TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3183567.2.1
(681 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG417280.2|BG417280 HVSMEk0017B12f Hordeum vulgare testa... 247 4e-065
gb|AJ462887.1|AJ462887 AJ462887 S00002 Hordeum vulgare subs... 247 4e-065
gb|BJ464879.1|BJ464879 BJ464879 K. Sato unpublished cDNA li... 247 4e-065
gb|BQ659456.1|BQ659456 HE01G13u HE Hordeum vulgare subsp. v... 247 4e-065
gb|BU986660.1|BU986660 HF12I18r HF Hordeum vulgare subsp. v... 247 4e-065
gb|CB876565.1|CB876565 HX11K19w HX Hordeum vulgare subsp. v... 247 4e-065
gb|BU986619.1|BU986619 HF12G18r HF Hordeum vulgare subsp. v... 240 5e-063
gb|BG415468.1|BG415468 HVSMEk0006J19f Hordeum vulgare testa... 217 6e-056
gb|AJ462888.1|AJ462888 AJ462888 S00002 Hordeum vulgare subs... 177 6e-044
gb|BQ656895.1|BQ656895 HA01J12u HA Hordeum vulgare subsp. v... 172 1e-042
gb|BF256034.2|BF256034 HVSMEf0008I19f Hordeum vulgare seedl... 166 1e-040
gb|BU994365.1|BU994365 HM06M18r HM Hordeum vulgare subsp. v... 166 1e-040
gb|BI958231.1|BI958231 HVSMEn0013P22f Hordeum vulgare rachi... 131 3e-030
gb|BI960422.1|BI960422 HVSMEn0024I18f Hordeum vulgare rachi... 128 2e-029
gb|CB874607.1|CB874607 HX05M10w HX Hordeum vulgare subsp. v... 126 1e-028
gb|BQ660428.1|BQ660428 HI02H22u HI Hordeum vulgare subsp. v... 102 2e-021
>gb|BG417280.2|BG417280 HVSMEk0017B12f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017B12f, mRNA sequence
Length = 886
Score = 247 bits (534), Expect = 4e-065
Identities = 96/122 (78%), Positives = 106/122 (86%)
Frame = -2 / +1
Query: 671 GGGIKADLLXXPEYLEQNATLAFMAAMWRWMTPIKKSQPSAHDAFVGNWKPTKNDTLSKR 492
G GIK DLL PE LEQNATLAF AA+WRWMTP+K+ QPSAHDAFVGNWKPTK DTLSKR
Sbjct: 247 GKGIKQDLLNHPELLEQNATLAFEAAIWRWMTPMKRKQPSAHDAFVGNWKPTKKDTLSKR 426
Query: 491 LPGFGATMNILYGESICGKGYVDAMNVIISHYQYYLDLMGVGREHSGDNRDCAEQAPFNP 312
PGFG TMNILYG++ICGKG ++MN IISHYQ+YLDLMGVG +HSGDN DCA+Q PFNP
Sbjct: 427 YPGFGVTMNILYGDAICGKGTTESMNAIISHYQHYLDLMGVGVQHSGDNLDCADQVPFNP 606
Query: 311 SS 306
SS
Sbjct: 607 SS 612
Score = 164 bits (352), Expect = 6e-040
Identities = 76/121 (62%), Positives = 86/121 (71%)
Frame = +1 / -3
Query: 310 EGLNGACSAQSRLSPECSRPTPMRSR*YW*CEIITFMASTYPLPQIDSP*SMFMVAPNPG 489
+GLNG SAQS+LSPEC PTP++SR* * +I+ F+ S PLPQ+ SP MF+V P PG
Sbjct: 608 DGLNGTWSAQSKLSPEC*TPTPIKSR*C**WDIMAFILSVVPLPQMASPYKMFIVTPKPG 429
Query: 490 RRLLSVSFLVGFQLPTKASCADGWLFLIGVIHRHIAAMNASVAFCSRYSGXXSRSALIPP 669
L VSFLVGFQLPTKAS ADG IGVIH IAA NA VAFCS SG +RS LIP
Sbjct: 428 YLLDKVSFLVGFQLPTKASWADGCFLFIGVIHLQIAASNARVAFCSNNSGWFNRSCLIPL 249
Query: 670 P 672
P
Sbjct: 248 P 246
>gb|AJ462887.1|AJ462887 AJ462887 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200008A03F1, mRNA sequence
Length = 420
Score = 247 bits (534), Expect = 4e-065
Identities = 96/122 (78%), Positives = 106/122 (86%)
Frame = -2 / +3
Query: 671 GGGIKADLLXXPEYLEQNATLAFMAAMWRWMTPIKKSQPSAHDAFVGNWKPTKNDTLSKR 492
G GIK DLL PE LEQNATLAF AA+WRWMTP+K+ QPSAHDAFVGNWKPTK DTLSKR
Sbjct: 21 GKGIKQDLLNHPELLEQNATLAFEAAIWRWMTPMKRKQPSAHDAFVGNWKPTKKDTLSKR 200
Query: 491 LPGFGATMNILYGESICGKGYVDAMNVIISHYQYYLDLMGVGREHSGDNRDCAEQAPFNP 312
PGFG TMNILYG++ICGKG ++MN IISHYQ+YLDLMGVG +HSGDN DCA+Q PFNP
Sbjct: 201 YPGFGVTMNILYGDAICGKGTTESMNAIISHYQHYLDLMGVGVQHSGDNLDCADQVPFNP 380
Query: 311 SS 306
SS
Sbjct: 381 SS 386
Score = 164 bits (352), Expect = 6e-040
Identities = 76/121 (62%), Positives = 86/121 (71%)
Frame = +1 / -3
Query: 310 EGLNGACSAQSRLSPECSRPTPMRSR*YW*CEIITFMASTYPLPQIDSP*SMFMVAPNPG 489
+GLNG SAQS+LSPEC PTP++SR* * +I+ F+ S PLPQ+ SP MF+V P PG
Sbjct: 382 DGLNGTWSAQSKLSPEC*TPTPIKSR*C**WDIMAFILSVVPLPQMASPYKMFIVTPKPG 203
Query: 490 RRLLSVSFLVGFQLPTKASCADGWLFLIGVIHRHIAAMNASVAFCSRYSGXXSRSALIPP 669
L VSFLVGFQLPTKAS ADG IGVIH IAA NA VAFCS SG +RS LIP
Sbjct: 202 YLLDKVSFLVGFQLPTKASWADGCFLFIGVIHLQIAASNARVAFCSNNSGWFNRSCLIPL 23
Query: 670 P 672
P
Sbjct: 22 P 20
>gb|BJ464879.1|BJ464879 BJ464879 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36g21 5', mRNA sequence
Length = 667
Score = 247 bits (534), Expect = 4e-065
Identities = 96/122 (78%), Positives = 106/122 (86%)
Frame = -2 / +3
Query: 671 GGGIKADLLXXPEYLEQNATLAFMAAMWRWMTPIKKSQPSAHDAFVGNWKPTKNDTLSKR 492
G GIK DLL PE LEQNATLAF AA+WRWMTP+K+ QPSAHDAFVGNWKPTK DTLSKR
Sbjct: 216 GKGIKQDLLNHPELLEQNATLAFEAAIWRWMTPMKRKQPSAHDAFVGNWKPTKKDTLSKR 395
Query: 491 LPGFGATMNILYGESICGKGYVDAMNVIISHYQYYLDLMGVGREHSGDNRDCAEQAPFNP 312
PGFG TMNILYG++ICGKG ++MN IISHYQ+YLDLMGVG +HSGDN DCA+Q PFNP
Sbjct: 396 YPGFGVTMNILYGDAICGKGTTESMNAIISHYQHYLDLMGVGVQHSGDNLDCADQVPFNP 575
Query: 311 SS 306
SS
Sbjct: 576 SS 581
Score = 164 bits (352), Expect = 6e-040
Identities = 76/121 (62%), Positives = 86/121 (71%)
Frame = +1 / -1
Query: 310 EGLNGACSAQSRLSPECSRPTPMRSR*YW*CEIITFMASTYPLPQIDSP*SMFMVAPNPG 489
+GLNG SAQS+LSPEC PTP++SR* * +I+ F+ S PLPQ+ SP MF+V P PG
Sbjct: 577 DGLNGTWSAQSKLSPEC*TPTPIKSR*C**WDIMAFILSVVPLPQMASPYKMFIVTPKPG 398
Query: 490 RRLLSVSFLVGFQLPTKASCADGWLFLIGVIHRHIAAMNASVAFCSRYSGXXSRSALIPP 669
L VSFLVGFQLPTKAS ADG IGVIH IAA NA VAFCS SG +RS LIP
Sbjct: 397 YLLDKVSFLVGFQLPTKASWADGCFLFIGVIHLQIAASNARVAFCSNNSGWFNRSCLIPL 218
Query: 670 P 672
P
Sbjct: 217 P 215
>gb|BQ659456.1|BQ659456 HE01G13u HE Hordeum vulgare subsp. vulgare cDNA clone HE01G13
3-PRIME, mRNA sequence
Length = 550
Score = 247 bits (534), Expect = 4e-065
Identities = 96/122 (78%), Positives = 106/122 (86%)
Frame = -2 / -1
Query: 671 GGGIKADLLXXPEYLEQNATLAFMAAMWRWMTPIKKSQPSAHDAFVGNWKPTKNDTLSKR 492
G GIK DLL PE LEQNATLAF AA+WRWMTP+K+ QPSAHDAFVGNWKPTK DTLSKR
Sbjct: 541 GKGIKQDLLNHPELLEQNATLAFEAAIWRWMTPMKRKQPSAHDAFVGNWKPTKKDTLSKR 362
Query: 491 LPGFGATMNILYGESICGKGYVDAMNVIISHYQYYLDLMGVGREHSGDNRDCAEQAPFNP 312
PGFG TMNILYG++ICGKG ++MN IISHYQ+YLDLMGVG +HSGDN DCA+Q PFNP
Sbjct: 361 YPGFGVTMNILYGDAICGKGTTESMNAIISHYQHYLDLMGVGVQHSGDNLDCADQVPFNP 182
Query: 311 SS 306
SS
Sbjct: 181 SS 176
Score = 164 bits (352), Expect = 6e-040
Identities = 76/121 (62%), Positives = 86/121 (71%)
Frame = +1 / +3
Query: 310 EGLNGACSAQSRLSPECSRPTPMRSR*YW*CEIITFMASTYPLPQIDSP*SMFMVAPNPG 489
+GLNG SAQS+LSPEC PTP++SR* * +I+ F+ S PLPQ+ SP MF+V P PG
Sbjct: 180 DGLNGTWSAQSKLSPEC*TPTPIKSR*C**WDIMAFILSVVPLPQMASPYKMFIVTPKPG 359
Query: 490 RRLLSVSFLVGFQLPTKASCADGWLFLIGVIHRHIAAMNASVAFCSRYSGXXSRSALIPP 669
L VSFLVGFQLPTKAS ADG IGVIH IAA NA VAFCS SG +RS LIP
Sbjct: 360 YLLDKVSFLVGFQLPTKASWADGCFLFIGVIHLQIAASNARVAFCSNNSGWFNRSCLIPL 539
Query: 670 P 672
P
Sbjct: 540 P 542
>gb|BU986660.1|BU986660 HF12I18r HF Hordeum vulgare subsp. vulgare cDNA clone HF12I18
5-PRIME, mRNA sequence
Length = 636
Score = 247 bits (534), Expect = 4e-065
Identities = 96/122 (78%), Positives = 106/122 (86%)
Frame = -2 / +2
Query: 671 GGGIKADLLXXPEYLEQNATLAFMAAMWRWMTPIKKSQPSAHDAFVGNWKPTKNDTLSKR 492
G GIK DLL PE LEQNATLAF AA+WRWMTP+K+ QPSAHDAFVGNWKPTK DTLSKR
Sbjct: 248 GKGIKQDLLNHPELLEQNATLAFEAAIWRWMTPMKRKQPSAHDAFVGNWKPTKKDTLSKR 427
Query: 491 LPGFGATMNILYGESICGKGYVDAMNVIISHYQYYLDLMGVGREHSGDNRDCAEQAPFNP 312
PGFG TMNILYG++ICGKG ++MN IISHYQ+YLDLMGVG +HSGDN DCA+Q PFNP
Sbjct: 428 YPGFGVTMNILYGDAICGKGTTESMNAIISHYQHYLDLMGVGVQHSGDNLDCADQVPFNP 607
Query: 311 SS 306
SS
Sbjct: 608 SS 613
Score = 164 bits (352), Expect = 6e-040
Identities = 76/121 (62%), Positives = 86/121 (71%)
Frame = +1 / -1
Query: 310 EGLNGACSAQSRLSPECSRPTPMRSR*YW*CEIITFMASTYPLPQIDSP*SMFMVAPNPG 489
+GLNG SAQS+LSPEC PTP++SR* * +I+ F+ S PLPQ+ SP MF+V P PG
Sbjct: 609 DGLNGTWSAQSKLSPEC*TPTPIKSR*C**WDIMAFILSVVPLPQMASPYKMFIVTPKPG 430
Query: 490 RRLLSVSFLVGFQLPTKASCADGWLFLIGVIHRHIAAMNASVAFCSRYSGXXSRSALIPP 669
L VSFLVGFQLPTKAS ADG IGVIH IAA NA VAFCS SG +RS LIP
Sbjct: 429 YLLDKVSFLVGFQLPTKASWADGCFLFIGVIHLQIAASNARVAFCSNNSGWFNRSCLIPL 250
Query: 670 P 672
P
Sbjct: 249 P 247
>gb|CB876565.1|CB876565 HX11K19w HX Hordeum vulgare subsp. vulgare cDNA clone HX11K19
3-PRIME, mRNA sequence
Length = 618
Score = 247 bits (534), Expect = 4e-065
Identities = 96/122 (78%), Positives = 106/122 (86%)
Frame = -2 / -3
Query: 671 GGGIKADLLXXPEYLEQNATLAFMAAMWRWMTPIKKSQPSAHDAFVGNWKPTKNDTLSKR 492
G GIK DLL PE LEQNATLAF AA+WRWMTP+K+ QPSAHDAFVGNWKPTK DTLSKR
Sbjct: 568 GKGIKQDLLNHPELLEQNATLAFEAAIWRWMTPMKRKQPSAHDAFVGNWKPTKKDTLSKR 389
Query: 491 LPGFGATMNILYGESICGKGYVDAMNVIISHYQYYLDLMGVGREHSGDNRDCAEQAPFNP 312
PGFG TMNILYG++ICGKG ++MN IISHYQ+YLDLMGVG +HSGDN DCA+Q PFNP
Sbjct: 388 YPGFGVTMNILYGDAICGKGTTESMNAIISHYQHYLDLMGVGVQHSGDNLDCADQVPFNP 209
Query: 311 SS 306
SS
Sbjct: 208 SS 203
Score = 164 bits (352), Expect = 6e-040
Identities = 76/121 (62%), Positives = 86/121 (71%)
Frame = +1 / +3
Query: 310 EGLNGACSAQSRLSPECSRPTPMRSR*YW*CEIITFMASTYPLPQIDSP*SMFMVAPNPG 489
+GLNG SAQS+LSPEC PTP++SR* * +I+ F+ S PLPQ+ SP MF+V P PG
Sbjct: 207 DGLNGTWSAQSKLSPEC*TPTPIKSR*C**WDIMAFILSVVPLPQMASPYKMFIVTPKPG 386
Query: 490 RRLLSVSFLVGFQLPTKASCADGWLFLIGVIHRHIAAMNASVAFCSRYSGXXSRSALIPP 669
L VSFLVGFQLPTKAS ADG IGVIH IAA NA VAFCS SG +RS LIP
Sbjct: 387 YLLDKVSFLVGFQLPTKASWADGCFLFIGVIHLQIAASNARVAFCSNNSGWFNRSCLIPL 566
Query: 670 P 672
P
Sbjct: 567 P 569
>gb|BU986619.1|BU986619 HF12G18r HF Hordeum vulgare subsp. vulgare cDNA clone HF12G18
5-PRIME, mRNA sequence
Length = 606
Score = 240 bits (519), Expect = 5e-063
Identities = 93/119 (78%), Positives = 103/119 (86%)
Frame = -2 / +2
Query: 671 GGGIKADLLXXPEYLEQNATLAFMAAMWRWMTPIKKSQPSAHDAFVGNWKPTKNDTLSKR 492
G GIK DLL PE LEQNATLAF AA+WRWMTP+K+ QPSAHDAFVGNWKPTK DTLSKR
Sbjct: 248 GKGIKQDLLNHPELLEQNATLAFEAAIWRWMTPMKRKQPSAHDAFVGNWKPTKKDTLSKR 427
Query: 491 LPGFGATMNILYGESICGKGYVDAMNVIISHYQYYLDLMGVGREHSGDNRDCAEQAPFN 315
PGFG TMNILYG++ICGKG ++MN IISHYQ+YLDLMGVG +HSGDN DCA+Q PFN
Sbjct: 428 YPGFGVTMNILYGDAICGKGTTESMNAIISHYQHYLDLMGVGVQHSGDNLDCADQVPFN 604
Score = 163 bits (350), Expect = 1e-039
Identities = 76/120 (63%), Positives = 85/120 (70%)
Frame = +1 / -1
Query: 313 GLNGACSAQSRLSPECSRPTPMRSR*YW*CEIITFMASTYPLPQIDSP*SMFMVAPNPGR 492
GLNG SAQS+LSPEC PTP++SR* * +I+ F+ S PLPQ+ SP MF+V P PG
Sbjct: 606 GLNGTWSAQSKLSPEC*TPTPIKSR*C**WDIMAFILSVVPLPQMASPYKMFIVTPKPGY 427
Query: 493 RLLSVSFLVGFQLPTKASCADGWLFLIGVIHRHIAAMNASVAFCSRYSGXXSRSALIPPP 672
L VSFLVGFQLPTKAS ADG IGVIH IAA NA VAFCS SG +RS LIP P
Sbjct: 426 LLDKVSFLVGFQLPTKASWADGCFLFIGVIHLQIAASNARVAFCSNNSGWFNRSCLIPLP 247
>gb|BG415468.1|BG415468 HVSMEk0006J19f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0006J19f, mRNA sequence
Length = 666
Score = 217 bits (468), Expect = 6e-056
Identities = 83/97 (85%), Positives = 89/97 (91%)
Frame = -2 / +2
Query: 599 AAMWRWMTPIKKSQPSAHDAFVGNWKPTKNDTLSKRLPGFGATMNILYGESICGKGYVDA 420
AAMWRWMTPIKK QPSAH+AF G WKPTKNDTLSKRLPGFGATMN+LYGESICG+G++D
Sbjct: 2 AAMWRWMTPIKKKQPSAHEAFTGVWKPTKNDTLSKRLPGFGATMNLLYGESICGRGFIDE 181
Query: 419 MNVIISHYQYYLDLMGVGREHSGDNRDCAEQAPFNPS 309
MNVIISHYQYYLDLMG GRE SG N DCAEQAPFNP+
Sbjct: 182 MNVIISHYQYYLDLMGFGRERSGLNLDCAEQAPFNPA 292
Score = 176 bits (379), Expect = 1e-043
Identities = 78/109 (71%), Positives = 85/109 (77%)
Frame = +1 / -1
Query: 274 PDCCCFWSSVGLEGLNGACSAQSRLSPECSRPTPMRSR*YW*CEIITFMASTYPLPQIDS 453
P C SS GL GACSAQSRL PE SRP PMRSR*YW* E++TF++S PLPQ+DS
Sbjct: 327 PPVGCCSSSFLGAGLKGACSAQSRLRPERSRPKPMRSR*YW*WEMMTFISSMKPLPQMDS 148
Query: 454 P*SMFMVAPNPGRRLLSVSFLVGFQLPTKASCADGWLFLIGVIHRHIAA 600
P* FMVAP PGRRLLSVSFLVGF P KASCADG FL+GVIHRH+AA
Sbjct: 147 P*RRFMVAPKPGRRLLSVSFLVGFHTPVKASCADGCFFLMGVIHRHMAA 1
Score = 155 bits (334), Expect = 2e-037
Identities = 71/106 (66%), Positives = 78/106 (73%)
Frame = -1 / +1
Query: 600 GGDVAVDDADQEEPAVGARRLRGQLEAHQERHAQQTPAWVRRHHEHTLRRVDLRQGIRRR 421
GG VAVDDA QEE AVGAR L G +EAHQERHAQQ P +RRHHE LRRV LRQG+ RR
Sbjct: 1 GGHVAVDDAHQEEAAVGARGLHGGVEAHQERHAQQAPPGLRRHHEPPLRRVHLRQGLHRR 180
Query: 420 HERYNLALPVLP*PHGRRP*ALWRQP*LRRAGTVQPLQPDG*PEAA 283
ER++L LPVLP PHG RP AL QP LRRAG +QP +G AA
Sbjct: 181 DERHHLPLPVLPRPHGLRPRALRPQPRLRRAGPLQPRPQEGRRAAA 318
Score = 113 bits (241), Expect = 1e-024
Identities = 54/85 (63%), Positives = 63/85 (74%)
Frame = +3 / -3
Query: 294 VIRRAGGVERCLLGAITVVARVLTADAHEVKVILVVRDYNVHGVDVSLAADRLAVEYVHG 473
V+ GGVE LLGA+ V A L A+AHEV+V+LVV D +VH VD + AAD LAVE VHG
Sbjct: 307 VVLLGGGVEGGLLGAVEVEAGALAAEAHEVEVVLVVGDDDVHLVDEAPAADGLAVEEVHG 128
Query: 474 GAEPRQAFAERVVLGGLPVAHEGVV 548
GAE R+A AERVVLGGLP EG+V
Sbjct: 127 GAEAREALAERVVLGGLPHPREGLV 53
>gb|AJ462888.1|AJ462888 AJ462888 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200009A03F1, mRNA sequence
Length = 300
Score = 177 bits (381), Expect = 6e-044
Identities = 70/93 (75%), Positives = 77/93 (82%)
Frame = -2 / +3
Query: 671 GGGIKADLLXXPEYLEQNATLAFMAAMWRWMTPIKKSQPSAHDAFVGNWKPTKNDTLSKR 492
G GIK DLL PE LEQNATLAF AA+WRWMTP+K+ QPSAHDAFV WKPTK DTL KR
Sbjct: 21 GKGIKQDLLNHPELLEQNATLAFEAAIWRWMTPMKRKQPSAHDAFVFYWKPTKKDTLPKR 200
Query: 491 LPGFGATMNILYGESICGKGYVDAMNVIISHYQ 393
PGFG TMNILYG++ICGKG ++MN IISHYQ
Sbjct: 201 YPGFGVTMNILYGDAICGKGTTESMNAIISHYQ 299
Score = 115 bits (246), Expect = 2e-025
Identities = 54/90 (60%), Positives = 60/90 (66%)
Frame = +1 / -3
Query: 403 EIITFMASTYPLPQIDSP*SMFMVAPNPGRRLLSVSFLVGFQLPTKASCADGWLFLIGVI 582
+I+ F+ S PLPQ+ SP MF+V P PG L VSFLVGFQ TKAS ADG IGVI
Sbjct: 289 DIMAFILSVVPLPQMASPYKMFIVTPKPGYLLGKVSFLVGFQ*KTKASWADGCFLFIGVI 110
Query: 583 HRHIAAMNASVAFCSRYSGXXSRSALIPPP 672
H IAA NA VAFCS SG +RS LIP P
Sbjct: 109 HLQIAASNARVAFCSNNSGWFNRSCLIPLP 20
>gb|BQ656895.1|BQ656895 HA01J12u HA Hordeum vulgare subsp. vulgare cDNA clone HA01J12
3-PRIME, mRNA sequence
Length = 423
Score = 172 bits (371), Expect = 1e-042
Identities = 65/82 (79%), Positives = 73/82 (89%)
Frame = -2 / -3
Query: 551 AHDAFVGNWKPTKNDTLSKRLPGFGATMNILYGESICGKGYVDAMNVIISHYQYYLDLMG 372
AHDAFVGNWKPTK D+LSKR PGFG TMNILYG++ICGKG ++MN IISHYQ+YLDLMG
Sbjct: 421 AHDAFVGNWKPTKKDSLSKRYPGFGVTMNILYGDAICGKGTTESMNAIISHYQHYLDLMG 242
Query: 371 VGREHSGDNRDCAEQAPFNPSS 306
VG +HSGDN DCA+Q PFNPSS
Sbjct: 241 VGVQHSGDNLDCADQVPFNPSS 176
Score = 108 bits (231), Expect = 3e-023
Identities = 50/81 (61%), Positives = 59/81 (72%)
Frame = +1 / +3
Query: 310 EGLNGACSAQSRLSPECSRPTPMRSR*YW*CEIITFMASTYPLPQIDSP*SMFMVAPNPG 489
+GLNG SAQS+LSPEC PTP++SR* * +I+ F+ S PLPQ+ SP MF+V P PG
Sbjct: 180 DGLNGTWSAQSKLSPEC*TPTPIKSR*C**WDIMAFILSVVPLPQMASPYKMFIVTPKPG 359
Query: 490 RRLLSVSFLVGFQLPTKASCA 552
L SFLVGFQLPTKAS A
Sbjct: 360 YLLDKESFLVGFQLPTKASWA 422
>gb|BF256034.2|BF256034 HVSMEf0008I19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0008I19f, mRNA sequence
Length = 1033
Score = 166 bits (357), Expect = 1e-040
Identities = 69/90 (76%), Positives = 74/90 (82%)
Frame = -2 / +3
Query: 674 AGGGIKADLLXXPEYLEQNATLAFMAAMWRWMTPIKKSQPSAHDAFVGNWKPTKNDTLSK 495
AG G+K DLL PE LEQNATLAF AAMWRWMTPIKK QPSAH+AF G WKPTKNDTLSK
Sbjct: 306 AGDGLKVDLLHHPELLEQNATLAFAAAMWRWMTPIKKKQPSAHEAFTGVWKPTKNDTLSK 485
Query: 494 RLPGFGATMNILYGESICGKGYVDAMNVII 405
RLPG GATMN+L GESI +G V MNV+I
Sbjct: 486 RLPGLGATMNLLCGESIGCRGLVCEMNVLI 575
Score = 144 bits (310), Expect = 3e-034
Identities = 64/94 (68%), Positives = 70/94 (74%)
Frame = +1 / -1
Query: 394 W*CEIITFMASTYPLPQIDSP*SMFMVAPNPGRRLLSVSFLVGFQLPTKASCADGWLFLI 573
W +I TF++ T PL +DSP S FMVAP PGRRLLSVSFLVGF P KASCADG FL+
Sbjct: 586 WQGQINTFISHTKPLHPMDSPHSRFMVAPKPGRRLLSVSFLVGFHTPVKASCADGCFFLM 407
Query: 574 GVIHRHIAAMNASVAFCSRYSGXXSRSALIPPPA 675
GVIHRH+AA NASVAFCS SG SRS P PA
Sbjct: 406 GVIHRHMAAANASVAFCSSSSGWCSRSTFSPSPA 305
Score = 132 bits (283), Expect = 2e-030
Identities = 59/93 (63%), Positives = 66/93 (70%)
Frame = -1 / +2
Query: 666 RDQGGSAPPPRVPGAERDAGIHGGDVAVDDADQEEPAVGARRLRGQLEAHQERHAQQTPA 487
R +GG A PP GAERDAG+ GG VAVDDA QEE AVGAR L G +EAHQERHAQQ PA
Sbjct: 314 RAEGGPAAPPGAAGAERDAGVRGGHVAVDDAHQEEAAVGARGLHGGVEAHQERHAQQAPA 493
Query: 486 WVRRHHEHTLRRVDLRQGIRRRHERYNLALPVL 388
+ RHHE +RRV QG+ R ER +L LP L
Sbjct: 494 GLGRHHEPAVRRVHRVQGLGVRDERVDLPLPWL 592
>gb|BU994365.1|BU994365 HM06M18r HM Hordeum vulgare subsp. vulgare cDNA clone HM06M18
5-PRIME, mRNA sequence
Length = 597
Score = 166 bits (357), Expect = 1e-040
Identities = 64/75 (85%), Positives = 69/75 (92%)
Frame = -2 / -2
Query: 533 GNWKPTKNDTLSKRLPGFGATMNILYGESICGKGYVDAMNVIISHYQYYLDLMGVGREHS 354
G WKPTKNDTLSKRLPGFGATMN+LYGESICG+G++D MNVIISHYQYYLDLMG GRE S
Sbjct: 593 GVWKPTKNDTLSKRLPGFGATMNLLYGESICGRGFIDEMNVIISHYQYYLDLMGFGRERS 414
Query: 353 GDNRDCAEQAPFNPS 309
G N DCAEQAPFNP+
Sbjct: 413 GLNLDCAEQAPFNPA 369
Score = 134 bits (288), Expect = 4e-031
Identities = 61/87 (70%), Positives = 66/87 (75%)
Frame = +1 / +1
Query: 274 PDCCCFWSSVGLEGLNGACSAQSRLSPECSRPTPMRSR*YW*CEIITFMASTYPLPQIDS 453
P C SS GL GACSAQSRL PE SRP PMRSR*YW* E++TF++S PLPQ+DS
Sbjct: 334 PPVGCCSSSFLGAGLKGACSAQSRLRPERSRPKPMRSR*YW*WEMMTFISSMKPLPQMDS 513
Query: 454 P*SMFMVAPNPGRRLLSVSFLVGFQLP 534
P* FMVAP PGRRLLSVSFLVGF P
Sbjct: 514 P*RRFMVAPKPGRRLLSVSFLVGFHTP 594
Score = 120 bits (257), Expect = 7e-027
Identities = 54/84 (64%), Positives = 61/84 (72%)
Frame = -1 / -1
Query: 534 GQLEAHQERHAQQTPAWVRRHHEHTLRRVDLRQGIRRRHERYNLALPVLP*PHGRRP*AL 355
G +EAHQERHAQQ P +RRHHE LRRV LRQG+ RR ER++L LPVLP PHG RP AL
Sbjct: 594 GGVEAHQERHAQQAPPGLRRHHEPPLRRVHLRQGLHRRDERHHLPLPVLPRPHGLRPRAL 415
Query: 354 WRQP*LRRAGTVQPLQPDG*PEAA 283
QP LRRAG +QP +G AA
Sbjct: 414 RPQPRLRRAGPLQPRPQEGRRAAA 343
Score = 107 bits (229), Expect = 5e-023
Identities = 51/78 (65%), Positives = 59/78 (75%)
Frame = +3 / +3
Query: 294 VIRRAGGVERCLLGAITVVARVLTADAHEVKVILVVRDYNVHGVDVSLAADRLAVEYVHG 473
V+ GGVE LLGA+ V A L A+AHEV+V+LVV D +VH VD + AAD LAVE VHG
Sbjct: 354 VVLLGGGVEGGLLGAVEVEAGALAAEAHEVEVVLVVGDDDVHLVDEAPAADGLAVEEVHG 533
Query: 474 GAEPRQAFAERVVLGGLP 527
GAE R+A AERVVLGGLP
Sbjct: 534 GAEAREALAERVVLGGLP 587
>gb|BI958231.1|BI958231 HVSMEn0013P22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013P22f, mRNA sequence
Length = 914
Score = 131 bits (281), Expect = 3e-030
Identities = 53/79 (67%), Positives = 59/79 (74%)
Frame = -2 / +2
Query: 674 AGGGIKADLLXXPEYLEQNATLAFMAAMWRWMTPIKKSQPSAHDAFVGNWKPTKNDTLSK 495
AG G+K DLL PE LE NATLAF AAMWRWMTPIKK QPSAH+AF G W+PT+ND LSK
Sbjct: 308 AGDGLKVDLLHHPELLEXNATLAFAAAMWRWMTPIKKKQPSAHEAFTGVWEPTRNDALSK 487
Query: 494 RLPGFGATMNILYGESICG 438
RL G GA M + G + G
Sbjct: 488 RLRGLGAPMKLCTGGRVGG 544
Score = 106 bits (227), Expect = 1e-022
Identities = 49/79 (62%), Positives = 51/79 (64%)
Frame = +1 / -3
Query: 439 PQIDSP*SMFMVAPNPGRRLLSVSFLVGFQLPTKASCADGWLFLIGVIHRHIAAMNASVA 618
P P FM AP P RLLS SFLVG P KASCADG FL+GVIHRH+AA NASVA
Sbjct: 543 PPTRPPVQSFMGAPKPRSRLLSASFLVGSHTPVKASCADGCFFLMGVIHRHMAAANASVA 364
Query: 619 FCSRYSGXXSRSALIPPPA 675
CS SG SRS P PA
Sbjct: 363 XCSSSSGWCSRSTFSPSPA 307
>gb|BI960422.1|BI960422 HVSMEn0024I18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024I18f, mRNA sequence
Length = 683
Score = 128 bits (275), Expect = 2e-029
Identities = 54/81 (66%), Positives = 59/81 (72%)
Frame = -2 / +2
Query: 674 AGGGIKADLLXXPEYLEQNATLAFMAAMWRWMTPIKKSQPSAHDAFVGNWKPTKNDTLSK 495
AG + DLL PE LEQNATLAF AAMWR MTPIKK QP+ H+AF G +PTKNDTLSK
Sbjct: 329 AGDXLXVDLLHHPELLEQNATLAFAAAMWRGMTPIKKKQPAGHEAFTGVGEPTKNDTLSK 508
Query: 494 RLPGFGATMNILYGESICGKG 432
RLPG A M + YGE I G G
Sbjct: 509 RLPGLXAAMKLAYGEGIWGGG 571
Score = 110 bits (235), Expect = 8e-024
Identities = 52/91 (57%), Positives = 59/91 (64%)
Frame = +1 / -3
Query: 403 EIITFMASTYPLPQIDSP*SMFMVAPNPGRRLLSVSFLVGFQLPTKASCADGWLFLIGVI 582
++I F P PQ+ SP*+ FM A +PGRRLLSVSFLVG P ASC G FL+GVI
Sbjct: 600 QLIRFSRRCSPPPQMPSP*ASFMAAXSPGRRLLSVSFLVGSPTPVNASCPAGCFFLMGVI 421
Query: 583 HRHIAAMNASVAFCSRYSGXXSRSALIPPPA 675
RH+AA NASVAFCS SG RS PA
Sbjct: 420 PRHMAAANASVAFCSSSSGWCXRSTXSXSPA 328
>gb|CB874607.1|CB874607 HX05M10w HX Hordeum vulgare subsp. vulgare cDNA clone HX05M10
3-PRIME, mRNA sequence
Length = 517
Score = 126 bits (270), Expect = 1e-028
Identities = 47/61 (77%), Positives = 54/61 (88%)
Frame = -2 / -1
Query: 488 PGFGATMNILYGESICGKGYVDAMNVIISHYQYYLDLMGVGREHSGDNRDCAEQAPFNPS 309
PGFG TMNILYG++ICGKG ++MN IISHYQ+YLDLMGVG +HSGDN DCA+Q PFNPS
Sbjct: 517 PGFGVTMNILYGDAICGKGTTESMNAIISHYQHYLDLMGVGVQHSGDNLDCADQVPFNPS 338
Query: 308 S 306
S
Sbjct: 337 S 335
>gb|BQ660428.1|BQ660428 HI02H22u HI Hordeum vulgare subsp. vulgare cDNA clone HI02H22
3-PRIME, mRNA sequence
Length = 488
Score = 102 bits (218), Expect = 2e-021
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = -2 / -3
Query: 452 ESICGKGYVDAMNVIISHYQYYLDLMGVGREHSGDNRDCAEQAPFNPS 309
ESICG+G++D MNVIISHYQYYLDLMG GRE SG N DCAEQAPFNP+
Sbjct: 486 ESICGRGFIDEMNVIISHYQYYLDLMGFGRERSGLNLDCAEQAPFNPA 343
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 318,833,662
Number of Sequences: 312970
Number of extensions: 5032868
Number of successful extensions: 84769
Number of sequences better than 1.0e-020: 21
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7422924075
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)