IA
Sbjct: 261 TAMPWARANRSIASGTE*SSCPCVHSVLYHFISFSKVVTVNRLANHCWYFSLLMISWLIA 82
Query: 477 LPNGKPRRRSSMLTLACAIGLSLA 406
P+GKP R T A GL A
Sbjct: 81 DPSGKPLRTCRTCTRAPGTGLPAA 10
Score = 127 bits (273), Expect = 1e-028
Identities = 69/149 (46%), Positives = 82/149 (55%)
Frame = +1 / +1
Query: 397 RHGRQRQADGACQREHRAPPPRLPVRQRDHQGDPRPPGIREVVHVALQRGHLRERDEVVQ 576
RH RQ A P RLP D D + I VV A+ HLRERDEVVQ
Sbjct: 1 RHEGGRQPGAGRAGARPAGPERLPAGVGDEPRDHQQREIPAVVRQAVHGDHLRERDEVVQ 180
Query: 577 HRVDPEP*GLPRSGRHDEPDAQVQDQGARAQRVLGRPELADAVGEAPQPCAAQGSHAEAA 756
H VD GL R+ R A+ + +GARAQRVLGRP+ A VG+ PQ A H
Sbjct: 181 HGVDAGARGLLRARRDAPVRARPRHRGARAQRVLGRPQHAAGVGQGPQLRPAPRRHRPPD 360
Query: 757 QVRRVTLRRQGHPLGRGEREPALQLLRDE 843
+V V +RRQG +GRGEREPAL+LLR +
Sbjct: 361 EVGHVAVRRQGDRVGRGEREPALRLLRGQ 447
>gb|AF287731.1|AF287731 Hordeum vulgare clone pFL834 1,4-beta-D xylan xylanohydrolase mRNA,
complete cds
Length = 1951
Score = 144 bits (309), Expect(5) = 5e-052
Identities = 64/142 (45%), Positives = 83/142 (58%)
Frame = +2 / +1
Query: 425 AHANVSIELLRLGFPFGNAITKEILGLPAYEKWFTSRFSVATFENEMKWYSTEWTQNHED 604
A A+V + L FPFG I ++ PA+ +FT+ F A FENE+KWY TE Q +
Sbjct: 682 AAASVRVVQLDNAFPFGTCINTSVIQKPAFLDFFTNHFDWAVFENELKWYHTEVQQGQLN 861
Query: 605 YRVPDAMMNLMRKYKIKVRGHNVFWDDQNSQMQWVKPLNLAQLKAAMQKRLKSVVSPYAG 784
Y DA++ + VRGH VFW QWVK LN QL++AMQ RL+ +VS YAG
Sbjct: 862 YADADALLAFCDRLGKTVRGHCVFWSVDGDVQQWVKNLNKDQLRSAMQSRLEGLVSRYAG 1041
Query: 785 KVIHWDVVNENLHFNFFETKLG 850
+ H+DV NE LH FF +LG
Sbjct: 1042 RFKHYDVNNEMLHGRFFRDRLG 1107
Score = 43.7 bits (89), Expect(5) = 5e-052
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2 / +1
Query: 1013 GGLKLGVGLESHFSTPNIPYMRSSLDTLAKLKLPMWLTEVDV 1138
G + G+GL+ H P + ++LD LAK +P+W TE+DV
Sbjct: 1261 GAVVRGIGLQGHVQNPVGEVICAALDRLAKTGVPIWFTELDV 1386
Score = 39.1 bits (79), Expect(5) = 5e-052
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2 / +1
Query: 1154 QVKYLEQVLREGFAHPNVDGIVMW 1225
+ K LE VLRE +AHP V+GIV W
Sbjct: 1408 RAKDLEVVLREAYAHPAVEGIVFW 1479
Score = 26.7 bits (52), Expect(5) = 5e-052
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +2 / +1
Query: 164 NGERVIAGAIVAQSGCWSMLKGGMTAYSSGPAEIYFESHAPVDIWVDSVSLQPFTFD 334
N V GA+ A+ G WS + G + + + AP + V + L+ + D
Sbjct: 412 NETLVECGAVCAKEGGWSEIMGAFRLRTEPRSAAVYVHGAPAGVDVKVMDLRVYPVD 582
Score = 26.3 bits (51), Expect(5) = 5e-052
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1 / +3
Query: 862 GTDLPAGGAAGPQCHPIHERIQ 927
G + GGAAGP + +R+Q
Sbjct: 1122 GVHVQGGGAAGPGARALRQRLQ 1187
>gb|AF287723.1|AF287723 Hordeum vulgare clone pFL400 1,4-beta-D xylan xylanohydrolase mRNA,
partial cds
Length = 1691
Score = 144 bits (309), Expect(5) = 5e-052
Identities = 64/142 (45%), Positives = 83/142 (58%)
Frame = +2 / +2
Query: 425 AHANVSIELLRLGFPFGNAITKEILGLPAYEKWFTSRFSVATFENEMKWYSTEWTQNHED 604
A A+V + L FPFG I ++ PA+ +FT+ F A FENE+KWY TE Q +
Sbjct: 422 AAASVRVVQLDNAFPFGTCINTSVIQKPAFLDFFTNHFDWAVFENELKWYHTEVQQGQLN 601
Query: 605 YRVPDAMMNLMRKYKIKVRGHNVFWDDQNSQMQWVKPLNLAQLKAAMQKRLKSVVSPYAG 784
Y DA++ + VRGH VFW QWVK LN QL++AMQ RL+ +VS YAG
Sbjct: 602 YADADALLAFCDRLGKTVRGHCVFWSVDGDVQQWVKNLNKDQLRSAMQSRLEGLVSRYAG 781
Query: 785 KVIHWDVVNENLHFNFFETKLG 850
+ H+DV NE LH FF +LG
Sbjct: 782 RFKHYDVNNEMLHGRFFRDRLG 847
Score = 43.7 bits (89), Expect(5) = 5e-052
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2 / +2
Query: 1013 GGLKLGVGLESHFSTPNIPYMRSSLDTLAKLKLPMWLTEVDV 1138
G + G+GL+ H P + ++LD LAK +P+W TE+DV
Sbjct: 1001 GAVVRGIGLQGHVQNPVGEVICAALDRLAKTGVPIWFTELDV 1126
Score = 39.1 bits (79), Expect(5) = 5e-052
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2 / +2
Query: 1154 QVKYLEQVLREGFAHPNVDGIVMW 1225
+ K LE VLRE +AHP V+GIV W
Sbjct: 1148 RAKDLEVVLREAYAHPAVEGIVFW 1219
Score = 26.7 bits (52), Expect(5) = 5e-052
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +2 / +2
Query: 164 NGERVIAGAIVAQSGCWSMLKGGMTAYSSGPAEIYFESHAPVDIWVDSVSLQPFTFD 334
N V GA+ A+ G WS + G + + + AP + V + L+ + D
Sbjct: 152 NETLVECGAVCAKEGGWSEIMGAFRLRTEPRSAAVYVHGAPAGVDVKVMDLRVYPVD 322
Score = 26.3 bits (51), Expect(5) = 5e-052
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1 / +1
Query: 862 GTDLPAGGAAGPQCHPIHERIQ 927
G + GGAAGP + +R+Q
Sbjct: 862 GVHVQGGGAAGPGARALRQRLQ 927
>gb|U59312.1|HVU59312 Hordeum vulgare (1,4)-beta-xylan endohydrolase isoenzyme X-I mRNA,
complete cds
Length = 1630
Score = 143 bits (306), Expect(5) = 2e-051
Identities = 63/142 (44%), Positives = 83/142 (58%)
Frame = +2 / +2
Query: 425 AHANVSIELLRLGFPFGNAITKEILGLPAYEKWFTSRFSVATFENEMKWYSTEWTQNHED 604
A A+V + L FPFG I ++ PA+ +FT+ F A FENE+KWY TE Q +
Sbjct: 347 AAASVRVVQLDNAFPFGTCINTSVIQKPAFLDFFTNHFDWAVFENELKWYHTEVQQGQLN 526
Query: 605 YRVPDAMMNLMRKYKIKVRGHNVFWDDQNSQMQWVKPLNLAQLKAAMQKRLKSVVSPYAG 784
Y DA++ + VRGH VFW QWVK LN QL+++MQ RL+ +VS YAG
Sbjct: 527 YADADALLAFCDRLGKTVRGHCVFWSVDGDVQQWVKNLNKDQLRSSMQSRLEGLVSRYAG 706
Query: 785 KVIHWDVVNENLHFNFFETKLG 850
+ H+DV NE LH FF +LG
Sbjct: 707 RFKHYDVNNEMLHGRFFRDRLG 772
Score = 42.8 bits (87), Expect(5) = 2e-051
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +2 / +2
Query: 1013 GGLKLGVGLESHFSTPNIPYMRSSLDTLAKLKLPMWLTEVDV 1138
G + G+GL+ H P + ++LD LAK +P W TE+DV
Sbjct: 926 GAVVRGIGLQGHVQNPVGEVICAALDRLAKTGVPTWFTELDV 1051
Score = 39.1 bits (79), Expect(5) = 2e-051
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2 / +2
Query: 1154 QVKYLEQVLREGFAHPNVDGIVMW 1225
+ K LE VLRE +AHP V+GIV W
Sbjct: 1073 RAKDLEVVLREAYAHPAVEGIVFW 1144
Score = 26.7 bits (52), Expect(5) = 2e-051
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +2 / +2
Query: 164 NGERVIAGAIVAQSGCWSMLKGGMTAYSSGPAEIYFESHAPVDIWVDSVSLQPFTFD 334
N V GA+ A+ G WS + G + + + AP + V + L+ + D
Sbjct: 77 NETLVECGAVCAKEGGWSEIMGAFRLRTEPRSAAVYVHGAPAGVDVKVMDLRVYPVD 247
Score = 26.3 bits (51), Expect(5) = 2e-051
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1 / +1
Query: 862 GTDLPAGGAAGPQCHPIHERIQ 927
G + GGAAGP + +R+Q
Sbjct: 787 GVHVQGGGAAGPGARALRQRLQ 852
>emb|AJ849364.1| Hordeum vulgare x-I gene for endo-1,4-beta-xylanase, exons 1-3,
allele BetzesX-I
Length = 2094
Score = 144 bits (309), Expect(4) = 2e-049
Identities = 64/142 (45%), Positives = 83/142 (58%)
Frame = +2 / +2
Query: 425 AHANVSIELLRLGFPFGNAITKEILGLPAYEKWFTSRFSVATFENEMKWYSTEWTQNHED 604
A A+V + L FPFG I ++ PA+ +FT+ F A FENE+KWY TE Q +
Sbjct: 956 AAASVRVVQLDNAFPFGTCINTSVIQKPAFLDFFTNHFDWAVFENELKWYHTEVQQGQLN 1135
Query: 605 YRVPDAMMNLMRKYKIKVRGHNVFWDDQNSQMQWVKPLNLAQLKAAMQKRLKSVVSPYAG 784
Y DA++ + VRGH VFW QWVK LN QL++AMQ RL+ +VS YAG
Sbjct: 1136 YADADALLAFCDRLGKTVRGHCVFWSVDGDVQQWVKNLNKDQLRSAMQSRLEGLVSRYAG 1315
Query: 785 KVIHWDVVNENLHFNFFETKLG 850
+ H+DV NE LH FF +LG
Sbjct: 1316 RFKHYDVNNEMLHGRFFRDRLG 1381
Score = 43.7 bits (89), Expect(4) = 2e-049
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2 / +2
Query: 1013 GGLKLGVGLESHFSTPNIPYMRSSLDTLAKLKLPMWLTEVDV 1138
G + G+GL+ H P + ++LD LAK +P+W TE+DV
Sbjct: 1535 GAVVRGIGLQGHVQNPVGEVICAALDRLAKTGVPIWFTELDV 1660
Score = 39.1 bits (79), Expect(4) = 2e-049
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2 / +2
Query: 1154 QVKYLEQVLREGFAHPNVDGIVMW 1225
+ K LE VLRE +AHP V+GIV W
Sbjct: 1682 RAKDLEVVLREAYAHPAVEGIVFW 1753
Score = 26.3 bits (51), Expect(4) = 2e-049
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1 / +1
Query: 862 GTDLPAGGAAGPQCHPIHERIQ 927
G + GGAAGP + +R+Q
Sbjct: 1396 GVHVQGGGAAGPGARALRQRLQ 1461
>gb|AF287726.1|AF287726 Hordeum vulgare clone pFL699 1,4-beta-D xylan xylanohydrolase gene,
complete cds
Length = 5474
Score = 141 bits (303), Expect(4) = 1e-048
Identities = 63/142 (44%), Positives = 82/142 (57%)
Frame = +2 / +1
Query: 425 AHANVSIELLRLGFPFGNAITKEILGLPAYEKWFTSRFSVATFENEMKWYSTEWTQNHED 604
A A+V + L FPFG I ++ PA+ +FT+ A FENE+KWY TE Q +
Sbjct: 2593 AAASVRVVQLDNAFPFGTCINTSVIQKPAFLDFFTNHLDWAVFENELKWYHTEVQQGQLN 2772
Query: 605 YRVPDAMMNLMRKYKIKVRGHNVFWDDQNSQMQWVKPLNLAQLKAAMQKRLKSVVSPYAG 784
Y DA++ + VRGH VFW QWVK LN QL++AMQ RL+ +VS YAG
Sbjct: 2773 YADADALLAFCDRLGKTVRGHCVFWSVDGDVQQWVKNLNKDQLRSAMQSRLEGLVSRYAG 2952
Query: 785 KVIHWDVVNENLHFNFFETKLG 850
+ H+DV NE LH FF +LG
Sbjct: 2953 RFKHYDVNNEMLHGRFFRDRLG 3018
Score = 43.7 bits (89), Expect(4) = 1e-048
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2 / +1
Query: 1013 GGLKLGVGLESHFSTPNIPYMRSSLDTLAKLKLPMWLTEVDV 1138
G + G+GL+ H P + ++LD LAK +P+W TE+DV
Sbjct: 3172 GAVVRGIGLQGHVQNPVGEVICAALDRLAKTGVPIWFTELDV 3297
Score = 39.1 bits (79), Expect(4) = 1e-048
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2 / +1
Query: 1154 QVKYLEQVLREGFAHPNVDGIVMW 1225
+ K LE VLRE +AHP V+GIV W
Sbjct: 3319 RAKDLEVVLREAYAHPAVEGIVFW 3390
Score = 26.3 bits (51), Expect(4) = 1e-048
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1 / +3
Query: 862 GTDLPAGGAAGPQCHPIHERIQ 927
G + GGAAGP + +R+Q
Sbjct: 3033 GVHVQGGGAAGPGARALRQRLQ 3098
>gb|CA019576.1|CA019576 HV12G22r HV Hordeum vulgare subsp. vulgare cDNA clone HV12G22
5-PRIME, mRNA sequence
Length = 410
Score = 191 bits (411), Expect = 1e-047
Identities = 72/135 (53%), Positives = 94/135 (69%)
Frame = +2 / +3
Query: 290 DIWVDSVSLQPFTFDEWDGHTRRSADKVRRRTVKGGAMGANDKPMAHANVSIELLRLGFP 469
D+WVD+VSLQPF+ +EW H + + R+RTV+ A A P+ A V + +R GFP
Sbjct: 6 DMWVDNVSLQPFSKEEWSSHRHAAVKQARKRTVRLRARDAAGNPVPGARVHVRQVRSGFP 185
Query: 470 FGNAITKEILGLPAYEKWFTSRFSVATFENEMKWYSTEWTQNHEDYRVPDAMMNLMRKYK 649
G+A++ EI+ Y++WF RF+V TFENEMKWYSTEWTQ HEDY VPDAM+ R +
Sbjct: 186 LGSAMSHEIINNEKYQQWFAKRFTVTTFENEMKWYSTEWTQGHEDYSVPDAMLRFARAHG 365
Query: 650 IKVRGHNVFWDDQNS 694
I VRGHNVFWDD ++
Sbjct: 366 IAVRGHNVFWDDPST 410
Score = 102 bits (217), Expect(2) = 1e-024
Identities = 54/101 (53%), Positives = 61/101 (60%)
Frame = -1 / -2
Query: 684 SSQNTLCPRTLILYLRIRFIMASGTR*SSWFWVHSVLYHFISFSKVATLKRDVNHFSYAG 505
SSQNTLCPRT + + R +ASGT *SS VHSVLYHFISFSKV T+ R NH Y
Sbjct: 400 SSQNTLCPRTAMPWARANRSIASGTE*SSCPCVHSVLYHFISFSKVVTVNRLANHCWYFS 221
Query: 504 RPRISLVIALPNGKPRRRSSMLTLACAIGLSLAPMAPPFTV 382
IS +IA P+GKP R T A GL A +A TV
Sbjct: 220 LLMISWLIADPSGKPLRTCRTCTRAPGTGLPAASLARSRTV 98
Score = 31.8 bits (63), Expect(2) = 1e-024
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -1 / -2
Query: 339 HSSKVKGCSETLSTQMS 289
HSS + GCS+TLST MS
Sbjct: 55 HSSLLNGCSDTLSTHMS 5
>emb|AJ849366.1| Hordeum vulgare x-II gene for endo-1,4-beta-xylanase, exons 1-3,
allele BetzesX-II
Length = 2161
Score = 135 bits (290), Expect(4) = 5e-046
Identities = 58/140 (41%), Positives = 81/140 (57%)
Frame = +2 / +1
Query: 431 ANVSIELLRLGFPFGNAITKEILGLPAYEKWFTSRFSVATFENEMKWYSTEWTQNHEDYR 610
A V + L FPFG I ++ PA+ +FT+ A FENE+KWY TE Q +Y
Sbjct: 1024 ARVRVVQLDNSFPFGTCINTTVIQNPAFVDFFTNHLDWAVFENELKWYHTEAQQGQLNYA 1203
Query: 611 VPDAMMNLMRKYKIKVRGHNVFWDDQNSQMQWVKPLNLAQLKAAMQKRLKSVVSPYAGKV 790
DA+++ + + RGH VFW QWVK L+ QL++A+Q R++ +VS YAG+
Sbjct: 1204 DADALLDFCDRLGKRARGHCVFWSTDGVVQQWVKNLDRDQLRSAVQSRIQGLVSRYAGRF 1383
Query: 791 IHWDVVNENLHFNFFETKLG 850
H+DV NE LH FF +LG
Sbjct: 1384 PHYDVNNEMLHGRFFRDRLG 1443
Score = 43.7 bits (89), Expect(4) = 5e-046
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +2 / +1
Query: 986 NQIRGYAGNGGLKLGVGLESHFSTPNIPYMRSSLDTLAKLKLPMWLTEVDVVKS 1147
+Q+ G + G+GL+ H S P + +LD LA +P+W TE+DV ++
Sbjct: 1570 DQVAWLQSCGAVVRGIGLQGHISNPVGEVICGALDRLAATGVPVWFTELDVCEA 1731
Score = 37.7 bits (76), Expect(4) = 5e-046
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2 / +1
Query: 1166 LEQVLREGFAHPNVDGIVMW 1225
LE VLRE +AHP V+GIV W
Sbjct: 1756 LEVVLREAYAHPAVEGIVFW 1815
Score = 24.9 bits (48), Expect(4) = 5e-046
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1 / +3
Query: 862 GTDLPAGGAAGPQCHPIHERIQ 927
G + GGAAGP + +R+Q
Sbjct: 1458 GVHVQGGGAAGPGGRALRQRLQ 1523
>gb|U59313.1|HVU59313 Hordeum vulgare (1,4)-beta-xylan endohydrolase isoenzyme X-II mRNA,
partial cds
Length = 1140
Score = 135 bits (290), Expect(4) = 5e-046
Identities = 58/140 (41%), Positives = 81/140 (57%)
Frame = +2 / +1
Query: 431 ANVSIELLRLGFPFGNAITKEILGLPAYEKWFTSRFSVATFENEMKWYSTEWTQNHEDYR 610
A V + L FPFG I ++ PA+ +FT+ A FENE+KWY TE Q +Y
Sbjct: 211 ARVRVVQLDNSFPFGTCINTTVIQNPAFVDFFTNHLDWAVFENELKWYHTEAQQGQLNYA 390
Query: 611 VPDAMMNLMRKYKIKVRGHNVFWDDQNSQMQWVKPLNLAQLKAAMQKRLKSVVSPYAGKV 790
DA+++ + + RGH VFW QWVK L+ QL++A+Q R++ +VS YAG+
Sbjct: 391 DADALLDFCDRLGKRARGHCVFWSTDGVVQQWVKNLDRDQLRSAVQSRIQGLVSRYAGRF 570
Query: 791 IHWDVVNENLHFNFFETKLG 850
H+DV NE LH FF +LG
Sbjct: 571 PHYDVNNEMLHGRFFRDRLG 630
Score = 43.7 bits (89), Expect(4) = 5e-046
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +2 / +1
Query: 986 NQIRGYAGNGGLKLGVGLESHFSTPNIPYMRSSLDTLAKLKLPMWLTEVDVVKS 1147
+Q+ G + G+GL+ H S P + +LD LA +P+W TE+DV ++
Sbjct: 757 DQVAWLQSCGAVVRGIGLQGHISNPVGEVICGALDRLAATGVPVWFTELDVCEA 918
Score = 37.7 bits (76), Expect(4) = 5e-046
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2 / +1
Query: 1166 LEQVLREGFAHPNVDGIVMW 1225
LE VLRE +AHP V+GIV W
Sbjct: 943 LEVVLREAYAHPAVEGIVFW 1002
Score = 24.9 bits (48), Expect(4) = 5e-046
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1 / +3
Query: 862 GTDLPAGGAAGPQCHPIHERIQ 927
G + GGAAGP + +R+Q
Sbjct: 645 GVHVQGGGAAGPGGRALRQRLQ 710
>gb|CA018231.1|CA018231 HV08A09r HV Hordeum vulgare subsp. vulgare cDNA clone HV08A09
5-PRIME, mRNA sequence
Length = 626
Score = 157 bits (338), Expect(2) = 1e-040
Identities = 64/162 (39%), Positives = 100/162 (61%)
Frame = +2 / +3
Query: 284 PVDIWVDSVSLQPFTFDEWDGHTRRSADKVRRRTVKGGAMGANDKPMAHANVSIELLRLG 463
P+ I + S SLQPFT D+W H + + K R+R + + A+VS++
Sbjct: 141 PMKITIASGSLQPFTTDQWSMHQKDTIRKRRKRMATIHVADPHGTRVVGASVSVQQTAKD 320
Query: 464 FPFGNAITKEILGLPAYEKWFTSRFSVATFENEMKWYSTEWTQNHEDYRVPDAMMNLMRK 643
FP G+AI ILG AY+KWF RF+ A FE+E+KWYSTE + VPD M+ +R
Sbjct: 321 FPLGSAIASTILGNDAYQKWFVERFNAAVFEDELKWYSTEPASGLLRFDVPDQMLAFVRS 500
Query: 644 YKIKVRGHNVFWDDQNSQMQWVKPLNLAQLKAAMQKRLKSVV 769
+++ VRGHN+FW++Q++ +WVK L+ L++A+ R++S++
Sbjct: 501 HRVMVRGHNIFWENQDATPRWVKGLSPEDLRSAVNTRIQSLM 626
Score = 30.4 bits (60), Expect(2) = 1e-040
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2 / +3
Query: 185 GAIVAQSGCWSMLKGG 232
G ++A+S CW+ LKGG
Sbjct: 33 GTVLARSDCWAFLKGG 80
>gb|BQ740096.1|BQ740096 HC05F06 HC Hordeum vulgare subsp. vulgare cDNA clone HC05F06
similar to NP_195111.1| (NM_119542) putative protein
[Arabidopsis thaliana] gi|7485620|pir|T05213
hypothetical protein F17I5.40 - Arabidopsis thaliana
gi|3297809|emb|CAA19867.1| (AL03..., mRNA sequence
Length = 602
Score = 127 bits (272), Expect(2) = 4e-031
Identities = 50/105 (47%), Positives = 70/105 (66%)
Frame = +2 / +1
Query: 182 AGAIVAQSGCWSMLKGGMTAYSSGPAEIYFESHAPVDIWVDSVSLQPFTFDEWDGHTRRS 361
AG + A+SGCWS+LKGG+TA SGPAE+YFES+ D+WVD+VSLQPF+ +EW H +
Sbjct: 115 AGGVDAKSGCWSILKGGLTAAVSGPAELYFESNTTADMWVDNVSLQPFSKEEWSSHRHAA 294
Query: 362 ADKVRRRTVKGGAMGANDKPMAHANVSIELLRLGFPFGNAITKEI 496
+ R+RT + A P+ A V + +R GFP G+ ++ EI
Sbjct: 295 VKQARKRTGRLRGRDAAGNPVPGARVHVRQVRSGFPLGSGMSHEI 429
Score = 28.6 bits (56), Expect(2) = 4e-031
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +1 / +1
Query: 61 QRIQMQSDRHYSLSAW 108
+++ +Q+D HY+LSAW
Sbjct: 1 EKVFLQNDTHYTLSAW 48
>gb|CA015721.1|CA015721 HV12G22u HV Hordeum vulgare subsp. vulgare cDNA clone HV12G22
3-PRIME, mRNA sequence
Length = 542
Score = 131 bits (280), Expect = 1e-029
Identities = 51/87 (58%), Positives = 62/87 (71%)
Frame = +2 / -2
Query: 1172 QVLREGFAHPNVDGIVMWAAWHARGCYVMCLTDNSFKNLPVGDLVDKLIAEWKTHRASAT 1351
QVLRE ++HP V GIV+W AWH +GCYVMCLTD++F NLPVGD VDKLIAEWKT
Sbjct: 541 QVLREVYSHPAVHGIVLWTAWHPQGCYVMCLTDDNFNNLPVGDTVDKLIAEWKTSSHVGV 362
Query: 1352 TDHNGAVELHLPLGDFKFTVSHPSLKA 1432
D +G + L GD+ TV+HP+ A
Sbjct: 361 ADADGHYDAELFHGDYNVTVTHPAAAA 281
Score = 106 bits (226), Expect(2) = 9e-024
Identities = 50/83 (60%), Positives = 52/83 (62%)
Frame = -1 / +3
Query: 1419 GWLTVNLKSPRGRWSSTAPL*SVVADARCVFHSAMSLSTRSPTGRFLKLLSVRHMT*QPL 1240
GW+TV L SP +S P S VFHSAMSLST SPTGR LKL SVRHMT*QP
Sbjct: 294 GWVTVTL*SPWNSSAS*CPSASATPTCELVFHSAMSLSTVSPTGRLLKLSSVRHMT*QPC 473
Query: 1239 ACHAAHMTMPSTLGWAKPSLSTC 1171
CHA TMP T G SLSTC
Sbjct: 474 GCHAVQSTMPCTAGCEYTSLSTC 542
Score = 24.9 bits (48), Expect(2) = 9e-024
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3 / +2
Query: 1489 DGMLGRRRRIVDG 1451
DG +GRRRR+ DG
Sbjct: 269 DGGVGRRRRVGDG 307
>gb|CB876721.1|CB876721 HP02C22T HP Hordeum vulgare subsp. vulgare cDNA clone HP02C22
5-PRIME, mRNA sequence
Length = 562
Score = 121 bits (258), Expect(2) = 3e-028
Identities = 47/87 (54%), Positives = 62/87 (71%)
Frame = +2 / -2
Query: 1154 QVKYLEQVLREGFAHPNVDGIVMWAAWHARGCYVMCLTDNSFKNLPVGDLVDKLIAEWKT 1333
Q YLEQVLRE +AHP V G+++W A H GCY MCLTD + KNLPVGD+VD+L+ EW+T
Sbjct: 498 QAVYLEQVLREAYAHPAVSGVMLWTALHENGCYQMCLTDWNLKNLPVGDVVDRLLQEWQT 319
Query: 1334 HRASATTDHNGAVELHLPLGDFKFTVS 1414
+A+ TD +GA LG++ TV+
Sbjct: 318 GQAAGPTDAHGAYSFSGYLGEYVVTVN 238
Score = 25.4 bits (49), Expect(2) = 3e-028
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2 / -2
Query: 1103 LKLPMWLTEVDV 1138
L LP+W TE+D+
Sbjct: 558 LNLPIWFTEIDI 523
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 941,271,184
Number of Sequences: 312970
Number of extensions: 18091612
Number of successful extensions: 211208
Number of sequences better than 1.0e-020: 16
length of database: 58,378,179
effective HSP length: 54
effective length of database: 41,477,799
effective search space used: 22978700646
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)