TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276099.2.1
(545 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ468559.1|BJ468559 BJ468559 K. Sato unpublished cDNA li... 194 8e-052
gb|AW982549.2|AW982549 HVSMEg0003J02f Hordeum vulgare pre-a... 200 5e-051
gb|AV910514.1|AV910514 AV910514 K. Sato unpublished cDNA li... 200 5e-051
gb|BJ465220.1|BJ465220 BJ465220 K. Sato unpublished cDNA li... 200 5e-051
gb|BG344960.2|BG344960 HVSMEg0018A23f Hordeum vulgare pre-a... 146 1e-044
gb|BQ757871.1|BQ757871 EBem10_SQ005_H20_R embryo, 2 Day ger... 106 7e-023
>gb|BJ468559.1|BJ468559 BJ468559 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39f07 3', mRNA sequence
Length = 648
Score = 194 bits (419), Expect(2) = 8e-052
Identities = 85/100 (85%), Positives = 89/100 (89%)
Frame = +3 / -3
Query: 18 GEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEK 197
GEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSH GA+VVVEANHICMISRGIEK
Sbjct: 646 GEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHRGAIVVVEANHICMISRGIEK 467
Query: 198 IRSNTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVS 317
IRS+TATIAVLGQF D SAKA FLQ+VLD+ V* S
Sbjct: 466 IRSSTATIAVLGQFSTDSSAKASFLQSVLDTANQEV*TAS 347
Score = 164 bits (353), Expect(2) = 3e-043
Identities = 76/100 (76%), Positives = 85/100 (85%)
Frame = -2 / +3
Query: 316 DTIHTAEPTESKTFCKKHALAEGSAKNWPKTAIVAVLLLIFSIPLEIMQMWLASTTTMAP 137
+ +HT+ S T C+K ALAE S +N PKTAIVAVLLLIFSIPL+IMQMWLASTTT+AP
Sbjct: 348 EAVHTS*LAVSNTLCRKDALAEESVEN*PKTAIVAVLLLIFSIPLDIMQMWLASTTTIAP 527
Query: 136 LCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSP 17
CETE*TASAICLVILS T*SLHP*K*T A*K +RS+PSP
Sbjct: 528 RCETE*TASAICLVILSWT*SLHP*K*TRA*KWERSIPSP 647
Score = 127 bits (271), Expect(2) = 3e-031
Identities = 57/101 (56%), Positives = 65/101 (64%)
Frame = +2 / -2
Query: 20 RRH*SVAFSGVGSFLRVQASGSRKDDKADS*SGLFGFAQWGHGRC*GQPHLHDLKGDREN 199
RR * + FSG GSFLRVQASG KDDK DS*S LF W + QPHLHD+KG+REN
Sbjct: 644 RRD*PLPFSGSGSFLRVQASGPGKDDKTDS*SSLFRLTSWSYSCRGSQPHLHDIKGNREN 465
Query: 200 KEQHGNNCSFGPVFGRPFCQGVLLTECFGFCWFCGMNRIAS 322
+E + NNCSF V R FCQG+L TE +C MN S
Sbjct: 464 QE*YSNNCSFRSVLDRFFCQGILSTERVRYC*SGSMNGFGS 342
Score = 123 bits (264), Expect(2) = 2e-029
Identities = 54/106 (50%), Positives = 73/106 (68%)
Frame = -1 / +2
Query: 335 FFLCCLRYDSYRRTNRIQNIL*EARLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGL 156
F+ +R SY + I + L*+ LGRR+G++L NCNCC P FLY P* HA+VVG
Sbjct: 329 FYWYMIRSRSYFLISSI*HAL*KGCLGRRIGRELT*NCNCCCTTPDFLYSP*YHADVVGF 508
Query: 155 NNDHGPIVRNRINRFSYLPCHPFLNLKLAPVEMNQRLKMRPINAFS 18
++++ + + I+ FSYL CHPFL+LKLAPVEMNQ LKM +N F+
Sbjct: 509 HDNYSSTM*DGIDCFSYLSCHPFLDLKLAPVEMNQSLKMGAVNPFA 646
Score = 31.8 bits (63), Expect(2) = 3e-043
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3 / +1
Query: 534 TITISFLFEVPYK*HGTTRENQN 466
T F +P K*+GTTRENQN
Sbjct: 64 TYNARITFAMPLK*NGTTRENQN 132
Score = 29.9 bits (59), Expect(2) = 8e-052
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1 / -1
Query: 460 KRVLVLSCCTMSLVRHFK 513
++VLVL CCT+S RH K
Sbjct: 138 QKVLVLPCCTISFQRHGK 85
Score = 29.0 bits (57), Expect(2) = 3e-031
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2 / -2
Query: 452 KAPKGFWFSRVVPCHL*G 505
++ + FWFSRVVP H G
Sbjct: 146 RSTRKFWFSRVVPFHFNG 93
Score = 26.3 bits (51), Expect(2) = 2e-029
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2 / +3
Query: 505 ALQVTWYNTREPK 467
A+++ WYNT EPK
Sbjct: 93 AVEMKWYNTGEPK 131
>gb|AW982549.2|AW982549 HVSMEg0003J02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003J02f, mRNA sequence
Length = 562
Score = 200 bits (431), Expect = 5e-051
Identities = 87/105 (82%), Positives = 92/105 (87%)
Frame = +3 / +2
Query: 3 FDNGSGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMIS 182
F +G GEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSH GA+VVVEANHICMIS
Sbjct: 32 FGSGDGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHRGAIVVVEANHICMIS 211
Query: 183 RGIEKIRSNTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVS 317
RGIEKIRS+TATIAVLGQF D SAKA FLQ+VLD+ V* S
Sbjct: 212 RGIEKIRSSTATIAVLGQFSTDSSAKASFLQSVLDTANQEV*TAS 346
Score = 170 bits (366), Expect = 5e-042
Identities = 79/105 (75%), Positives = 88/105 (83%)
Frame = -2 / -2
Query: 316 DTIHTAEPTESKTFCKKHALAEGSAKNWPKTAIVAVLLLIFSIPLEIMQMWLASTTTMAP 137
+ +HT+ S T C+K ALAE S +N PKTAIVAVLLLIFSIPL+IMQMWLASTTT+AP
Sbjct: 345 EAVHTS*LAVSNTLCRKDALAEESVEN*PKTAIVAVLLLIFSIPLDIMQMWLASTTTIAP 166
Query: 136 LCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSPLPLSK 2
CETE*TASAICLVILS T*SLHP*K*T A*K +RS+PSP PL K
Sbjct: 165 RCETE*TASAICLVILSWT*SLHP*K*TRA*KWERSIPSPSPLPK 31
Score = 130 bits (278), Expect = 7e-030
Identities = 58/105 (55%), Positives = 67/105 (63%)
Frame = +2 / +1
Query: 8 QWKRRRH*SVAFSGVGSFLRVQASGSRKDDKADS*SGLFGFAQWGHGRC*GQPHLHDLKG 187
QW+ RR * + FSG SFLRVQASG KDDK DS*S LF W + QPHLHD+KG
Sbjct: 37 QWRWRRD*PLPFSGSRSFLRVQASGPGKDDKTDS*SSLFRLTSWSYSCRGSQPHLHDIKG 216
Query: 188 DRENKEQHGNNCSFGPVFGRPFCQGVLLTECFGFCWFCGMNRIAS 322
+REN+E + NNCSF V R FCQG+L TE +C MN S
Sbjct: 217 NRENQE*YSNNCSFRSVLDRFFCQGILSTERVRYC*SGSMNGFGS 351
Score = 125 bits (268), Expect = 2e-028
Identities = 55/111 (49%), Positives = 75/111 (67%)
Frame = -1 / -1
Query: 335 FFLCCLRYDSYRRTNRIQNIL*EARLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGL 156
F+ +R SY + I + L*+ LGRR+G++L NCNCC P FLY P* HA+VVG
Sbjct: 364 FYWYMIRSRSYFLISSI*HAL*KGCLGRRIGRELT*NCNCCCTTPDFLYSP*YHADVVGF 185
Query: 155 NNDHGPIVRNRINRFSYLPCHPFLNLKLAPVEMNQRLKMRPINAFSASIVK 3
++++ + + I+ FSYL CHPFL+LKLAPVEMN+ LKM +N F+ S K
Sbjct: 184 HDNYSSTM*DGIDCFSYLSCHPFLDLKLAPVEMNESLKMGAVNPFAISTAK 32
>gb|AV910514.1|AV910514 AV910514 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak4m15 5', mRNA sequence
Length = 458
Score = 200 bits (431), Expect = 5e-051
Identities = 87/105 (82%), Positives = 92/105 (87%)
Frame = +3 / +3
Query: 3 FDNGSGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMIS 182
F +G GEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSH GA+VVVEANHICMIS
Sbjct: 60 FGSGDGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHRGAIVVVEANHICMIS 239
Query: 183 RGIEKIRSNTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVS 317
RGIEKIRS+TATIAVLGQF D SAKA FLQ+VLD+ V* S
Sbjct: 240 RGIEKIRSSTATIAVLGQFSTDSSAKASFLQSVLDTANQEV*TAS 374
Score = 170 bits (366), Expect = 5e-042
Identities = 79/105 (75%), Positives = 88/105 (83%)
Frame = -2 / -2
Query: 316 DTIHTAEPTESKTFCKKHALAEGSAKNWPKTAIVAVLLLIFSIPLEIMQMWLASTTTMAP 137
+ +HT+ S T C+K ALAE S +N PKTAIVAVLLLIFSIPL+IMQMWLASTTT+AP
Sbjct: 373 EAVHTS*LAVSNTLCRKDALAEESVEN*PKTAIVAVLLLIFSIPLDIMQMWLASTTTIAP 194
Query: 136 LCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSPLPLSK 2
CETE*TASAICLVILS T*SLHP*K*T A*K +RS+PSP PL K
Sbjct: 193 RCETE*TASAICLVILSWT*SLHP*K*TRA*KWERSIPSPSPLPK 59
Score = 133 bits (286), Expect = 5e-031
Identities = 59/105 (56%), Positives = 68/105 (64%)
Frame = +2 / +2
Query: 8 QWKRRRH*SVAFSGVGSFLRVQASGSRKDDKADS*SGLFGFAQWGHGRC*GQPHLHDLKG 187
QW+ RR * + FSG GSFLRVQASG KDDK DS*S LF W + QPHLHD+KG
Sbjct: 65 QWRWRRD*PLPFSGSGSFLRVQASGPGKDDKTDS*SSLFRLTSWSYSCRGSQPHLHDIKG 244
Query: 188 DRENKEQHGNNCSFGPVFGRPFCQGVLLTECFGFCWFCGMNRIAS 322
+REN+E + NNCSF V R FCQG+L TE +C MN S
Sbjct: 245 NRENQE*YSNNCSFRSVLDRFFCQGILSTERVRYC*SGSMNGFGS 379
Score = 127 bits (271), Expect = 6e-029
Identities = 56/111 (50%), Positives = 75/111 (67%)
Frame = -1 / -1
Query: 335 FFLCCLRYDSYRRTNRIQNIL*EARLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGL 156
F+ +R SY + I + L*+ LGRR+G++L NCNCC P FLY P* HA+VVG
Sbjct: 392 FYWYMIRSRSYFLISSI*HAL*KGCLGRRIGRELT*NCNCCCTTPDFLYSP*YHADVVGF 213
Query: 155 NNDHGPIVRNRINRFSYLPCHPFLNLKLAPVEMNQRLKMRPINAFSASIVK 3
++++ + + I+ FSYL CHPFL+LKLAPVEMNQ LKM +N F+ S K
Sbjct: 212 HDNYSSTM*DGIDCFSYLSCHPFLDLKLAPVEMNQSLKMGAVNPFAISTAK 60
>gb|BJ465220.1|BJ465220 BJ465220 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38m09 5', mRNA sequence
Length = 480
Score = 200 bits (431), Expect = 5e-051
Identities = 87/105 (82%), Positives = 92/105 (87%)
Frame = +3 / +1
Query: 3 FDNGSGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMIS 182
F +G GEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSH GA+VVVEANHICMIS
Sbjct: 61 FGSGDGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHRGAIVVVEANHICMIS 240
Query: 183 RGIEKIRSNTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVS 317
RGIEKIRS+TATIAVLGQF D SAKA FLQ+VLD+ V* S
Sbjct: 241 RGIEKIRSSTATIAVLGQFSTDSSAKASFLQSVLDTANQEV*TAS 375
Score = 170 bits (366), Expect = 5e-042
Identities = 79/105 (75%), Positives = 88/105 (83%)
Frame = -2 / -2
Query: 316 DTIHTAEPTESKTFCKKHALAEGSAKNWPKTAIVAVLLLIFSIPLEIMQMWLASTTTMAP 137
+ +HT+ S T C+K ALAE S +N PKTAIVAVLLLIFSIPL+IMQMWLASTTT+AP
Sbjct: 374 EAVHTS*LAVSNTLCRKDALAEESVEN*PKTAIVAVLLLIFSIPLDIMQMWLASTTTIAP 195
Query: 136 LCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSPLPLSK 2
CETE*TASAICLVILS T*SLHP*K*T A*K +RS+PSP PL K
Sbjct: 194 RCETE*TASAICLVILSWT*SLHP*K*TRA*KWERSIPSPSPLPK 60
Score = 133 bits (286), Expect = 5e-031
Identities = 59/105 (56%), Positives = 68/105 (64%)
Frame = +2 / +3
Query: 8 QWKRRRH*SVAFSGVGSFLRVQASGSRKDDKADS*SGLFGFAQWGHGRC*GQPHLHDLKG 187
QW+ RR * + FSG GSFLRVQASG KDDK DS*S LF W + QPHLHD+KG
Sbjct: 66 QWRWRRD*PLPFSGSGSFLRVQASGPGKDDKTDS*SSLFRLTSWSYSCRGSQPHLHDIKG 245
Query: 188 DRENKEQHGNNCSFGPVFGRPFCQGVLLTECFGFCWFCGMNRIAS 322
+REN+E + NNCSF V R FCQG+L TE +C MN S
Sbjct: 246 NRENQE*YSNNCSFRSVLDRFFCQGILSTERVRYC*SGSMNGFGS 380
Score = 127 bits (271), Expect = 6e-029
Identities = 56/111 (50%), Positives = 75/111 (67%)
Frame = -1 / -1
Query: 335 FFLCCLRYDSYRRTNRIQNIL*EARLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGL 156
F+ +R SY + I + L*+ LGRR+G++L NCNCC P FLY P* HA+VVG
Sbjct: 393 FYWYMIRSRSYFLISSI*HAL*KGCLGRRIGRELT*NCNCCCTTPDFLYSP*YHADVVGF 214
Query: 155 NNDHGPIVRNRINRFSYLPCHPFLNLKLAPVEMNQRLKMRPINAFSASIVK 3
++++ + + I+ FSYL CHPFL+LKLAPVEMNQ LKM +N F+ S K
Sbjct: 213 HDNYSSTM*DGIDCFSYLSCHPFLDLKLAPVEMNQSLKMGAVNPFAISTAK 61
>gb|BG344960.2|BG344960 HVSMEg0018A23f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018A23f, mRNA sequence
Length = 625
Score = 146 bits (313), Expect(2) = 1e-044
Identities = 60/65 (92%), Positives = 62/65 (95%)
Frame = +3 / +2
Query: 3 FDNGSGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMIS 182
F +G GEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSH GA+VVVEANHICMIS
Sbjct: 329 FGSGDGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHRGAIVVVEANHICMIS 508
Query: 183 RGIEK 197
RGIEK
Sbjct: 509 RGIEK 523
Score = 120 bits (257), Expect(2) = 1e-035
Identities = 55/65 (84%), Positives = 59/65 (90%)
Frame = -2 / -2
Query: 196 FSIPLEIMQMWLASTTTMAPLCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSP 17
FSIPL+IMQMWLASTTT+AP CETE*TASAICLVILS T*SLHP*K*T A*K +RS+PSP
Sbjct: 522 FSIPLDIMQMWLASTTTIAPRCETE*TASAICLVILSWT*SLHP*K*TRA*KWERSIPSP 343
Query: 16 LPLSK 2
PL K
Sbjct: 342 SPLPK 328
Score = 87.7 bits (185), Expect(2) = 5e-025
Identities = 38/63 (60%), Positives = 43/63 (68%)
Frame = +2 / +1
Query: 8 QWKRRRH*SVAFSGVGSFLRVQASGSRKDDKADS*SGLFGFAQWGHGRC*GQPHLHDLKG 187
QW+ RR * + FSG SFLRVQASG KDDK DS*S LF W + QPHLHD+KG
Sbjct: 334 QWRWRRD*PLPFSGSRSFLRVQASGPGKDDKTDS*SSLFRLTSWSYSCRGSQPHLHDIKG 513
Query: 188 DRE 196
+RE
Sbjct: 514 NRE 522
Score = 86.3 bits (182), Expect(2) = 3e-023
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = -1 / -1
Query: 197 FLYPP*DHANVVGLNNDHGPIVRNRINRFSYLPCHPFLNLKLAPVEMNQRLKMRPINAFS 18
FLY P* HA+VVG ++++ + + I+ FSYL CHPFL+LKLAPVEMN+ LKM +N F+
Sbjct: 523 FLYSP*YHADVVGFHDNYSSTM*DGIDCFSYLSCHPFLDLKLAPVEMNESLKMGAVNPFA 344
Query: 17 ASIVK 3
S K
Sbjct: 343 ISTAK 329
Score = 53.3 bits (110), Expect(2) = 1e-044
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +3 / +1
Query: 183 RGIEKIRSNTATIAVLGQFLADPSAKACFLQNVLDS 290
+G +IRS+TATIAVLGQF D SAKA FLQ+ LD+
Sbjct: 508 KGNREIRSSTATIAVLGQFSTDSSAKASFLQSGLDT 615
Score = 48.7 bits (100), Expect(2) = 1e-035
Identities = 23/35 (65%), Positives = 25/35 (71%)
Frame = -2 / -3
Query: 286 SKTFCKKHALAEGSAKNWPKTAIVAVLLLIFSIPL 182
S C+K ALAE S +N PKTAIVAVLLLI PL
Sbjct: 611 SNPLCRKDALAEESVEN*PKTAIVAVLLLISLFPL 507
Score = 46.0 bits (94), Expect(2) = 5e-025
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +2 / +3
Query: 182 KGDRENKEQHGNNCSFGPVFGRPFCQGVLLTECFGFC 292
+G+ N+E + NNCSF V R FCQG+L TE +C
Sbjct: 507 QGE*RNQE*YSNNCSFRSVLDRFFCQGILSTERVRYC 617
Score = 41.4 bits (84), Expect(2) = 3e-023
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -1 / -2
Query: 275 L*EARLGRRVGQKLAQNCNCCRVAPYFLYP 186
L*+ LGRR+G++L NCNCC P F P
Sbjct: 600 L*KGCLGRRIGRELT*NCNCCCTTPDFSIP 511
>gb|BQ757871.1|BQ757871 EBem10_SQ005_H20_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ005_H20 5', mRNA sequence
Length = 314
Score = 106 bits (227), Expect = 7e-023
Identities = 48/63 (76%), Positives = 52/63 (82%)
Frame = +3 / +2
Query: 129 SHNGAMVVVEANHICMISRGIEKIRSNTATIAVLGQFLADPSAKACFLQNVLDSVGSAV* 308
SH GA+VVVEANHICMISRGIEKIRS+TATIAVLGQF D SAKA FLQ+VLD+ V*
Sbjct: 2 SHRGAIVVVEANHICMISRGIEKIRSSTATIAVLGQFSTDSSAKASFLQSVLDTANQEV* 181
Query: 309 IVS 317
S
Sbjct: 182 TAS 190
Score = 102 bits (217), Expect = 2e-021
Identities = 44/63 (69%), Positives = 51/63 (80%)
Frame = -2 / -3
Query: 316 DTIHTAEPTESKTFCKKHALAEGSAKNWPKTAIVAVLLLIFSIPLEIMQMWLASTTTMAP 137
+ +HT+ S T C+K ALAE S +N PKTAIVAVLLLIFSIPL+IMQMWLASTTT+AP
Sbjct: 189 EAVHTS*LAVSNTLCRKDALAEESVEN*PKTAIVAVLLLIFSIPLDIMQMWLASTTTIAP 10
Query: 136 LCE 128
CE
Sbjct: 9 RCE 1
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 267,843,910
Number of Sequences: 312970
Number of extensions: 4033327
Number of successful extensions: 60093
Number of sequences better than 1.0e-020: 9
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 5597587949
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)