TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203888.2.1
(787 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ767997.1|BQ767997 EBro08_SQ010_L11_R root, 3 week, dro... 220 7e-057
gb|CA001434.1|CA001434 HS17O03u HS Hordeum vulgare subsp. v... 125 1e-037
gb|BI959736.1|BI959736 HVSMEn0021B08f Hordeum vulgare rachi... 124 2e-033
gb|BI960224.1|BI960224 HVSMEn0023M14f Hordeum vulgare rachi... 124 2e-033
gb|BI960616.1|BI960616 HVSMEn0025G07f Hordeum vulgare rachi... 124 2e-033
gb|BF260117.2|BF260117 HVSMEf0021C12f Hordeum vulgare seedl... 124 2e-032
gb|AL505122.1|AL505122 AL505122 Hordeum vulgare Barke roots... 124 6e-032
gb|BF257029.2|BF257029 HVSMEf0011K17f Hordeum vulgare seedl... 121 6e-031
gb|AV920163.1|AV920163 AV920163 K. Sato unpublished cDNA li... 119 7e-030
gb|AV917656.1|AV917656 AV917656 K. Sato unpublished cDNA li... 119 7e-030
gb|BJ466471.1|BJ466471 BJ466471 K. Sato unpublished cDNA li... 119 7e-030
gb|AV930818.1|AV930818 AV930818 K. Sato unpublished cDNA li... 119 7e-030
gb|BJ466353.1|BJ466353 BJ466353 K. Sato unpublished cDNA li... 119 7e-030
gb|BJ466778.1|BJ466778 BJ466778 K. Sato unpublished cDNA li... 119 7e-030
gb|BJ468102.1|BJ468102 BJ468102 K. Sato unpublished cDNA li... 119 7e-030
gb|BQ472105.1|BQ472105 HV04G21r HV Hordeum vulgare subsp. v... 119 7e-030
gb|BQ471958.1|BQ471958 HV03P22r HV Hordeum vulgare subsp. v... 119 7e-030
gb|BF260877.2|BF260877 HVSMEf0023C21f Hordeum vulgare seedl... 120 2e-029
gb|BF256678.3|BF256678 HVSMEf0010L01f Hordeum vulgare seedl... 120 2e-029
gb|BF255126.2|BF255126 HVSMEf0006A10f Hordeum vulgare seedl... 116 6e-029
gb|BQ756546.1|BQ756546 EBem09_SQ003_A13_R embryo, 1 Day ger... 118 9e-029
gb|BF257679.2|BF257679 HVSMEf0013I17f Hordeum vulgare seedl... 112 3e-028
gb|BI959354.1|BI959354 HVSMEn0019F13f Hordeum vulgare rachi... 124 7e-028
gb|BM817348.1|BM817348 HC105H12_T3.ab1 HC Hordeum vulgare s... 118 1e-027
gb|BI957415.1|BI957415 HVSMEn0009H02f Hordeum vulgare rachi... 106 3e-027
gb|CB874364.1|CB874364 HX05A22w HX Hordeum vulgare subsp. v... 120 8e-027
gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mR... 105 9e-027
gb|BJ467726.1|BJ467726 BJ467726 K. Sato unpublished cDNA li... 105 9e-027
gb|AV917798.1|AV917798 AV917798 K. Sato unpublished cDNA li... 105 9e-027
gb|BJ468391.1|BJ468391 BJ468391 K. Sato unpublished cDNA li... 105 9e-027
gb|AV922569.1|AV922569 AV922569 K. Sato unpublished cDNA li... 105 9e-027
gb|AV921300.1|AV921300 AV921300 K. Sato unpublished cDNA li... 105 9e-027
gb|AV917391.1|AV917391 AV917391 K. Sato unpublished cDNA li... 105 9e-027
gb|AV930903.1|AV930903 AV930903 K. Sato unpublished cDNA li... 105 9e-027
gb|BJ465651.1|BJ465651 BJ465651 K. Sato unpublished cDNA li... 105 9e-027
gb|AV921493.1|AV921493 AV921493 K. Sato unpublished cDNA li... 105 9e-027
gb|AV913720.1|AV913720 AV913720 K. Sato unpublished cDNA li... 105 9e-027
gb|AV918629.1|AV918629 AV918629 K. Sato unpublished cDNA li... 105 1e-026
gb|AV913461.1|AV913461 AV913461 K. Sato unpublished cDNA li... 105 1e-026
gb|AV915144.1|AV915144 AV915144 K. Sato unpublished cDNA li... 105 1e-026
gb|AV918498.1|AV918498 AV918498 K. Sato unpublished cDNA li... 119 2e-026
gb|AV921873.1|AV921873 AV921873 K. Sato unpublished cDNA li... 119 2e-026
gb|BJ465136.1|BJ465136 BJ465136 K. Sato unpublished cDNA li... 104 2e-026
gb|AV915892.1|AV915892 AV915892 K. Sato unpublished cDNA li... 104 2e-026
gb|AV921750.1|AV921750 AV921750 K. Sato unpublished cDNA li... 105 6e-026
gb|BM444496.1|BM444496 EBem09_SQ005_H02_R embryo, 1 Day ger... 116 2e-025
gb|AV921717.1|AV921717 AV921717 K. Sato unpublished cDNA li... 105 2e-025
gb|AV836827.1|AV836827 AV836827 K. Sato unpublished cDNA li... 100 1e-024
gb|BF256785.2|BF256785 HVSMEf0011A04f Hordeum vulgare seedl... 112 2e-024
gb|BF259059.3|BF259059 HVSMEf0017I24f Hordeum vulgare seedl... 110 9e-024
gb|BF258972.2|BF258972 HVSMEf0017D21f Hordeum vulgare seedl... 76 9e-024
gb|BI960117.1|BI960117 HVSMEn0023E17f Hordeum vulgare rachi... 95 1e-023
gb|BI957043.1|BI957043 HVSMEn0007B24f Hordeum vulgare rachi... 84 2e-023
gb|CA019261.1|CA019261 HV11G16r HV Hordeum vulgare subsp. v... 95 2e-023
gb|AV922333.1|AV922333 AV922333 K. Sato unpublished cDNA li... 106 1e-022
gb|AV916289.1|AV916289 AV916289 K. Sato unpublished cDNA li... 105 2e-022
gb|AV917726.1|AV917726 AV917726 K. Sato unpublished cDNA li... 105 2e-022
gb|AV918052.1|AV918052 AV918052 K. Sato unpublished cDNA li... 105 2e-022
gb|AV918207.1|AV918207 AV918207 K. Sato unpublished cDNA li... 105 2e-022
gb|AV918761.1|AV918761 AV918761 K. Sato unpublished cDNA li... 105 2e-022
gb|AV918770.1|AV918770 AV918770 K. Sato unpublished cDNA li... 105 2e-022
gb|AV919115.1|AV919115 AV919115 K. Sato unpublished cDNA li... 105 2e-022
gb|AV919503.1|AV919503 AV919503 K. Sato unpublished cDNA li... 105 2e-022
gb|AV920093.1|AV920093 AV920093 K. Sato unpublished cDNA li... 105 2e-022
gb|AV920132.1|AV920132 AV920132 K. Sato unpublished cDNA li... 105 2e-022
gb|AV920187.1|AV920187 AV920187 K. Sato unpublished cDNA li... 105 2e-022
gb|AV920270.1|AV920270 AV920270 K. Sato unpublished cDNA li... 105 2e-022
gb|AV920718.1|AV920718 AV920718 K. Sato unpublished cDNA li... 105 2e-022
gb|AV921326.1|AV921326 AV921326 K. Sato unpublished cDNA li... 105 2e-022
gb|AV921423.1|AV921423 AV921423 K. Sato unpublished cDNA li... 105 2e-022
gb|AV921716.1|AV921716 AV921716 K. Sato unpublished cDNA li... 105 2e-022
gb|AV922403.1|AV922403 AV922403 K. Sato unpublished cDNA li... 105 2e-022
gb|AV922546.1|AV922546 AV922546 K. Sato unpublished cDNA li... 105 2e-022
gb|BJ465776.1|BJ465776 BJ465776 K. Sato unpublished cDNA li... 105 2e-022
gb|BJ465916.1|BJ465916 BJ465916 K. Sato unpublished cDNA li... 105 2e-022
gb|BJ465999.1|BJ465999 BJ465999 K. Sato unpublished cDNA li... 105 2e-022
gb|BJ466487.1|BJ466487 BJ466487 K. Sato unpublished cDNA li... 105 2e-022
gb|BJ467518.1|BJ467518 BJ467518 K. Sato unpublished cDNA li... 105 2e-022
gb|BJ467613.1|BJ467613 BJ467613 K. Sato unpublished cDNA li... 105 2e-022
gb|BJ468293.1|BJ468293 BJ468293 K. Sato unpublished cDNA li... 105 2e-022
gb|AL504589.1|AL504589 AL504589 Hordeum vulgare Barke roots... 91 5e-022
gb|AV913044.1|AV913044 AV913044 K. Sato unpublished cDNA li... 90 5e-022
gb|AV917637.1|AV917637 AV917637 K. Sato unpublished cDNA li... 104 8e-022
gb|BI959122.1|BI959122 HVSMEn0018E10f Hordeum vulgare rachi... 57 2e-021
gb|AV918321.1|AV918321 AV918321 K. Sato unpublished cDNA li... 102 2e-021
gb|AJ433184.1|AJ433184 AJ433184 S00002 Hordeum vulgare subs... 102 2e-021
gb|BJ466470.1|BJ466470 BJ466470 K. Sato unpublished cDNA li... 102 2e-021
gb|BQ762437.1|BQ762437 EBro01_SQ005_H23_R root, 3 week, hyd... 102 2e-021
gb|CA016587.1|CA016587 HV08D09u HV Hordeum vulgare subsp. v... 101 5e-021
gb|BF257544.2|BF257544 HVSMEf0013D06f Hordeum vulgare seedl... 73 7e-021
>gb|BQ767997.1|BQ767997 EBro08_SQ010_L11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_L11 5', mRNA sequence
Length = 348
Score = 220 bits (475), Expect = 7e-057
Identities = 90/104 (86%), Positives = 94/104 (90%)
Frame = -1 / +1
Query: 736 GAAGGFRGVATLVDVGGSSGACLEMIMRRVPTITEGINFDLPDVVAAAPSIAGVRHVGGD 557
G GGF GV TLVDVGGSSGACLEMIMRRVPTI EG+NFDLPDVVAAAP IAGV+HVGGD
Sbjct: 37 GYEGGFEGVGTLVDVGGSSGACLEMIMRRVPTIREGVNFDLPDVVAAAPPIAGVKHVGGD 216
Query: 556 MFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAALPDGGKLVA 425
MFKSIPSGDAIFMKWVLTTWT+DEC AIL+ C ALPDGGKLVA
Sbjct: 217 MFKSIPSGDAIFMKWVLTTWTNDECTAILKKCHDALPDGGKLVA 348
Score = 191 bits (411), Expect = 5e-048
Identities = 82/99 (82%), Positives = 86/99 (86%)
Frame = +3 / -2
Query: 426 ATSLPPSGKAAGQFLRMAGHSSSVHVVRTHFMKMASPEGMDLNISPPTCLTPAIDGAAAT 605
ATS PPSG A+ FLR+A HSS VHVVRTHFMKMASPEGMDLN+SPPTC TPA+ GAAAT
Sbjct: 347 ATSFPPSGSASWHFLRIAVHSSLVHVVRTHFMKMASPEGMDLNMSPPTCFTPAMGGAAAT 168
Query: 606 TSGRSKLMPSVMVGTLRMIISRQAPELPPTSTSVATPRN 722
TSGRSKL PS MVGT RMIISRQAPELPPTSTSV TP N
Sbjct: 167 TSGRSKLTPSRMVGTRRMIISRQAPELPPTSTSVPTPSN 51
Score = 159 bits (342), Expect = 2e-038
Identities = 70/107 (65%), Positives = 79/107 (73%)
Frame = +2 / -1
Query: 428 HELAAVRQSGGAVPQDGRALVVGPRRQNPLHENGITGRDGLEHISANMPHSGDRRRCGDH 607
HEL AVRQ A +D RALVVGPRR+NPLHE+G+ G DGLEH+S N+ HSGD R GD
Sbjct: 345 HELPAVRQRVVAFLEDRRALVVGPRRENPLHEDGVAGGDGLEHVSTNVLHSGDGGRGGDD 166
Query: 608 VGEVEVDALGDGGDPAHDHLEAGAGASPDVYERCDAAEPAGGAVARR 748
V +VEVDA DGG PAHDHLEAGAGA+ DV ER A EPA V +R
Sbjct: 165 VWQVEVDAFADGGHPAHDHLEAGAGAAADVDERAHALEPALVPVQQR 25
>gb|CA001434.1|CA001434 HS17O03u HS Hordeum vulgare subsp. vulgare cDNA clone HS17O03
3-PRIME, mRNA sequence
Length = 359
Score = 125 bits (268), Expect(2) = 1e-037
Identities = 54/66 (81%), Positives = 56/66 (84%)
Frame = -1 / -3
Query: 478 AILRNCPAALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEEEFR 299
AIL+ C ALPDGGKLVACEPVVPE TD+S TRALLENDIFVMT YRTQGRERSEEEFR
Sbjct: 354 AILKKCHDALPDGGKLVACEPVVPETTDASTRTRALLENDIFVMTTYRTQGRERSEEEFR 175
Query: 298 HLGVDA 281
LG A
Sbjct: 174 QLGFAA 157
Score = 105 bits (223), Expect(2) = 9e-026
Identities = 48/67 (71%), Positives = 51/67 (76%)
Frame = +2 / +1
Query: 281 GVDAEVAELLLGALPPLRPVGGHDEDVVLQQRPRPGAAVRLLRHHRLAGHELAAVRQSGG 460
G +AE+ ELLL LPPL PVGGHDEDVVLQQRPRP A VR LRHHRLA HEL AVRQ
Sbjct: 157 GGEAELPELLL*PLPPLGPVGGHDEDVVLQQRPRPRAGVRRLRHHRLARHELPAVRQRVV 336
Query: 461 AVPQDGR 481
A +D R
Sbjct: 337 AFLEDRR 357
Score = 51.0 bits (105), Expect(2) = 1e-037
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -1 / -3
Query: 283 AAGFTAFRAIYLDPFYAVLEYTK*S 209
AAGF FRA+YLDPFYA+LEY K*S
Sbjct: 162 AAGFAGFRALYLDPFYALLEYVK*S 88
Score = 31.8 bits (63), Expect(2) = 9e-026
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +2 / +1
Query: 212 SLGILEDSIEGVEIDGSEGGEACG 283
SL ILE SIE VE++ E GEA G
Sbjct: 91 SLDILEKSIERVEVECPEAGEAGG 162
>gb|BI959736.1|BI959736 HVSMEn0021B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021B08f, mRNA sequence
Length = 654
Score = 124 bits (265), Expect(2) = 2e-033
Identities = 44/96 (45%), Positives = 67/96 (69%)
Frame = -1 / +3
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ AP+ GV H+GGDMF+ +PSGDAI MKW+L W+D+ C +L+NC
Sbjct: 195 KGINFDLPHVISEAPAFPGVTHIGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYD 374
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
ALP GK+V E ++P +++P + + D+ ++
Sbjct: 375 ALPAHGKVVLVECILPVNPEATPEVQGVFHVDMIML 482
Score = 38.2 bits (77), Expect(2) = 2e-033
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -1 / +3
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF G+ TLVDVGG GA + I+ R P +
Sbjct: 108 GFEGLGTLVDVGGGVGATVGAIIARYPAV 194
>gb|BI960224.1|BI960224 HVSMEn0023M14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023M14f, mRNA sequence
Length = 648
Score = 124 bits (265), Expect(2) = 2e-033
Identities = 44/96 (45%), Positives = 67/96 (69%)
Frame = -1 / +2
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ AP+ GV H+GGDMF+ +PSGDAI MKW+L W+D+ C +L+NC
Sbjct: 218 KGINFDLPHVISEAPAFPGVTHIGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYD 397
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
ALP GK+V E ++P +++P + + D+ ++
Sbjct: 398 ALPAHGKVVLVECILPVNPEATPEVQGVFHVDMIML 505
Score = 38.2 bits (77), Expect(2) = 2e-033
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -1 / +2
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF G+ TLVDVGG GA + I+ R P +
Sbjct: 131 GFEGLGTLVDVGGGVGATVGAIIARYPAV 217
>gb|BI960616.1|BI960616 HVSMEn0025G07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025G07f, mRNA sequence
Length = 641
Score = 124 bits (265), Expect(2) = 2e-033
Identities = 44/96 (45%), Positives = 67/96 (69%)
Frame = -1 / +3
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ AP+ GV H+GGDMF+ +PSGDAI MKW+L W+D+ C +L+NC
Sbjct: 258 KGINFDLPHVISEAPAFPGVTHIGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYD 437
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
ALP GK+V E ++P +++P + + D+ ++
Sbjct: 438 ALPAHGKVVLVECILPVNPEATPEVQGVFHVDMIML 545
Score = 38.2 bits (77), Expect(2) = 2e-033
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -1 / +3
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF G+ TLVDVGG GA + I+ R P +
Sbjct: 171 GFEGLGTLVDVGGGVGATVGAIIARYPAV 257
>gb|BF260117.2|BF260117 HVSMEf0021C12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021C12f, mRNA sequence
Length = 797
Score = 124 bits (265), Expect(2) = 2e-032
Identities = 44/96 (45%), Positives = 67/96 (69%)
Frame = -1 / +1
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ AP+ GV H+GGDMF+ +PSGDAI MKW+L W+D+ C +L+NC
Sbjct: 124 KGINFDLPHVISEAPAFPGVTHIGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYD 303
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
ALP GK+V E ++P +++P + + D+ ++
Sbjct: 304 ALPAHGKVVLVECILPVNPEATPEVQGVFHVDMIML 411
Score = 34.5 bits (69), Expect(2) = 2e-032
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1 / +1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF G+ TLVDVGG A + I+ R P +
Sbjct: 37 GFEGLGTLVDVGGGVRATVGAIIARYPAV 123
>gb|AL505122.1|AL505122 AL505122 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07H11V 5', mRNA sequence
Length = 667
Score = 124 bits (265), Expect(2) = 6e-032
Identities = 46/95 (48%), Positives = 65/95 (68%)
Frame = -1 / +3
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ AP GV HVGGDMF+ IPSGDAI MKW+L W+D+ C +L+NC
Sbjct: 369 KGINFDLPHVISEAPPFPGVTHVGGDMFQKIPSGDAILMKWILHDWSDEHCATLLKNCYD 548
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFV 350
ALP GK+V E ++P +++P + + D+ +
Sbjct: 549 ALPAHGKVVLVECILPVNPEATPKAQGVFNLDMII 653
Score = 33.1 bits (66), Expect(2) = 6e-032
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1 / +3
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF G++TLVDVGG GA + I TI
Sbjct: 282 GFNGLSTLVDVGGGIGATVGAITAYYHTI 368
>gb|BF257029.2|BF257029 HVSMEf0011K17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011K17f, mRNA sequence
Length = 582
Score = 121 bits (258), Expect(2) = 6e-031
Identities = 46/96 (47%), Positives = 65/96 (67%)
Frame = -1 / +3
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ AP GV HVGGDMF+ IPSGDAI MKW+L W+D+ C +L+NC
Sbjct: 195 KGINFDLPHVISEAPLFPGVTHVGGDMFQKIPSGDAILMKWILHDWSDEHCATLLKNCYD 374
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
ALP GK+V E ++P ++P + + D+ ++
Sbjct: 375 ALPAHGKVVLVECILPVNP*ATPKAQGVFNLDMIML 482
Score = 33.1 bits (66), Expect(2) = 6e-031
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1 / +3
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF G++TLVDVGG GA + I TI
Sbjct: 108 GFNGLSTLVDVGGGIGATVGAITAYYHTI 194
>gb|AV920163.1|AV920163 AV920163 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9i11 3', mRNA sequence
Length = 749
Score = 119 bits (254), Expect(2) = 7e-030
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = -1 / -2
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V+A AP GV+HV GDMF+++PSGDAI +KW+L WTD+ C +LRNC
Sbjct: 535 KGINFDLPHVIADAPQCPGVQHVAGDMFRNVPSGDAIILKWMLHNWTDEHCTTLLRNCYD 356
Query: 454 ALPDGGKLVACEPVVPEETDSS 389
ALP GK+ E ++P + D++
Sbjct: 355 ALPPHGKVFIVENILPLKPDAT 290
Score = 31.3 bits (62), Expect(2) = 7e-030
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1 / -2
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF +A LVDVGG G + I + P I
Sbjct: 622 GFHDIAFLVDVGGGVGTTIRAITSKYPHI 536
>gb|AV917656.1|AV917656 AV917656 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10o13 3', mRNA sequence
Length = 700
Score = 119 bits (254), Expect(2) = 7e-030
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = -1 / -1
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V+A AP GV+HV GDMF+++PSGDAI +KW+L WTD+ C +LRNC
Sbjct: 535 KGINFDLPHVIADAPQCPGVQHVAGDMFRNVPSGDAIILKWMLHNWTDEHCTTLLRNCYD 356
Query: 454 ALPDGGKLVACEPVVPEETDSS 389
ALP GK+ E ++P + D++
Sbjct: 355 ALPPHGKVFIVENILPLKPDAT 290
Score = 31.3 bits (62), Expect(2) = 7e-030
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1 / -1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF +A LVDVGG G + I + P I
Sbjct: 622 GFHDIAFLVDVGGGVGTTIRAITSKYPHI 536
>gb|BJ466471.1|BJ466471 BJ466471 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32e17 3', mRNA sequence
Length = 693
Score = 119 bits (254), Expect(2) = 7e-030
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = -1 / -3
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V+A AP GV+HV GDMF+++PSGDAI +KW+L WTD+ C +LRNC
Sbjct: 502 KGINFDLPHVIADAPQCPGVQHVAGDMFRNVPSGDAIILKWMLHNWTDEHCTTLLRNCYD 323
Query: 454 ALPDGGKLVACEPVVPEETDSS 389
ALP GK+ E ++P + D++
Sbjct: 322 ALPPHGKVFIVENILPLKPDAT 257
Score = 31.3 bits (62), Expect(2) = 7e-030
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1 / -3
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF +A LVDVGG G + I + P I
Sbjct: 589 GFHDIAFLVDVGGGVGTTIRAITSKYPHI 503
>gb|AV930818.1|AV930818 AV930818 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25f17 3', mRNA sequence
Length = 680
Score = 119 bits (254), Expect(2) = 7e-030
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = -1 / -2
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V+A AP GV+HV GDMF+++PSGDAI +KW+L WTD+ C +LRNC
Sbjct: 526 KGINFDLPHVIADAPQCPGVQHVAGDMFRNVPSGDAIILKWMLHNWTDEHCTTLLRNCYD 347
Query: 454 ALPDGGKLVACEPVVPEETDSS 389
ALP GK+ E ++P + D++
Sbjct: 346 ALPPHGKVFIVENILPLKPDAT 281
Score = 31.3 bits (62), Expect(2) = 7e-030
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1 / -2
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF +A LVDVGG G + I + P I
Sbjct: 613 GFHDIAFLVDVGGGVGTTIRAITSKYPHI 527
>gb|BJ466353.1|BJ466353 BJ466353 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31l22 3', mRNA sequence
Length = 665
Score = 119 bits (254), Expect(2) = 7e-030
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = -1 / -2
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V+A AP GV+HV GDMF+++PSGDAI +KW+L WTD+ C +LRNC
Sbjct: 499 KGINFDLPHVIADAPQCPGVQHVAGDMFRNVPSGDAIILKWMLHNWTDEHCTTLLRNCYD 320
Query: 454 ALPDGGKLVACEPVVPEETDSS 389
ALP GK+ E ++P + D++
Sbjct: 319 ALPPHGKVFIVENILPLKPDAT 254
Score = 31.3 bits (62), Expect(2) = 7e-030
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1 / -2
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF +A LVDVGG G + I + P I
Sbjct: 586 GFHDIAFLVDVGGGVGTTIRAITSKYPHI 500
>gb|BJ466778.1|BJ466778 BJ466778 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33n24 3', mRNA sequence
Length = 666
Score = 119 bits (254), Expect(2) = 7e-030
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = -1 / -3
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V+A AP GV+HV GDMF+++PSGDAI +KW+L WTD+ C +LRNC
Sbjct: 529 KGINFDLPHVIADAPQCPGVQHVAGDMFRNVPSGDAIILKWMLHNWTDEHCTTLLRNCYD 350
Query: 454 ALPDGGKLVACEPVVPEETDSS 389
ALP GK+ E ++P + D++
Sbjct: 349 ALPPHGKVFIVENILPLKPDAT 284
Score = 31.3 bits (62), Expect(2) = 7e-030
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1 / -3
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF +A LVDVGG G + I + P I
Sbjct: 616 GFHDIAFLVDVGGGVGTTIRAITSKYPHI 530
>gb|BJ468102.1|BJ468102 BJ468102 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37b21 3', mRNA sequence
Length = 658
Score = 119 bits (254), Expect(2) = 7e-030
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = -1 / -1
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V+A AP GV+HV GDMF+++PSGDAI +KW+L WTD+ C +LRNC
Sbjct: 535 KGINFDLPHVIADAPQCPGVQHVAGDMFRNVPSGDAIILKWMLHNWTDEHCTTLLRNCYD 356
Query: 454 ALPDGGKLVACEPVVPEETDSS 389
ALP GK+ E ++P + D++
Sbjct: 355 ALPPHGKVFIVENILPLKPDAT 290
Score = 31.3 bits (62), Expect(2) = 7e-030
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1 / -1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF +A LVDVGG G + I + P I
Sbjct: 622 GFHDIAFLVDVGGGVGTTIRAITSKYPHI 536
>gb|BQ472105.1|BQ472105 HV04G21r HV Hordeum vulgare subsp. vulgare cDNA clone HV04G21
5-PRIME, mRNA sequence
Length = 607
Score = 119 bits (254), Expect(2) = 7e-030
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = -1 / +1
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V+A AP GV+HV GDMF+++PSGDAI +KW+L WTD+ C +LRNC
Sbjct: 136 KGINFDLPHVIADAPQCPGVQHVAGDMFRNVPSGDAIILKWMLHNWTDEHCTTLLRNCYD 315
Query: 454 ALPDGGKLVACEPVVPEETDSS 389
ALP GK+ E ++P + D++
Sbjct: 316 ALPPHGKVFIVENILPLKPDAT 381
Score = 31.3 bits (62), Expect(2) = 7e-030
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1 / +1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF +A LVDVGG G + I + P I
Sbjct: 49 GFHDIAFLVDVGGGVGTTIRAITSKYPHI 135
>gb|BQ471958.1|BQ471958 HV03P22r HV Hordeum vulgare subsp. vulgare cDNA clone HV03P22
5-PRIME, mRNA sequence
Length = 482
Score = 119 bits (254), Expect(2) = 7e-030
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = -1 / +3
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V+A AP GV+HV GDMF+++PSGDAI +KW+L WTD+ C +LRNC
Sbjct: 138 KGINFDLPHVIADAPQCPGVQHVAGDMFRNVPSGDAIILKWMLHNWTDEHCTTLLRNCYD 317
Query: 454 ALPDGGKLVACEPVVPEETDSS 389
ALP GK+ E ++P + D++
Sbjct: 318 ALPPHGKVFIVENILPLKPDAT 383
Score = 31.3 bits (62), Expect(2) = 7e-030
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1 / +3
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF +A LVDVGG G + I + P I
Sbjct: 51 GFHDIAFLVDVGGGVGTTIRAITSKYPHI 137
>gb|BF260877.2|BF260877 HVSMEf0023C21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023C21f, mRNA sequence
Length = 752
Score = 120 bits (257), Expect(2) = 2e-029
Identities = 45/96 (46%), Positives = 67/96 (69%)
Frame = -1 / +2
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ A GV HVGGDMF+ +P+GDAI MKW+L ++DDEC +L+NC
Sbjct: 236 KGINFDLPHVISDAQPCPGVEHVGGDMFEKVPTGDAILMKWILNCFSDDECAILLKNCYD 415
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
ALP GK++ E ++P D++ T+ L+ D+ ++
Sbjct: 416 ALPAHGKVINVECILPVNPDATNSTQGLISVDVSLL 523
Score = 28.6 bits (56), Expect(2) = 2e-029
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1 / +2
Query: 283 AAGFTAFRAIYLDPFYAVLEYTK* 212
AAGFT +A Y+ + +EYTK*
Sbjct: 581 AAGFTGVKATYIYADFWAMEYTK* 652
>gb|BF256678.3|BF256678 HVSMEf0010L01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010L01f, mRNA sequence
Length = 645
Score = 120 bits (257), Expect(2) = 2e-029
Identities = 45/96 (46%), Positives = 67/96 (69%)
Frame = -1 / +2
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ A GV HVGGDMF+ +P+GDAI MKW+L ++DDEC +L+NC
Sbjct: 41 KGINFDLPHVISDAQPCPGVEHVGGDMFEKVPTGDAILMKWILNCFSDDECAILLKNCYD 220
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
ALP GK++ E ++P D++ T+ L+ D+ ++
Sbjct: 221 ALPAHGKVINVECILPVNPDATNSTQGLISVDVSLL 328
Score = 28.6 bits (56), Expect(2) = 2e-029
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1 / +2
Query: 283 AAGFTAFRAIYLDPFYAVLEYTK* 212
AAGFT +A Y+ + +EYTK*
Sbjct: 386 AAGFTGVKATYIYADFWAMEYTK* 457
>gb|BF255126.2|BF255126 HVSMEf0006A10f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006A10f, mRNA sequence
Length = 608
Score = 116 bits (247), Expect(2) = 6e-029
Identities = 44/89 (49%), Positives = 62/89 (69%)
Frame = -1 / +3
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ A GV HVGGDMF+ +PSGDAI MKW+L ++DDEC +L+NC
Sbjct: 168 KGINFDLPHVISDAQPYPGVEHVGGDMFEMVPSGDAILMKWILPCFSDDECAVLLKNCYD 347
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALL 368
ALP GK++ E ++P D++ + L+
Sbjct: 348 ALPAHGKVINVECILPVNPDATNNAQGLI 434
Score = 31.3 bits (62), Expect(2) = 6e-029
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1 / +3
Query: 283 AAGFTAFRAIYLDPFYAVLEYTK*SPL 203
AAGFT +A Y+ + +EYTK*S L
Sbjct: 513 AAGFTGVKASYIFANFWAMEYTK*SDL 593
>gb|BQ756546.1|BQ756546 EBem09_SQ003_A13_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ003_A13 5', mRNA sequence
Length = 530
Score = 118 bits (252), Expect(2) = 9e-029
Identities = 44/96 (45%), Positives = 66/96 (68%)
Frame = -1 / +3
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ A GV HVGGDMF+ +P+GDAI MKW+L ++DDEC +L+NC
Sbjct: 6 KGINFDLPHVISDAQPCPGVEHVGGDMFEKVPTGDAILMKWILNCFSDDECAILLKNCYD 185
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
ALP GK++ E ++P D++ + L+ D+ ++
Sbjct: 186 ALPAHGKVINVECILPVNPDATNSAQGLISVDVSLL 293
Score = 28.6 bits (56), Expect(2) = 9e-029
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1 / +3
Query: 283 AAGFTAFRAIYLDPFYAVLEYTK* 212
AAGFT +A Y+ + +EYTK*
Sbjct: 351 AAGFTGVKATYIYADFWAMEYTK* 422
>gb|BF257679.2|BF257679 HVSMEf0013I17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013I17f, mRNA sequence
Length = 524
Score = 112 bits (240), Expect(3) = 3e-028
Identities = 43/97 (44%), Positives = 63/97 (64%)
Frame = -1 / +2
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINF L V+ AP GV HVGGDMF+ IP GDAI MKW+L W+D+ C +L+NC
Sbjct: 152 KGINFHLAHVICEAPLYQGVTHVGGDMFQKIP*GDAILMKWILHDWSDEHCATLLKNCYD 331
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMT 344
ALP GK+V E ++P +++P + + D+ +++
Sbjct: 332 ALPAHGKVVLVECILPVNPEATPKAQGVFNLDMIMLS 442
Score = 26.7 bits (52), Expect(3) = 3e-028
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1 / +2
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF G+ TLV VGG G+ + I TI
Sbjct: 65 GFNGLTTLVVVGGCIGSTVGAITAYYHTI 151
Score = 23.1 bits (44), Expect(3) = 3e-028
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1 / +2
Query: 352 VMTPYRTQGRERSEEEFRHL 293
+M + GRER E EF+ L
Sbjct: 431 IMLSHNPGGRERYEREFKAL 490
>gb|BI959354.1|BI959354 HVSMEn0019F13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019F13f, mRNA sequence
Length = 648
Score = 124 bits (265), Expect = 7e-028
Identities = 44/96 (45%), Positives = 67/96 (69%)
Frame = -1 / -3
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ AP+ GV H+GGDMF+ +PSGDAI MKW+L W+D+ C +L+NC
Sbjct: 514 KGINFDLPHVISEAPAFPGVTHIGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYD 335
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
ALP GK+V E ++P +++P + + D+ ++
Sbjct: 334 ALPAHGKVVLVECILPVNPEATPEVQGVFHVDMIML 227
>gb|BM817348.1|BM817348 HC105H12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H12_T3.ab1 similar to Myo-inositol
4-O-methyltransferase,Methionine S-methyltransferase,
mRNA sequence
Length = 885
Score = 118 bits (252), Expect(2) = 1e-027
Identities = 44/96 (45%), Positives = 66/96 (68%)
Frame = -1 / +1
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ A GV HVGGDMF+ +P+GDAI MKW+L ++DDEC +L+NC
Sbjct: 454 KGINFDLPHVISDAQPCPGVEHVGGDMFEKVPTGDAILMKWILNCFSDDECAILLKNCYD 633
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
ALP GK++ E ++P D++ + L+ D+ ++
Sbjct: 634 ALPAHGKVINVECILPVNPDATNSAQGLISVDVSLL 741
Score = 24.9 bits (48), Expect(2) = 1e-027
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1 / +1
Query: 283 AAGFTAFRAIYLDPFYAVLEYT 218
AAGFT +A Y+ + +EYT
Sbjct: 799 AAGFTRVKATYIYADFWXMEYT 864
>gb|BI957415.1|BI957415 HVSMEn0009H02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009H02f, mRNA sequence
Length = 671
Score = 106 bits (227), Expect(2) = 3e-027
Identities = 37/63 (58%), Positives = 49/63 (77%)
Frame = -1 / +2
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ AP+ GV H+GGDMF+ +PSGDAI MKW+L W+D+ C +L+NC
Sbjct: 437 KGINFDLPHVISEAPAFPGVTHIGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYD 616
Query: 454 ALP 446
ALP
Sbjct: 617 ALP 625
Score = 35.0 bits (70), Expect(2) = 3e-027
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1 / +2
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF G+ TLVDVGG A + I+ R P +
Sbjct: 350 GFEGLGTLVDVGGGVXATVGAIIARYPAV 436
>gb|CB874364.1|CB874364 HX05A22w HX Hordeum vulgare subsp. vulgare cDNA clone HX05A22
3-PRIME, mRNA sequence
Length = 646
Score = 120 bits (257), Expect = 8e-027
Identities = 44/94 (46%), Positives = 64/94 (68%)
Frame = -1 / -2
Query: 628 INFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAAL 449
INFDLP V++ AP GV HVGGDMF+ +PSGDAI MKW+L W+D+ C +L+NC AL
Sbjct: 645 INFDLPHVISEAPPFPGVTHVGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYDAL 466
Query: 448 PDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
P GK+V E ++P +++P + + D+ ++
Sbjct: 465 PAHGKVVLVECILPVNPEATPKAQGVFHVDMIML 364
>gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, partial cds
Length = 983
Score = 105 bits (225), Expect(2) = 9e-027
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / +3
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 411 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 590
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 591 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFKGAKQRTEKE 734
Score = 34.1 bits (68), Expect(2) = 9e-027
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / +3
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 321 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 410
>gb|BJ467726.1|BJ467726 BJ467726 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29j04 3', mRNA sequence
Length = 724
Score = 105 bits (225), Expect(2) = 9e-027
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / -1
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 571 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 392
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 391 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFKGAKQRTEKE 248
Score = 34.1 bits (68), Expect(2) = 9e-027
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / -1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 661 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 572
>gb|AV917798.1|AV917798 AV917798 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11i24 3', mRNA sequence
Length = 723
Score = 105 bits (225), Expect(2) = 9e-027
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / -1
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 528 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 349
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 348 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFKGAKQRTEKE 205
Score = 34.1 bits (68), Expect(2) = 9e-027
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / -1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 618 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 529
>gb|BJ468391.1|BJ468391 BJ468391 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38j12 3', mRNA sequence
Length = 710
Score = 105 bits (225), Expect(2) = 9e-027
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / -2
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 547 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 368
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 367 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFKGAKQRTEKE 224
Score = 34.1 bits (68), Expect(2) = 9e-027
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / -2
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 637 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 548
>gb|AV922569.1|AV922569 AV922569 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18l16 3', mRNA sequence
Length = 708
Score = 105 bits (225), Expect(2) = 9e-027
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / -1
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 540 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 361
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 360 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFKGAKQRTEKE 217
Score = 34.1 bits (68), Expect(2) = 9e-027
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / -1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 630 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 541
>gb|AV921300.1|AV921300 AV921300 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1p02 3', mRNA sequence
Length = 682
Score = 105 bits (225), Expect(2) = 9e-027
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / -3
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 563 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 384
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 383 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFKGAKQRTEKE 240
Score = 34.1 bits (68), Expect(2) = 9e-027
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / -3
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 653 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 564
>gb|AV917391.1|AV917391 AV917391 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18l16 5', mRNA sequence
Length = 670
Score = 105 bits (225), Expect(2) = 9e-027
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / +1
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 181 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 360
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 361 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFKGAKQRTEKE 504
Score = 34.1 bits (68), Expect(2) = 9e-027
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / +1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 91 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 180
>gb|AV930903.1|AV930903 AV930903 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l15 3', mRNA sequence
Length = 670
Score = 105 bits (225), Expect(2) = 9e-027
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / -2
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 516 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 337
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 336 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFKGAKQRTEKE 193
Score = 34.1 bits (68), Expect(2) = 9e-027
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / -2
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 606 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 517
>gb|BJ465651.1|BJ465651 BJ465651 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24k04 3', mRNA sequence
Length = 672
Score = 105 bits (225), Expect(2) = 9e-027
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / -2
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 554 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 375
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 374 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFKGAKQRTEKE 231
Score = 34.1 bits (68), Expect(2) = 9e-027
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / -2
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 644 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 555
>gb|AV921493.1|AV921493 AV921493 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23j19 3', mRNA sequence
Length = 644
Score = 105 bits (225), Expect(2) = 9e-027
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / -1
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 527 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 348
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 347 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFKGAKQRTEKE 204
Score = 34.1 bits (68), Expect(2) = 9e-027
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / -1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 617 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 528
>gb|AV913720.1|AV913720 AV913720 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23a23 5', mRNA sequence
Length = 598
Score = 105 bits (225), Expect(2) = 9e-027
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / +2
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 179 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 358
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 359 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFKGAKQRTEKE 502
Score = 34.1 bits (68), Expect(2) = 9e-027
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / +2
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 89 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 178
>gb|AV918629.1|AV918629 AV918629 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21k23 3', mRNA sequence
Length = 642
Score = 105 bits (224), Expect(2) = 1e-026
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / -1
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 477 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 298
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 297 LPKDGKVIVVDGILPENPDSSLTARDAXTLDIIMFVLFKGAKQRTEKE 154
Score = 34.1 bits (68), Expect(2) = 1e-026
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / -1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 567 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 478
>gb|AV913461.1|AV913461 AV913461 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22c16 5', mRNA sequence
Length = 629
Score = 105 bits (224), Expect(2) = 1e-026
Identities = 42/99 (42%), Positives = 60/99 (60%)
Frame = -1 / +3
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 309 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 488
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYR 335
LP GK++ + ++PE DSS R DI + ++
Sbjct: 489 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFK 605
Score = 34.1 bits (68), Expect(2) = 1e-026
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / +3
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 219 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 308
>gb|AV915144.1|AV915144 AV915144 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13b02 5', mRNA sequence
Length = 580
Score = 105 bits (224), Expect(2) = 1e-026
Identities = 42/99 (42%), Positives = 60/99 (60%)
Frame = -1 / +1
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 271 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 450
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYR 335
LP GK++ + ++PE DSS R DI + ++
Sbjct: 451 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFK 567
Score = 34.1 bits (68), Expect(2) = 1e-026
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / +1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 181 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 270
>gb|AV918498.1|AV918498 AV918498 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21e05 3', mRNA sequence
Length = 585
Score = 119 bits (254), Expect = 2e-026
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = -1 / -3
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V+A AP GV+HV GDMF+++PSGDAI +KW+L WTD+ C +LRNC
Sbjct: 535 KGINFDLPHVIADAPQCPGVQHVAGDMFRNVPSGDAIILKWMLHNWTDEHCTTLLRNCYD 356
Query: 454 ALPDGGKLVACEPVVPEETDSS 389
ALP GK+ E ++P + D++
Sbjct: 355 ALPPHGKVFIVENILPLKPDAT 290
>gb|AV921873.1|AV921873 AV921873 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13m21 3', mRNA sequence
Length = 584
Score = 119 bits (254), Expect = 2e-026
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = -1 / -3
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V+A AP GV+HV GDMF+++PSGDAI +KW+L WTD+ C +LRNC
Sbjct: 534 KGINFDLPHVIADAPQCPGVQHVAGDMFRNVPSGDAIILKWMLHNWTDEHCTTLLRNCYD 355
Query: 454 ALPDGGKLVACEPVVPEETDSS 389
ALP GK+ E ++P + D++
Sbjct: 354 ALPPHGKVFIVENILPLKPDAT 289
>gb|BJ465136.1|BJ465136 BJ465136 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38b05 5', mRNA sequence
Length = 621
Score = 104 bits (222), Expect(2) = 2e-026
Identities = 42/95 (44%), Positives = 58/95 (61%)
Frame = -1 / +2
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 329 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 508
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
LP GK++ + ++PE DSS R DI +
Sbjct: 509 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIICL 613
Score = 34.1 bits (68), Expect(2) = 2e-026
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / +2
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 239 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 328
>gb|AV915892.1|AV915892 AV915892 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16h20 5', mRNA sequence
Length = 516
Score = 104 bits (222), Expect(2) = 2e-026
Identities = 42/94 (44%), Positives = 58/94 (61%)
Frame = -1 / +3
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 222 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 401
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFV 350
LP GK++ + ++PE DSS R DI +
Sbjct: 402 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIM 503
Score = 34.1 bits (68), Expect(2) = 2e-026
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / +3
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTIT 635
GF GV LVDVGG +G+ L MI + +T
Sbjct: 132 GFDGVQRLVDVGGGTGSTLGMITSKYKHMT 221
>gb|AV921750.1|AV921750 AV921750 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12k03 3', mRNA sequence
Length = 652
Score = 105 bits (225), Expect(2) = 6e-026
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / -2
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 564 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 385
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 384 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFKGAKQRTEKE 241
Score = 31.3 bits (62), Expect(2) = 6e-026
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1 / -2
Query: 721 FRGVATLVDVGGSSGACLEMIMRRVPTIT 635
F GV LVDVGG +G+ L MI + +T
Sbjct: 651 FDGVQRLVDVGGGTGSTLGMITSKYKHMT 565
>gb|BM444496.1|BM444496 EBem09_SQ005_H02_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_H02 5', mRNA sequence
Length = 333
Score = 116 bits (247), Expect = 2e-025
Identities = 43/96 (44%), Positives = 66/96 (68%)
Frame = -1 / +3
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ A GV HVGGDMF+ +P+GDAI M W+L+ ++DDEC +L+NC
Sbjct: 6 KGINFDLPHVISDAQPCPGVEHVGGDMFEKVPTGDAILMNWILSCFSDDECAILLKNCYD 185
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
ALP GK++ E ++P D++ + L+ D+ ++
Sbjct: 186 ALPAPGKVINVECILPVNPDATNSAQGLITVDVSLL 293
>gb|AV921717.1|AV921717 AV921717 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12h17 3', mRNA sequence
Length = 651
Score = 105 bits (225), Expect(2) = 2e-025
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1 / -3
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GIN+DLP V+A + GV HV GDM++SIP+GDA+ ++W+ DDE IL NC A
Sbjct: 565 GINYDLPHVIAQGLPLPGVEHVAGDMYESIPTGDAVLLQWITLMLNDDEFVKILSNCHNA 386
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVMTPYRTQGRERSEE 308
LP GK++ + ++PE DSS R DI + ++ + +E
Sbjct: 385 LPKDGKVIVVDGILPENPDSSLTARDAFTLDIIMFVLFKGAKQRTEKE 242
Score = 29.5 bits (58), Expect(2) = 2e-025
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1 / -3
Query: 715 GVATLVDVGGSSGACLEMIMRRVPTIT 635
GV LVDVGG +G+ L MI + +T
Sbjct: 646 GVQRLVDVGGGTGSTLGMITSKYKHMT 566
>gb|AV836827.1|AV836827 AV836827 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd13o12, mRNA
sequence
Length = 572
Score = 100 bits (214), Expect(2) = 1e-024
Identities = 41/95 (43%), Positives = 61/95 (64%)
Frame = -1 / -3
Query: 631 GINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAA 452
GINFDLP ++ APSI GV H+ G+MF +PSGDA+ +K VL D++C +L+NC A
Sbjct: 546 GINFDLPYAISLAPSIPGVEHIAGNMFDYVPSGDAVLLKTVLHILDDNDCIRLLKNCHGA 367
Query: 451 LPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
L D G+L+A E V+P + + + L D+ ++
Sbjct: 366 LSDKGRLIAVEFVLPGTPEVTRAAQNLFILDVMML 262
Score = 31.8 bits (63), Expect(2) = 1e-024
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1 / -3
Query: 328 GRERSEEEFRHLGVDAAGFTAFRAIYLDPFYAVLEYTK* 212
G+ER+EEEF L + F++ Y+ + LE+TK*
Sbjct: 246 GKERTEEEFLKLARQSGFSGTFQSTYIFGNFWALEFTK* 130
>gb|BF256785.2|BF256785 HVSMEf0011A04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011A04f, mRNA sequence
Length = 538
Score = 112 bits (240), Expect = 2e-024
Identities = 44/85 (51%), Positives = 59/85 (69%)
Frame = -1 / +2
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V++ A GV HVGGDMF+ +P+GDAI MKW+L ++DDEC +L+NC
Sbjct: 176 KGINFDLPHVISDAQPCPGVEHVGGDMFEKVPTGDAILMKWILNCFSDDECAILLKNCYH 355
Query: 454 ALPDGGKLVACEPVVPEETDSSPGT 380
ALP GK++ E ++P S P T
Sbjct: 356 ALPAHGKVINVECILPGLPASRPPT 430
>gb|BF259059.3|BF259059 HVSMEf0017I24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0017I24f, mRNA sequence
Length = 645
Score = 110 bits (235), Expect = 9e-024
Identities = 41/90 (45%), Positives = 60/90 (66%)
Frame = -1 / +3
Query: 616 LPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAALPDGG 437
LP V++ AP GV HVGGDMF+ IPSGDAI MKW+L W+D+ C +L+NC ALP G
Sbjct: 3 LPHVISEAPLFPGVTHVGGDMFQKIPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHG 182
Query: 436 KLVACEPVVPEETDSSPGTRALLENDIFVM 347
K+V E ++P +++P + + D+ ++
Sbjct: 183 KVVLVECILPVNPEATPKAQGVFNLDMIML 272
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 339,201,959
Number of Sequences: 312970
Number of extensions: 5560670
Number of successful extensions: 98525
Number of sequences better than 1.0e-020: 138
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 8799681451
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)